Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8189974.1

Orthogroup ID

OG0001209

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 697

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8189974.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 664 bp

ccgccctccccaccaaaccccgccgggtcccacccccctgctggacccaggacgaggcccgctccctcatcctcgcctaccgcgaccgctggttcgctctccgccgcaccaatctcaaatccgccgactgggaccacgtcgccgccgccaccgccgccgaggctccctcctccccgcccaagaccgcgctgcagtgccgtcataagatggagaagctccgcaagcggttccgcgctgagaagcagcgggcttctgggtacccgggtcggttttcctcgtcgtgggctttgtttcatctcatggatgaaatggagtccggcccggatccgggattggatagtggtggtgagtttggaggtgggttttcgttaaaggctcgtaatttggtgaaatttaatggaaatgttggtagggattttagtcctgatgttgatgagaattctagcttttattctgaagctgaagattatgttaatcaagggtttaggccaaagagtaatggcaagactgatgtgaatcttaagcacagtttcaggcaacatggggactatggagttgatattagaagtgatagggattttgtacctgccggttttcagccaaagagtagtggcattgttgatgggaatgcaaagcgcaatgtgcgttttaaggagtttgatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

221

Amino Acids

24.82

Weight (kDa)

9.46

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001209)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20390 FvH4_5g20450
malus_domestica	MD04G1055300.v1.1 MD06G1046900.v1.1
prunus_persica	Prupe.5G055100_v2.0.a1
pyrus_communis	pycom04g04820 pycom06g03940
rosa_chinensis	RchiOBHm_Chr3g0463421 RchiOBHm_Chr3g0465461 RchiOBHm_Chr6g0286391 RchiOBHm_Chr7g0205651 RchiOBHm_Chr7g0205761
rosa_laevigata	RLG00000003356 RLG00000003367 RLG00000014149 RLG00000036554
rosa_multiflora	Rmu_co8189974.1_g000001 Rmu_co8301667.1_g000001 Rmu_sc0000076.1_g000052 Rmu_sc0000215.1_g000019 Rmu_sc0000233.1_g000008 Rmu_sc0000524.1_g000010 Rmu_sc0001711.1_g000030 Rmu_sc0001836.1_g000048 Rmu_sc0006124.1_g000002 Rmu_sc0008518.1_g000014 Rmu_ssc0000339.1_g000018
rosa_roxburghii	Rroxscaffold_1G00022950 Rroxscaffold_1G00023180 Rroxscaffold_3G00252000 Rroxscaffold_3G00252100 Rroxscaffold_5G00376460 Rroxscaffold_7G00200010 Rroxscaffold_7G00208540
rosa_rugosa	Rorug01G0167500 Rorug03G0130100 Rorug03G0271600 Rorug04G0106200 Rorug07G0092400
rosa_samantha	Rh1BG150300 Rh1DG182200 Rh2AG068600 Rh2BG067800 Rh2BG264700 Rh2BG278600 Rh2CG069100 Rh4CG322900 Rh5BG390400 Rh7AG223300 Rh7BG218400 Rh7CG236600 Rh7DG230300 Rh7DG231100
rosa_wichuraiana	Rw4G029570 Rw7G019260 Rw7G019350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	594
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AccBSI	CCGCTC	1 cut(s)	62
AccII	CGCG	3 cut(s)	83, 187, 233
AclWI	GGATC	2 cut(s)	319, 332
AcsI	RAATTY	2 cut(s)	391, 438
AcuI	CTGAAG	2 cut(s)	476, 482
AfaI	GTAC	2 cut(s)	259, 584
AfiI	CCNNNNNNNGG	6 cut(s)	41, 54, 128, 281, 327, 328
AflII	CTTAAG	1 cut(s)	520
AjiI	CACGTC	1 cut(s)	138
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	3 cut(s)	216, 446, 460
AluI	AGCT	3 cut(s)	216, 446, 460
AlwI	GGATC	2 cut(s)	319, 332
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	3 cut(s)	56, 318, 487
ApeKI	GCWGC	2 cut(s)	189, 243
ApoI	RAATTY	2 cut(s)	391, 438
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
Asp718I	GGTACC	1 cut(s)	257
AspLEI	GCGC	3 cut(s)	189, 235, 638
AspS9I	GGNCC	5 cut(s)	27, 44, 57, 132, 319
AsuC2I	CCSGG	5 cut(s)	25, 262, 263, 322, 329
AsuHPI	GGTGA	2 cut(s)	358, 399
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	3 cut(s)	27, 44, 132
BaeI	ACNNNNGTAYC	2 cut(s)	249, 282
BamHI	GGATCC	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	176, 255
BccI	CCATC	3 cut(s)	201, 616, 655
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	49
BcnI	CCSGG	5 cut(s)	25, 262, 263, 322, 329
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	190
BfrI	CTTAAG	1 cut(s)	520
BfuAI	ACCTGC	1 cut(s)	594
BglI	GCCNNNNNGGC	1 cut(s)	160
