Rh7BG218400
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001209
Physical Location & Seq
Reverse (-)
18702504 .. 18703262
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG218400.1

Sequence Viewer

Length: 759 bp
ATGGAGAAGCTTCGCAAGCGGTACCGCGCTGAGAAGCAGCGGGCTTCTGGGTACCCGGGTCGGTTTTCCTCGTCGTGGGCTTTGTTTCATCTCATGGATGAAATGGAGTCCGGCCCGGATCGGGGATTGGATAGTGGTGGTGAGCTTGGAGGTGGGTTTTCGTTAAAGGCTCGTAATTTGGTGAAATTTGATGGAAATGTTGATAGGGATTTTAGTCCTGATGTTGATGAGAATTCTAGCTTTTATTCTGAAGGTGATGATTATGTTAAGCAAGGGTTTAGGCCAAAGAGTAATGGCAAGGCTGATGTGAATCTTAAGCACAGTTTCAGGAAACATGGGGACTATGGAGTTGATATTAGAAGTGATAGGGATTTTGTGCCTGCCGGTTTTCGGCCAAAGAGTAGTGGCATTGTTGATGGGAATGTAAAGCGCAATGTGCGTTTTAAGGAGTTTGATGGGTATTCTTGTTTATCAGGATCAAAGTTTGTGAAGAAGAGTGGTGTTGTTGGGATTAAGAGAGATGTGGATCCTGTTGAAGACTTGGCTTCATCGATTATGCGGTTGGGAGAAGGGTTTGTGAGGATGGAGAAAATGAAGATGGAAATGACAATGGAGATTGAGAAGATGCGAATGGAGATGGAGCTGAAGCGTAATGAGGCCATGATTGAATCCCACCAGCAGATTGTGGATGCTTTTGTGAATGCATTATTGGAAAGGAAGAAGAAAAAGAAGGCCAAGGTGGAGTCTTCCCATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

252

Amino Acids

28.6

Weight (kDa)

