Rmu_sc0000233.1_g000008
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000233.1
OG0001209
Physical Location & Seq
Forward (+)
25785 .. 26663
879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000233.1_g000008.1.cds

Sequence Viewer

Length: 879 bp
atgtccaccgtcgtcaccaccgccctccccaccaaaccccgccgggtcccacccccctgctggacccaggacgaggcccgctccctcatcctcgcctaccgcgaccgctggttcgctctccgccgcaccaatctcaaatccgccgactgggaccacgtcgccgccgccaccgccgccgaggctccctcctccccgcccaagaccgcgctgcagtgccgtcataagatggagaagctccgcaagcggttccgcgctgagaagcagcgggcttctgggtacccgggtcggttttcctcgtcgtgggctttgtttcatctcatggatgaaatggagtccggcccggatccgggattggatagtggtggtgagtttggaggtgggttttcgttaaaggctcgtaatttggtgaaatttaatggaaatgttggtagggattttagtcctgatgttgatgagaattctagcttttattctgaagctgaagattatgttaatcaagggtttaggccaaagagtaatggcaagactgatgtgaatcttaagcacagtttcaggcaacatggggactatggagttgatattagaagtgatagggattttgtacctgccggttttcagccaaagagtagtggcattgttgatgggaatgcaaagcgcaatgtgcgttttaaggagtttgatgggtattcttgtttatcaggatcaaagtttgttgagaagagtagtgttgttgggattaagagagatatggatcctgttgaagacttggcttcatcgattatgcggttgggagaaggttttgtgaggatggagaaaatgaagatggaaatgacaatggagattgagaagatgcgaatggagatggagctgaagcgtaat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

293

Amino Acids

33.1

Weight (kDa)