BisI	GCNGC	6 cut(s)	105, 143, 146, 155, 190, 244
BlsI	GCNGC	6 cut(s)	106, 144, 147, 156, 191, 245
Bme1390I	CCNGG	6 cut(s)	25, 49, 262, 263, 322, 329
Bme18I	GGWCC	3 cut(s)	27, 44, 132
BmeT110I	CYCGRG	1 cut(s)	261
BmgBI	CACGTC	1 cut(s)	138
BmgT120I	GGNCC	5 cut(s)	27, 44, 57, 132, 319
BmiI	GGNNCC	8 cut(s)	28, 29, 46, 133, 164, 229, 259, 326
BmrFI	CCNGG	6 cut(s)	25, 49, 262, 263, 322, 329
BmrI	ACTGGG	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	138
BplI	GAGNNNNNCTC	4 cut(s)	46, 78, 151, 183
BpuMI	CCSGG	5 cut(s)	25, 262, 263, 322, 329
BsaBI	GATNNNNATC	1 cut(s)	515
BsaJI	CCNNGG	3 cut(s)	47, 158, 261
Bsc4I	CCNNNNNNNGG	6 cut(s)	41, 54, 128, 281, 327, 328
Bse118I	RCCGGY	1 cut(s)	589
Bse1I	ACTGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	645
Bse8I	GATNNNNATC	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	3 cut(s)	47, 158, 261
BseGI	GGATG	2 cut(s)	68, 309
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	6 cut(s)	41, 54, 128, 281, 327, 328
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	159
BseXI	GCAGC	2 cut(s)	176, 255
Bsh1236I	CGCG	3 cut(s)	83, 187, 233
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	3 cut(s)	58, 320, 489
BshNI	GGYRCC	1 cut(s)	257
BsiEI	CGRYCG	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	6 cut(s)	24, 262, 317, 322, 328, 590
BslFI	GGGAC	3 cut(s)	13, 145, 559
BslI	CCNNNNNNNGG	6 cut(s)	41, 54, 128, 281, 327, 328
BsmFI	GGGAC	3 cut(s)	13, 145, 559
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	3 cut(s)	58, 320, 489
BsoBI	CYCGRG	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	324
BspANI	GGCC	3 cut(s)	58, 320, 489
BspCNI	CTCAG	1 cut(s)	228
BspFNI	CGCG	3 cut(s)	83, 187, 233
BspLI	GGNNCC	8 cut(s)	28, 29, 46, 133, 164, 229, 259, 326
BspMAI	CTGCAG	1 cut(s)	194
BspMI	ACCTGC	1 cut(s)	594
BspPI	GGATC	2 cut(s)	319, 332
BspT107I	GGYRCC	1 cut(s)	257
BspTI	CTTAAG	1 cut(s)	520
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	645
BsrFI	RCCGGY	1 cut(s)	589
BsrI	ACTGG	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	589
BssECI	CCNNGG	3 cut(s)	47, 158, 261
BssMI	GATC	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	529
BstAFI	CTTAAG	1 cut(s)	520
BstC8I	GCNNGC	3 cut(s)	60, 223, 248
BstDEI	CTNAG	1 cut(s)	236
BstF5I	GGATG	2 cut(s)	68, 309
BstFNI	CGCG	3 cut(s)	83, 187, 233
BstHHI	GCGC	3 cut(s)	189, 235, 638
BstKTI	GATC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	324
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	5 cut(s)	151, 154, 160, 222, 642
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	6 cut(s)	23, 47, 260, 261, 320, 327
BstSFI	CTRYAG	1 cut(s)	190
BstUI	CGCG	3 cut(s)	83, 187, 233
BstV1I	GCAGC	2 cut(s)	176, 255
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BsuRI	GGCC	3 cut(s)	58, 320, 489
BtrI	CACGTC	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	68, 309
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	1 cut(s)	199
BveI	ACCTGC	1 cut(s)	594
Cac8I	GCNNGC	3 cut(s)	60, 223, 248
CfoI	GCGC	3 cut(s)	189, 235, 638
Cfr10I	RCCGGY	1 cut(s)	589
Cfr13I	GGNCC	5 cut(s)	27, 44, 57, 132, 319
Cfr9I	CCCGGG	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	258, 583
CviAII	CATG	2 cut(s)	300, 541
CviQI	GTAC	2 cut(s)	258, 583
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
EciI	GGCGGA	2 cut(s)	91, 111
Eco47I	GGWCC	3 cut(s)	27, 44, 132
Eco57I	CTGAAG	2 cut(s)	476, 482
Eco88I	CYCGRG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	47
FaeI	CATG	2 cut(s)	303, 544
FaiI	YATR	5 cut(s)	203, 301, 470, 542, 551
FaqI	GGGAC	3 cut(s)	13, 145, 559
FatI	CATG	2 cut(s)	299, 540
FauI	CCCGC	4 cut(s)	28, 67, 182, 239
Fnu4HI	GCNGC	6 cut(s)	105, 143, 146, 155, 190, 244
FokI	GGATG	2 cut(s)	55, 316
Fsp4HI	GCNGC	6 cut(s)	105, 143, 146, 155, 190, 244
