Rh2BG067800
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001209
Physical Location & Seq
Forward (+)
5144326 .. 5145612
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG067800.1

Sequence Viewer

Length: 261 bp
ATGGAGAAACTCCGCAAGCAGTACCGTGCTGAGAAGCAGCGGGCTTCTAGGTACCCGGGTCGGTCTTCCTCCTCGTCGTGGGCTTTGTTTCATCTCATGGATGAAATGGAGTCCGACCCGGATCGGGGATTGGATAATGGTGGTGAGTTTGGAGGTGGGTTTTCGTTAAAGGCTCTTAATTTGATGAAATTTGATGGAAATGGAGGGTGGAATGGTCCGATTGGCGGCGGGACGACGAGGGAGGCTCAGTTAAGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

86

Amino Acids

9.46

Weight (kDa)

8.09

Isoelectric Point (pI)

32.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 51
AciI CCGC 4 cut(s) 13, 40, 225, 228
AclWI GGATC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 188
AfaI GTAC 2 cut(s) 23, 53
AfiI CCNNNNNNNGG 4 cut(s) 78, 124, 125, 224
AlwI GGATC 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 188
Asp718I GGTACC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 215
AsuC2I CCSGG 3 cut(s) 56, 57, 119
AsuHPI GGTGA 1 cut(s) 155
AvaI CYCGRG 1 cut(s) 55
AvaII GGWCC 1 cut(s) 215
BaeI ACNNNNGTAYC 2 cut(s) 43, 76
BanI GGYRCC 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 49
BccI CCATC 1 cut(s) 188
BcnI CCSGG 3 cut(s) 56, 57, 119
BfaI CTAG 1 cut(s) 48
BisI GCNGC 2 cut(s) 38, 226
BlsI GCNGC 2 cut(s) 39, 227
Bme1390I CCNGG 3 cut(s) 56, 57, 119
Bme18I GGWCC 1 cut(s) 215
BmeT110I CYCGRG 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 3 cut(s) 56, 57, 119
BpiI GAAGAC 1 cut(s) 57
BplI GAGNNNNNCTC 2 cut(s) 229, 261
BpuMI CCSGG 3 cut(s) 56, 57, 119
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 1 cut(s) 233
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 124, 125, 224
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 106
BseLI CCNNNNNNNGG 4 cut(s) 78, 124, 125, 224
BseMII CTCAG 2 cut(s) 21, 260
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 49
BshNI GGYRCC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 2 cut(s) 56, 119
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 4 cut(s) 78, 124, 125, 224
BsmFI GGGAC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 55
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 4 cut(s) 13, 40, 225, 228
BspCNI CTCAG 2 cut(s) 22, 259
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 17, 42
BstDEI CTNAG 2 cut(s) 30, 246
BstF5I GGATG 1 cut(s) 106
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstSCI CCNGG 3 cut(s) 54, 55, 117
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 17, 42
Cfr13I GGNCC 1 cut(s) 215
Cfr9I CCCGGG 1 cut(s) 55
Csp6I GTAC 2 cut(s) 22, 52
CviAII CATG 1 cut(s) 97
CviJI RGCY 4 cut(s) 44, 83, 173, 245
CviKI_1 RGCY 4 cut(s) 44, 83, 173, 245
CviQI GTAC 2 cut(s) 22, 52
DdeI CTNAG 2 cut(s) 30, 246
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 55
FaeI CATG 1 cut(s) 100
FaiI YATR 1 cut(s) 98
FaqI GGGAC 1 cut(s) 244
FatI CATG 1 cut(s) 96
FauI CCCGC 2 cut(s) 33, 221
Fnu4HI GCNGC 2 cut(s) 38, 226
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 2 cut(s) 38, 226
FspBI CTAG 1 cut(s) 48
GluI GCNGC 2 cut(s) 38, 226
HapII CCGG 2 cut(s) 56, 119
Hin1II CATG 1 cut(s) 100
HinfI GANTC 1 cut(s) 110
HpaII CCGG 2 cut(s) 56, 119
HphI GGTGA 1 cut(s) 155
Hpy188I TCNGA 2 cut(s) 115, 219
Hpy99I CGWCG 2 cut(s) 79, 238
HpyCH4III ACNGT 1 cut(s) 26
HpyF3I CTNAG 2 cut(s) 30, 246
Hsp92II CATG 1 cut(s) 100
KpnI GGTACC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 2 cut(s) 69, 132
Lsp1109I GCAGC 1 cut(s) 49
MaeI CTAG 1 cut(s) 48
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 1 cut(s) 57
MluCI AATT 2 cut(s) 178, 188
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 6 cut(s) 79, 82, 146, 197, 231, 235
MseI TTAA 3 cut(s) 167, 177, 251
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 2 cut(s) 56, 119
MspR9I CCNGG 3 cut(s) 56, 57, 119
NciI CCSGG 3 cut(s) 56, 57, 119
NdeII GATC 1 cut(s) 121
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 53
PkrI GCNGC 2 cut(s) 39, 227
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 1 cut(s) 215
RsaI GTAC 2 cut(s) 23, 53
RsaNI GTAC 2 cut(s) 22, 52
SaqAI TTAA 3 cut(s) 167, 177, 251
SatI GCNGC 2 cut(s) 38, 226
Sau3AI GATC 1 cut(s) 121
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 3 cut(s) 56, 57, 119
SetI ASST 2 cut(s) 53, 157
SinI GGWCC 1 cut(s) 215
SmaI CCCGGG 1 cut(s) 57
Sse9I AATT 2 cut(s) 178, 188
SsiI CCGC 4 cut(s) 13, 40, 225, 228
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 3 cut(s) 54, 55, 117
TaaI ACNGT 1 cut(s) 26
TaqII GACCGA 1 cut(s) 51
TasI AATT 2 cut(s) 178, 188
TauI GCSGC 1 cut(s) 228
Tru1I TTAA 3 cut(s) 167, 177, 251
Tru9I TTAA 3 cut(s) 167, 177, 251
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 3 cut(s) 80, 117, 200
TspMI CCCGGG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 1 cut(s) 188
XmaI CCCGGG 1 cut(s) 55
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.