9.23

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 613
Acc65I GGTACC 1 cut(s) 276
AccB1I GGYRCC 1 cut(s) 276
AccBSI CCGCTC 1 cut(s) 81
AccII CGCG 3 cut(s) 102, 206, 252
AclWI GGATC 5 cut(s) 338, 351, 709, 746, 759
AcsI RAATTY 2 cut(s) 410, 457
AcuI CTGAAG 2 cut(s) 495, 501
AfaI GTAC 2 cut(s) 278, 603
AfiI CCNNNNNNNGG 6 cut(s) 60, 73, 147, 300, 346, 347
AflII CTTAAG 1 cut(s) 539
AgsI TTSAA 1 cut(s) 761
AjiI CACGTC 1 cut(s) 157
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 4 cut(s) 235, 465, 479, 868
AluI AGCT 4 cut(s) 235, 465, 479, 868
AlwI GGATC 5 cut(s) 338, 351, 709, 746, 759
Ama87I CYCGRG 1 cut(s) 280
AoxI GGCC 3 cut(s) 75, 337, 506
ApeKI GCWGC 2 cut(s) 208, 262
ApoI RAATTY 2 cut(s) 410, 457
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
Asp718I GGTACC 1 cut(s) 276
AspLEI GCGC 3 cut(s) 208, 254, 657
AspS9I GGNCC 5 cut(s) 46, 63, 76, 151, 338
AsuC2I CCSGG 5 cut(s) 44, 281, 282, 341, 348
AsuHPI GGTGA 3 cut(s) 7, 377, 418
AvaI CYCGRG 1 cut(s) 280
AvaII GGWCC 3 cut(s) 46, 63, 151
BaeI ACNNNNGTAYC 2 cut(s) 268, 301
BamHI GGATCC 2 cut(s) 343, 751
BanI GGYRCC 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 768
BbvI GCAGC 2 cut(s) 195, 274
BccI CCATC 6 cut(s) 220, 635, 674, 802, 817, 856
BceAI ACGGC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 68
BcnI CCSGG 5 cut(s) 44, 281, 282, 341, 348
BfaI CTAG 1 cut(s) 462
BfmI CTRYAG 1 cut(s) 209
BfrI CTTAAG 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 613
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 6 cut(s) 124, 162, 165, 174, 209, 263
BlsI GCNGC 6 cut(s) 125, 163, 166, 175, 210, 264
Bme1390I CCNGG 6 cut(s) 44, 68, 281, 282, 341, 348
Bme18I GGWCC 3 cut(s) 46, 63, 151
BmeT110I CYCGRG 1 cut(s) 280
BmgBI CACGTC 1 cut(s) 157
BmgT120I GGNCC 5 cut(s) 46, 63, 76, 151, 338
BmiI GGNNCC 9 cut(s) 47, 48, 65, 152, 183, 248, 278, 345, 753
BmrFI CCNGG 6 cut(s) 44, 68, 281, 282, 341, 348
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 1 cut(s) 840
BmuI ACTGGG 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 768
BplI GAGNNNNNCTC 4 cut(s) 65, 97, 170, 202
BpuMI CCSGG 5 cut(s) 44, 281, 282, 341, 348
Bsa29I ATCGAT 1 cut(s) 776
BsaBI GATNNNNATC 2 cut(s) 534, 750
BsaJI CCNNGG 3 cut(s) 66, 177, 280
Bsc4I CCNNNNNNNGG 6 cut(s) 60, 73, 147, 300, 346, 347
Bse118I RCCGGY 1 cut(s) 608
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 664
Bse8I GATNNNNATC 2 cut(s) 534, 750
BseBI CCWGG 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 776
BseDI CCNNGG 3 cut(s) 66, 177, 280
BseGI GGATG 3 cut(s) 87, 328, 813
BseJI GATNNNNATC 2 cut(s) 534, 750
BseLI CCNNNNNNNGG 6 cut(s) 60, 73, 147, 300, 346, 347
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 178
BseXI GCAGC 2 cut(s) 195, 274
Bsh1236I CGCG 3 cut(s) 102, 206, 252
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 3 cut(s) 77, 339, 508
BshNI GGYRCC 1 cut(s) 276
BshVI ATCGAT 1 cut(s) 776
BsiEI CGRYCG 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 280
BsiSI CCGG 6 cut(s) 43, 281, 336, 341, 347, 609
BslFI GGGAC 3 cut(s) 32, 164, 578
BslI CCNNNNNNNGG 6 cut(s) 60, 73, 147, 300, 346, 347
BsmFI GGGAC 3 cut(s) 32, 164, 578
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 3 cut(s) 77, 339, 508