9.28

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 21, 51
AccB1I GGYRCC 2 cut(s) 21, 51
AccII CGCG 1 cut(s) 27
AciI CCGC 4 cut(s) 19, 25, 40, 559
AclWI GGATC 4 cut(s) 126, 484, 521, 534
AcoI YGGCCR 1 cut(s) 392
AcsI RAATTY 2 cut(s) 185, 232
AcuI CTGAAG 2 cut(s) 270, 665
AfaI GTAC 2 cut(s) 23, 53
AfiI CCNNNNNNNGG 4 cut(s) 75, 121, 122, 390
AflII CTTAAG 1 cut(s) 314
AgsI TTSAA 2 cut(s) 536, 668
AjuI GAANNNNNNNTTGG 2 cut(s) 692, 724
AluBI AGCT 4 cut(s) 10, 145, 240, 643
AluI AGCT 4 cut(s) 10, 145, 240, 643
AlwI GGATC 4 cut(s) 126, 484, 521, 534
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 5 cut(s) 112, 281, 392, 657, 732
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 2 cut(s) 185, 232
Asp718I GGTACC 2 cut(s) 21, 51
AspLEI GCGC 2 cut(s) 29, 432
AspS9I GGNCC 1 cut(s) 113
AsuC2I CCSGG 3 cut(s) 56, 57, 116
AsuHPI GGTGA 3 cut(s) 152, 193, 266
AvaI CYCGRG 1 cut(s) 55
BaeI ACNNNNGTAYC 2 cut(s) 43, 76
BamHI GGATCC 1 cut(s) 526
BanI GGYRCC 2 cut(s) 21, 51
BbsI GAAGAC 2 cut(s) 543, 738
BbvI GCAGC 1 cut(s) 49
BccI CCATC 6 cut(s) 185, 410, 449, 577, 592, 631
BcnI CCSGG 3 cut(s) 56, 57, 116
BfaI CTAG 1 cut(s) 237
BfrI CTTAAG 1 cut(s) 314
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 3 cut(s) 56, 57, 116
BmeT110I CYCGRG 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 3 cut(s) 23, 53, 528
BmrFI CCNGG 3 cut(s) 56, 57, 116
BmsI GCATC 2 cut(s) 615, 679
BpiI GAAGAC 2 cut(s) 543, 738
BpuMI CCSGG 3 cut(s) 56, 57, 116
Bsa29I ATCGAT 1 cut(s) 551
BsaBI GATNNNNATC 2 cut(s) 309, 525
BsaJI CCNNGG 2 cut(s) 55, 735
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 121, 122, 390
Bse118I RCCGGY 1 cut(s) 383
Bse3DI GCAATG 1 cut(s) 439
Bse8I GATNNNNATC 2 cut(s) 309, 525
BseCI ATCGAT 1 cut(s) 551
BseDI CCNNGG 2 cut(s) 55, 735
BseGI GGATG 3 cut(s) 103, 588, 694
BseJI GATNNNNATC 2 cut(s) 309, 525
BseLI CCNNNNNNNGG 4 cut(s) 75, 121, 122, 390
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 5 cut(s) 114, 283, 394, 659, 734
BshNI GGYRCC 2 cut(s) 21, 51
BshVI ATCGAT 1 cut(s) 551
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 4 cut(s) 56, 111, 116, 384
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 4 cut(s) 75, 121, 122, 390
BsmFI GGGAC 1 cut(s) 353
BsmI GAATGC 1 cut(s) 706
BsnI GGCC 5 cut(s) 114, 283, 394, 659, 734
BsoBI CYCGRG 1 cut(s) 55
Bsp143I GATC 3 cut(s) 118, 476, 526
BspACI CCGC 4 cut(s) 19, 25, 40, 559
BspANI GGCC 5 cut(s) 114, 283, 394, 659, 734
BspCNI CTCAG 1 cut(s) 22
BspDI ATCGAT 1 cut(s) 551
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 3 cut(s) 23, 53, 528
BspPI GGATC 4 cut(s) 126, 484, 521, 534
BspT107I GGYRCC 2 cut(s) 21, 51
BspTI CTTAAG 1 cut(s) 314
BsrDI GCAATG 1 cut(s) 439
BsrFI RCCGGY 1 cut(s) 383
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 2 cut(s) 55, 735
BssMI GATC 3 cut(s) 118, 476, 526
BssT1I CCWWGG 1 cut(s) 735
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 1 cut(s) 488
BstAFI CTTAAG 1 cut(s) 314
BstC8I GCNNGC 3 cut(s) 17, 42, 381
BstDEI CTNAG 2 cut(s) 30, 756
BstF5I GGATG 3 cut(s) 103, 588, 694
BstFNI CGCG 1 cut(s) 27
BstHHI GCGC 2 cut(s) 29, 432
BstKTI GATC 3 cut(s) 121, 479, 529
BstMBI GATC 3 cut(s) 118, 476, 526
BstMWI GCNNNNNNNGC 2 cut(s) 16, 436
BstSCI CCNGG 3 cut(s) 54, 55, 114
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 2 cut(s) 543, 738
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
Bsu15I ATCGAT 1 cut(s) 551
BsuRI GGCC 5 cut(s) 114, 283, 394, 659, 734
BsuTUI ATCGAT 1 cut(s) 551
BtsCI GGATG 3 cut(s) 103, 588, 694
Cac8I GCNNGC 3 cut(s) 17, 42, 381
CfoI GCGC 2 cut(s) 29, 432
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 1 cut(s) 113
Cfr9I CCCGGG 1 cut(s) 55
ClaI ATCGAT 1 cut(s) 551
Csp6I GTAC 2 cut(s) 22, 52
