Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000215.1

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Forward (+)

80411 .. 80671

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000215.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgtctgtgtctcatctctctctctgcatgctctcctttatcttcaaggaccacgtcgccgccgccatgacttccacggctccaccctcgccgctcaagaccgcgttgcagtgccgtcaaaagatgaagaagcaccgcaagcggtaccgtgctgagaagcagcgggcttctaggtacccgggtcagtcttcctcgttgtgggctttgtttcatctcatggatgaaatggagtccgacccggatcggggattggatatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

86

Amino Acids

9.85

Weight (kDa)

9.75

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	144, 174
AccB1I	GGYRCC	2 cut(s)	144, 174
AccBSI	CCGCTC	1 cut(s)	94
AccII	CGCG	1 cut(s)	104
AciI	CCGC	7 cut(s)	60, 63, 92, 102, 136, 142, 163
AclWI	GGATC	1 cut(s)	249
AfaI	GTAC	2 cut(s)	146, 176
AfiI	CCNNNNNNNGG	3 cut(s)	198, 244, 245
AgsI	TTSAA	1 cut(s)	46
AjiI	CACGTC	1 cut(s)	55
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	249
Ama87I	CYCGRG	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	160
Asp718I	GGTACC	2 cut(s)	144, 174
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	3 cut(s)	179, 180, 239
AvaI	CYCGRG	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	49
BaeI	ACNNNNGTAYC	2 cut(s)	166, 199
BanI	GGYRCC	2 cut(s)	144, 174
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	172
BceAI	ACGGC	2 cut(s)	93, 99
BcnI	CCSGG	3 cut(s)	179, 180, 239
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	1 cut(s)	171
BisI	GCNGC	4 cut(s)	60, 63, 92, 161
BlsI	GCNGC	4 cut(s)	61, 64, 93, 162
Bme1390I	CCNGG	3 cut(s)	179, 180, 239
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	178
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	3 cut(s)	81, 146, 176
BmrFI	CCNGG	3 cut(s)	179, 180, 239
BpiI	GAAGAC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	80
BpuMI	CCSGG	3 cut(s)	179, 180, 239
BsaJI	CCNNGG	2 cut(s)	75, 178
Bsc4I	CCNNNNNNNGG	3 cut(s)	198, 244, 245
BseDI	CCNNGG	2 cut(s)	75, 178
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	3 cut(s)	198, 244, 245
BseMII	CTCAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	104
BshNI	GGYRCC	2 cut(s)	144, 174
BsiHKCI	CYCGRG	1 cut(s)	178
BsiSI	CCGG	2 cut(s)	179, 239
BslI	CCNNNNNNNGG	3 cut(s)	198, 244, 245
BsmAI	GTCTC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	7 cut(s)	60, 63, 92, 102, 136, 142, 163
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	3 cut(s)	81, 146, 176
BspPI	GGATC	1 cut(s)	249
BspT107I	GGYRCC	2 cut(s)	144, 174
BsrBI	CCGCTC	1 cut(s)	94
BssECI	CCNNGG	2 cut(s)	75, 178
BssMI	GATC	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	29, 140, 165
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	1 cut(s)	104
BstKTI	GATC	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	3 cut(s)	177, 178, 237
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	1 cut(s)	172
BstV2I	GAAGAC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	3 cut(s)	29, 140, 165
Cfr13I	GGNCC	1 cut(s)	49
Cfr9I	CCCGGG	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	145, 175
CviAII	CATG	3 cut(s)	28, 67, 217
CviJI	RGCY	3 cut(s)	80, 167, 203
CviKI_1	RGCY	3 cut(s)	80, 167, 203
CviQI	GTAC	2 cut(s)	145, 175
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	178
FaeI	CATG	3 cut(s)	31, 70, 220
FaiI	YATR	5 cut(s)	29, 68, 218, 257, 259
FatI	CATG	3 cut(s)	27, 66, 216
FauI	CCCGC	1 cut(s)	156
Fnu4HI	GCNGC	4 cut(s)	60, 63, 92, 161
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	4 cut(s)	60, 63, 92, 161
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	4 cut(s)	60, 63, 92, 161
HapII	CCGG	2 cut(s)	179, 239
Hin1II	CATG	3 cut(s)	31, 70, 220
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	2 cut(s)	179, 239
Hpy188I	TCNGA	1 cut(s)	235
Hpy188III	TCNNGA	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	27, 109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	31, 70, 220
KpnI	GGTACC	2 cut(s)	148, 178
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	2 cut(s)	192, 252
Lsp1109I	GCAGC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	171
MaeII	ACGT	1 cut(s)	54
MalI	GATC	1 cut(s)	243
MbiI	CCGCTC	1 cut(s)	94
MboI	GATC	1 cut(s)	241
MboII	GAAGA	3 cut(s)	34, 139, 180
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	2 cut(s)	97, 202
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	2 cut(s)	179, 239
MspR9I	CCNGG	3 cut(s)	179, 180, 239
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	139
NciI	CCSGG	3 cut(s)	179, 180, 239
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	3 cut(s)	31, 70, 220
NlaIV	GGNNCC	3 cut(s)	81, 146, 176
NspI	RCATGY	1 cut(s)	31
PaeI	GCATGC	1 cut(s)	31
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	4 cut(s)	61, 64, 93, 162
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PspN4I	GGNNCC	3 cut(s)	81, 146, 176
PspPI	GGNCC	1 cut(s)	49
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	146, 176
RsaNI	GTAC	2 cut(s)	145, 175
SatI	GCNGC	4 cut(s)	60, 63, 92, 161
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	1 cut(s)	49
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	3 cut(s)	179, 180, 239
SetI	ASST	2 cut(s)	57, 176
SinI	GGWCC	1 cut(s)	49
SmaI	CCCGGG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	31
SsiI	CCGC	7 cut(s)	60, 63, 92, 102, 136, 142, 163
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	177, 178, 237
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	57
TauI	GCSGC	3 cut(s)	62, 65, 94
TscAI	CASTG	1 cut(s)	116
TseI	GCWGC	1 cut(s)	160
TspDTI	ATGAA	3 cut(s)	140, 200, 237
TspMI	CCCGGG	1 cut(s)	178
TspRI	CASTG	1 cut(s)	116
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	49
XceI	RCATGY	1 cut(s)	31
XmaI	CCCGGG	1 cut(s)	178
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.