BsoBI CYCGRG 1 cut(s) 280
Bsp143I GATC 3 cut(s) 343, 701, 751
BspANI GGCC 3 cut(s) 77, 339, 508
BspCNI CTCAG 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 776
BspFNI CGCG 3 cut(s) 102, 206, 252
BspLI GGNNCC 9 cut(s) 47, 48, 65, 152, 183, 248, 278, 345, 753
BspMAI CTGCAG 1 cut(s) 213
BspMI ACCTGC 1 cut(s) 613
BspPI GGATC 5 cut(s) 338, 351, 709, 746, 759
BspT107I GGYRCC 1 cut(s) 276
BspTI CTTAAG 1 cut(s) 539
BsrBI CCGCTC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 664
BsrFI RCCGGY 1 cut(s) 608
BsrI ACTGG 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 608
BssECI CCNNGG 3 cut(s) 66, 177, 280
BssMI GATC 3 cut(s) 343, 701, 751
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 2 cut(s) 10, 548
Bst6I CTCTTC 1 cut(s) 713
BstAFI CTTAAG 1 cut(s) 539
BstC8I GCNNGC 3 cut(s) 79, 242, 267
BstDEI CTNAG 1 cut(s) 255
BstF5I GGATG 3 cut(s) 87, 328, 813
BstFNI CGCG 3 cut(s) 102, 206, 252
BstHHI GCGC 3 cut(s) 208, 254, 657
BstKTI GATC 3 cut(s) 346, 704, 754
BstMBI GATC 3 cut(s) 343, 701, 751
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 5 cut(s) 170, 173, 179, 241, 661
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 6 cut(s) 42, 66, 279, 280, 339, 346
BstSFI CTRYAG 1 cut(s) 209
BstUI CGCG 3 cut(s) 102, 206, 252
BstV1I GCAGC 2 cut(s) 195, 274
BstV2I GAAGAC 1 cut(s) 768
BstX2I RGATCY 2 cut(s) 343, 751
BstYI RGATCY 2 cut(s) 343, 751
Bsu15I ATCGAT 1 cut(s) 776
BsuRI GGCC 3 cut(s) 77, 339, 508
BsuTUI ATCGAT 1 cut(s) 776
BtrI CACGTC 1 cut(s) 157
BtsCI GGATG 3 cut(s) 87, 328, 813
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 218
BveI ACCTGC 1 cut(s) 613
Cac8I GCNNGC 3 cut(s) 79, 242, 267
CfoI GCGC 3 cut(s) 208, 254, 657
Cfr10I RCCGGY 1 cut(s) 608
Cfr13I GGNCC 5 cut(s) 46, 63, 76, 151, 338
Cfr9I CCCGGG 1 cut(s) 280
ClaI ATCGAT 1 cut(s) 776
Csp6I GTAC 2 cut(s) 277, 602
CviAII CATG 2 cut(s) 319, 560
CviQI GTAC 2 cut(s) 277, 602
DdeI CTNAG 1 cut(s) 255
DpnI GATC 3 cut(s) 345, 703, 753
DpnII GATC 3 cut(s) 343, 701, 751
Eam1104I CTCTTC 1 cut(s) 713
EarI CTCTTC 1 cut(s) 713
EciI GGCGGA 2 cut(s) 110, 130
Eco47I GGWCC 3 cut(s) 46, 63, 151
Eco57I CTGAAG 2 cut(s) 495, 501
Eco88I CYCGRG 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 66
FaeI CATG 2 cut(s) 322, 563
FaiI YATR 7 cut(s) 222, 320, 489, 561, 570, 749, 782
FaqI GGGAC 3 cut(s) 32, 164, 578
FatI CATG 2 cut(s) 318, 559
FauI CCCGC 4 cut(s) 47, 86, 201, 258
Fnu4HI GCNGC 6 cut(s) 124, 162, 165, 174, 209, 263
FokI GGATG 3 cut(s) 74, 335, 820
Fsp4HI GCNGC 6 cut(s) 124, 162, 165, 174, 209, 263
FspBI CTAG 1 cut(s) 462
GlaI GCGC 3 cut(s) 207, 253, 656
GluI GCNGC 6 cut(s) 124, 162, 165, 174, 209, 263
HaeIII GGCC 3 cut(s) 77, 339, 508
HapII CCGG 6 cut(s) 43, 281, 336, 341, 347, 609
HhaI GCGC 3 cut(s) 208, 254, 657
Hin1II CATG 2 cut(s) 322, 563
Hin6I GCGC 3 cut(s) 206, 252, 655
HinP1I GCGC 3 cut(s) 206, 252, 655
HinfI GANTC 2 cut(s) 332, 535
HpaII CCGG 6 cut(s) 43, 281, 336, 341, 347, 609
HphI GGTGA 3 cut(s) 7, 377, 418
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 1 cut(s) 475
Hpy188III TCNNGA 2 cut(s) 443, 699
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 3 cut(s) 14, 161, 301
HpyAV CCTTC 1 cut(s) 788
HpyCH4III ACNGT 2 cut(s) 10, 548