CviAII CATG 4 cut(s) 94, 335, 661, 752
CviQI GTAC 2 cut(s) 22, 52
DdeI CTNAG 2 cut(s) 30, 756
DpnI GATC 3 cut(s) 120, 478, 528
DpnII GATC 3 cut(s) 118, 476, 526
EaeI YGGCCR 1 cut(s) 392
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Eco130I CCWWGG 1 cut(s) 735
Eco57I CTGAAG 2 cut(s) 270, 665
Eco88I CYCGRG 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 735
EcoT22I ATGCAT 1 cut(s) 706
ErhI CCWWGG 1 cut(s) 735
FaeI CATG 4 cut(s) 97, 338, 664, 755
FaiI YATR 7 cut(s) 95, 264, 336, 345, 557, 662, 753
FaqI GGGAC 1 cut(s) 353
FatI CATG 4 cut(s) 93, 334, 660, 751
FauI CCCGC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 3 cut(s) 110, 595, 701
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 237
GlaI GCGC 2 cut(s) 28, 431
GluI GCNGC 1 cut(s) 38
HaeIII GGCC 5 cut(s) 114, 283, 394, 659, 734
HapII CCGG 4 cut(s) 56, 111, 116, 384
HhaI GCGC 2 cut(s) 29, 432
Hin1II CATG 4 cut(s) 97, 338, 664, 755
Hin6I GCGC 2 cut(s) 27, 430
HinP1I GCGC 2 cut(s) 27, 430
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 4 cut(s) 107, 310, 668, 743
HpaII CCGG 4 cut(s) 56, 111, 116, 384
HphI GGTGA 3 cut(s) 152, 193, 266
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 3 cut(s) 218, 328, 474
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 3 cut(s) 245, 563, 724
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4V TGCA 1 cut(s) 704
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 436
HpyF3I CTNAG 2 cut(s) 30, 756
Hsp92II CATG 4 cut(s) 97, 338, 664, 755
HspAI GCGC 2 cut(s) 27, 430
KpnI GGTACC 2 cut(s) 25, 55
Kzo9I GATC 3 cut(s) 118, 476, 526
LmnI GCTCC 1 cut(s) 640
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 2 cut(s) 615, 679
MaeI CTAG 1 cut(s) 237
MalI GATC 3 cut(s) 120, 478, 528
MboI GATC 3 cut(s) 118, 476, 526
MboII GAAGA 8 cut(s) 502, 505, 548, 607, 634, 730, 733, 738
MflI RGATCY 1 cut(s) 526
MluCI AATT 3 cut(s) 175, 185, 232
MlyI GAGTC 2 cut(s) 116, 752
MnlI CCTC 4 cut(s) 79, 143, 573, 649
Mph1103I ATGCAT 1 cut(s) 706
MseI TTAA 5 cut(s) 164, 267, 315, 444, 513
MspA1I CMGCKG 1 cut(s) 40
MspCI CTTAAG 1 cut(s) 314
MspI CCGG 4 cut(s) 56, 111, 116, 384
MspR9I CCNGG 3 cut(s) 56, 57, 116
Mva1269I GAATGC 1 cut(s) 706
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 16, 436
NciI CCSGG 3 cut(s) 56, 57, 116
NdeII GATC 3 cut(s) 118, 476, 526
NlaIII CATG 4 cut(s) 97, 338, 664, 755
NlaIV GGNNCC 3 cut(s) 23, 53, 528
NsiI ATGCAT 1 cut(s) 706
PctI GAATGC 1 cut(s) 706
PfeI GAWTC 2 cut(s) 310, 668
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 2 cut(s) 115, 751
PpsI GAGTC 2 cut(s) 115, 751
PspN4I GGNNCC 3 cut(s) 23, 53, 528
PspPI GGNCC 1 cut(s) 113
PsuI RGATCY 1 cut(s) 526
RsaI GTAC 2 cut(s) 23, 53
RsaNI GTAC 2 cut(s) 22, 52
SaqAI TTAA 5 cut(s) 164, 267, 315, 444, 513
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 3 cut(s) 118, 476, 526
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 2 cut(s) 116, 752
ScrFI CCNGG 3 cut(s) 56, 57, 116
SetI ASST 7 cut(s) 12, 147, 154, 242, 256, 645, 741
SfaNI GCATC 2 cut(s) 615, 679
SmaI CCCGGG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 3 cut(s) 175, 185, 232
SsiI CCGC 4 cut(s) 19, 25, 40, 559
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 3 cut(s) 54, 55, 114
StyI CCWWGG 1 cut(s) 735
TaaI ACNGT 1 cut(s) 323
TaqI TCGA 1 cut(s) 551
TasI AATT 3 cut(s) 175, 185, 232
TfiI GAWTC 2 cut(s) 310, 668
Tru1I TTAA 5 cut(s) 164, 267, 315, 444, 513
Tru9I TTAA 5 cut(s) 164, 267, 315, 444, 513
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 4 cut(s) 77, 114, 537, 608
TspMI CCCGGG 1 cut(s) 55
Vha464I CTTAAG 1 cut(s) 314
XapI RAATTY 2 cut(s) 185, 232
XmaI CCCGGG 1 cut(s) 55
XspI CTAG 1 cut(s) 237
Zsp2I ATGCAT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.