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	3 cut(s)	188, 234, 637
GluI	GCNGC	6 cut(s)	105, 143, 146, 155, 190, 244
HaeIII	GGCC	3 cut(s)	58, 320, 489
HapII	CCGG	6 cut(s)	24, 262, 317, 322, 328, 590
HhaI	GCGC	3 cut(s)	189, 235, 638
Hin1II	CATG	2 cut(s)	303, 544
Hin6I	GCGC	3 cut(s)	187, 233, 636
HinP1I	GCGC	3 cut(s)	187, 233, 636
HinfI	GANTC	2 cut(s)	313, 516
HpaII	CCGG	6 cut(s)	24, 262, 317, 322, 328, 590
HphI	GGTGA	2 cut(s)	358, 399
Hpy188I	TCNGA	1 cut(s)	456
Hpy188III	TCNNGA	1 cut(s)	424
Hpy99I	CGWCG	2 cut(s)	142, 282
HpyCH4III	ACNGT	1 cut(s)	529
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	2 cut(s)	192, 631
HpyF10VI	GCNNNNNNNGC	5 cut(s)	151, 154, 160, 222, 642
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	303, 544
HspAI	GCGC	3 cut(s)	187, 233, 636
KflI	GGGWCCC	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	324
LmnI	GCTCC	3 cut(s)	67, 168, 221
Lsp1109I	GCAGC	2 cut(s)	176, 255
MaeI	CTAG	1 cut(s)	443
MaeII	ACGT	1 cut(s)	137
MalI	GATC	1 cut(s)	326
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	1 cut(s)	324
MboII	GAAGA	1 cut(s)	475
MflI	RGATCY	1 cut(s)	324
MluCI	AATT	3 cut(s)	381, 391, 438
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	9 cut(s)	16, 48, 76, 82, 153, 177, 180, 285, 349
MseI	TTAA	5 cut(s)	370, 395, 473, 521, 650
MspA1I	CMGCKG	2 cut(s)	89, 246
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	6 cut(s)	24, 262, 317, 322, 328, 590
MspR9I	CCNGG	6 cut(s)	25, 49, 262, 263, 322, 329
Mva1269I	GAATGC	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	49
MvnI	CGCG	3 cut(s)	83, 187, 233
MwoI	GCNNNNNNNGC	5 cut(s)	151, 154, 160, 222, 642
NciI	CCSGG	5 cut(s)	25, 262, 263, 322, 329
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	2 cut(s)	303, 544
NlaIV	GGNNCC	8 cut(s)	28, 29, 46, 133, 164, 229, 259, 326
NmeAIII	GCCGAG	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PctI	GAATGC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	516
PflFI	GACNNNGTC	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	327
PkrI	GCNGC	6 cut(s)	106, 144, 147, 156, 191, 245
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PpuMI	RGGWCCY	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	8 cut(s)	28, 29, 46, 133, 164, 229, 259, 326
PspPI	GGNCC	5 cut(s)	27, 44, 57, 132, 319
PspPPI	RGGWCCY	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	324
PsyI	GACNNNGTC	1 cut(s)	136
RsaI	GTAC	2 cut(s)	259, 584
RsaNI	GTAC	2 cut(s)	258, 583
SaqAI	TTAA	5 cut(s)	370, 395, 473, 521, 650
SatI	GCNGC	6 cut(s)	105, 143, 146, 155, 190, 244
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	5 cut(s)	27, 44, 57, 132, 319
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	6 cut(s)	25, 49, 262, 263, 322, 329
SetI	ASST	6 cut(s)	140, 218, 360, 448, 462, 588
SfcI	CTRYAG	1 cut(s)	190
SinI	GGWCC	3 cut(s)	27, 44, 132
SmaI	CCCGGG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	3 cut(s)	381, 391, 438
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	6 cut(s)	23, 47, 260, 261, 320, 327
TaaI	ACNGT	1 cut(s)	529
TaiI	ACGT	1 cut(s)	140
TasI	AATT	3 cut(s)	381, 391, 438
TauI	GCSGC	4 cut(s)	107, 145, 148, 157
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	5 cut(s)	370, 395, 473, 521, 650
Tru9I	TTAA	5 cut(s)	370, 395, 473, 521, 650
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	2 cut(s)	189, 243
TspDTI	ATGAA	2 cut(s)	283, 320
TspMI	CCCGGG	1 cut(s)	261
TspRI	CASTG	1 cut(s)	199
Tth111I	GACNNNGTC	1 cut(s)	136
Vha464I	CTTAAG	1 cut(s)	520
VpaK11BI	GGWCC	3 cut(s)	27, 44, 132
XapI	RAATTY	2 cut(s)	391, 438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	38
XmaI	CCCGGG	1 cut(s)	261
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.