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 211, 650
HpyF10VI GCNNNNNNNGC 5 cut(s) 170, 173, 179, 241, 661
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 2 cut(s) 322, 563
HspAI GCGC 3 cut(s) 206, 252, 655
KflI GGGWCCC 1 cut(s) 46
KpnI GGTACC 1 cut(s) 280
Kzo9I GATC 3 cut(s) 343, 701, 751
LmnI GCTCC 4 cut(s) 86, 187, 240, 865
Lsp1109I GCAGC 2 cut(s) 195, 274
LweI GCATC 1 cut(s) 840
MaeI CTAG 1 cut(s) 462
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 13
MalI GATC 3 cut(s) 345, 703, 753
MbiI CCGCTC 1 cut(s) 81
MboI GATC 3 cut(s) 343, 701, 751
MboII GAAGA 5 cut(s) 494, 730, 773, 832, 859
MflI RGATCY 2 cut(s) 343, 751
MluCI AATT 3 cut(s) 400, 410, 457
MlyI GAGTC 1 cut(s) 341
MseI TTAA 6 cut(s) 389, 414, 492, 540, 669, 738
MspA1I CMGCKG 2 cut(s) 108, 265
MspCI CTTAAG 1 cut(s) 539
MspI CCGG 6 cut(s) 43, 281, 336, 341, 347, 609
MspR9I CCNGG 6 cut(s) 44, 68, 281, 282, 341, 348
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 3 cut(s) 102, 206, 252
MwoI GCNNNNNNNGC 5 cut(s) 170, 173, 179, 241, 661
NciI CCSGG 5 cut(s) 44, 281, 282, 341, 348
NdeII GATC 3 cut(s) 343, 701, 751
NlaIII CATG 2 cut(s) 322, 563
NlaIV GGNNCC 9 cut(s) 47, 48, 65, 152, 183, 248, 278, 345, 753
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 1 cut(s) 652
PfeI GAWTC 1 cut(s) 535
PflFI GACNNNGTC 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 346
PkrI GCNGC 6 cut(s) 125, 163, 166, 175, 210, 264
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PpuMI RGGWCCY 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 9 cut(s) 47, 48, 65, 152, 183, 248, 278, 345, 753
PspPI GGNCC 5 cut(s) 46, 63, 76, 151, 338
PspPPI RGGWCCY 1 cut(s) 46
PstI CTGCAG 1 cut(s) 213
PsuI RGATCY 2 cut(s) 343, 751
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 2 cut(s) 278, 603
RsaNI GTAC 2 cut(s) 277, 602
SaqAI TTAA 6 cut(s) 389, 414, 492, 540, 669, 738
SatI GCNGC 6 cut(s) 124, 162, 165, 174, 209, 263
Sau3AI GATC 3 cut(s) 343, 701, 751
Sau96I GGNCC 5 cut(s) 46, 63, 76, 151, 338
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 6 cut(s) 44, 68, 281, 282, 341, 348
SetI ASST 8 cut(s) 159, 237, 379, 467, 481, 607, 799, 870
SfaNI GCATC 1 cut(s) 840
SfcI CTRYAG 1 cut(s) 209
SinI GGWCC 3 cut(s) 46, 63, 151
SmaI CCCGGG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 3 cut(s) 400, 410, 457
SspMI CTAG 1 cut(s) 462
StyD4I CCNGG 6 cut(s) 42, 66, 279, 280, 339, 346
TaaI ACNGT 2 cut(s) 10, 548
TaiI ACGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 776
TasI AATT 3 cut(s) 400, 410, 457
TauI GCSGC 4 cut(s) 126, 164, 167, 176
TfiI GAWTC 1 cut(s) 535
Tru1I TTAA 6 cut(s) 389, 414, 492, 540, 669, 738
Tru9I TTAA 6 cut(s) 389, 414, 492, 540, 669, 738
TscAI CASTG 1 cut(s) 218
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 2 cut(s) 208, 262
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 4 cut(s) 302, 339, 762, 833
TspMI CCCGGG 1 cut(s) 280
TspRI CASTG 1 cut(s) 218
Tth111I GACNNNGTC 1 cut(s) 155
Vha464I CTTAAG 1 cut(s) 539
VpaK11BI GGWCC 3 cut(s) 46, 63, 151
XapI RAATTY 2 cut(s) 410, 457
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XmaI CCCGGG 1 cut(s) 280
XspI CTAG 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.