MD06G1046900.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0001209
Physical Location & Seq
Forward (+)
6330899 .. 6332807
1909 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1046900.v1.1.491

Sequence Viewer

Length: 1062 bp
ATGGCCTCACCCACCGAACCCAAACCCCGCAAGTTCCCACCACCCTGCTGGACCCACGACGAGTCCCACGCCCTCATCTCCCTCTACAAGGACCGATGGTTAGCTCTCGGCCGATCCAACCTCAAATCTGCCGACTGGGACTCCGTTGCGTCCTCCGTCAACGACCAATGCCCCCTCGTCTCTCCCCCCAAGACCGCCATACAGTGCCGTCACAAGATGGAGAAGCTCCGGAGGCGCTTTCGGACTGAGAAAGAGCGCGCTTCCACTCATCCAGGTCCGGCACCCTTTTTTTCCTCCTTTGATCTGTTTCAGCCTATGATCGACTTGGAATGCGACTCTCCTTTGGTTTTCGGGTCCAACCCAGATCCGGAAAACCGCATCGCTGTTGAATATGGAGGTGGGTTTCGGGCCAGAAATGATGAAAGTTTCAGGTATTTAGCTGATTCTGATCCAAATTTGAGTGACCCATATGAGACAACCTCAAAAGGTTCCGGATTCGGAGGTGGGTTTCGGGTCAAAAATCTTGTTCGAGGTCCGAATTCAGGACTTTCAGCTGGTTTTGATCGATATGGTAGTCGAGGAAGTGATGGTGGTAGTGGGTTTCCTGTAAAATCATTGGGGGATAGGAATTTCTGGCCTTCAGATTTTAGGAGCAAGAGTTACGGTAAAAGTAACGACAAGTTTAATCCCAAGCTTATCTCGAAGCGTAGTGGCAGCAATGGAGTTGGTTCAGGGAGCAGATTTAATCAGAAATTCAAAGGGAGTTTGCATTCTAATGGCGTCGGTATGGAAGATTTAGGTGGGAGTTCATCTGGGAAAGGGACGGATGATCCGATTGAAGCGATGGCGTCTTCGATAGAGTTTTTGGGAGAAGTGTTTGTGAAGATGGAGAAGAGGAAGATGGAGATGGCCGGGGAGATGGCGAAGATGAGAATGAAGATGGAGATGAAGCAAAATCAGCTGGTAATGGAATCGCAGAAGCAGATGGTGGATGCTTGTGTGAATGCGTTGTGGGAAACCAAGAAGAAGAAGAAGAAGGTCGTCTCGCTTGACGATTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

354

Amino Acids

39.09

Weight (kDa)

9.32

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 15 - 101 1.1e-14 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 280
AccII CGCG 1 cut(s) 258
AccIII TCCGGA 3 cut(s) 228, 367, 491
AciI CCGC 3 cut(s) 28, 195, 376
AclWI GGATC 4 cut(s) 108, 359, 443, 824
AcoI YGGCCR 2 cut(s) 109, 909
AcsI RAATTY 4 cut(s) 454, 538, 628, 752
AcuI CTGAAG 1 cut(s) 624
AcyI GRCGYC 2 cut(s) 780, 848
AfiI CCNNNNNNNGG 3 cut(s) 88, 367, 542
AgsI TTSAA 3 cut(s) 389, 757, 839
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 6 cut(s) 104, 226, 440, 554, 694, 961
AluI AGCT 6 cut(s) 104, 226, 440, 554, 694, 961
Alw26I GTCTC 3 cut(s) 184, 467, 1048
AlwI GGATC 4 cut(s) 108, 359, 443, 824
Aor13HI TCCGGA 3 cut(s) 228, 367, 491
AoxI GGCC 5 cut(s) 3, 109, 408, 635, 909
ApeKI GCWGC 1 cut(s) 714
ApoI RAATTY 4 cut(s) 454, 538, 628, 752
AspLEI GCGC 3 cut(s) 237, 258, 260
AspS9I GGNCC 6 cut(s) 51, 91, 275, 354, 408, 533
AsuC2I CCSGG 1 cut(s) 913
AvaII GGWCC 5 cut(s) 51, 91, 275, 354, 533
BanI GGYRCC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 843
BbvI GCAGC 1 cut(s) 726
BceAI ACGGC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 273
BcnI CCSGG 1 cut(s) 913
BcoDI GTCTC 3 cut(s) 184, 467, 1048
BfoI RGCGCY 1 cut(s) 238
BisI GCNGC 1 cut(s) 715
BlsI GCNGC 1 cut(s) 716
Bme1390I CCNGG 2 cut(s) 273, 913
Bme18I GGWCC 5 cut(s) 51, 91, 275, 354, 533
BmgT120I GGNCC 6 cut(s) 51, 91, 275, 354, 408, 533
BmiI GGNNCC 4 cut(s) 53, 282, 355, 490
BmrFI CCNGG 2 cut(s) 273, 913
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 387, 982
BmuI ACTGGG 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 843
BplI GAGNNNNNCTC 2 cut(s) 464, 496
BpuMI CCSGG 1 cut(s) 913
Bsa29I ATCGAT 1 cut(s) 565
BsaBI GATNNNNATC 1 cut(s) 447
BsaHI GRCGYC 2 cut(s) 780, 848
BsaJI CCNNGG 1 cut(s) 912
BsaWI WCCGGW 3 cut(s) 228, 367, 491
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 643, 673
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 367, 542
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 724
Bse8I GATNNNNATC 1 cut(s) 447
BseAI TCCGGA 3 cut(s) 228, 367, 491
BseBI CCWGG 1 cut(s) 273
BseCI ATCGAT 1 cut(s) 565
BseDI CCNNGG 1 cut(s) 912
BseGI GGATG 3 cut(s) 268, 832, 997
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 3 cut(s) 88, 367, 542
BseMI GCAATG 1 cut(s) 724
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 140
BsePI GCGCGC 1 cut(s) 256
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 726
Bsh1236I CGCG 1 cut(s) 258
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 5 cut(s) 5, 111, 410, 637, 911
BshNI GGYRCC 1 cut(s) 280
BshVI ATCGAT 1 cut(s) 565
BsiEI CGRYCG 1 cut(s) 112
BsiSI CCGG 5 cut(s) 229, 278, 368, 492, 912
BslFI GGGAC 3 cut(s) 49, 152, 835
BslI CCNNNNNNNGG 3 cut(s) 88, 367, 542
BsmAI GTCTC 3 cut(s) 184, 467, 1048
BsmBI CGTCTC 2 cut(s) 184, 1048
BsmFI GGGAC 3 cut(s) 49, 152, 835
BsmI GAATGC 3 cut(s) 335, 769, 1009
BsnI GGCC 5 cut(s) 5, 111, 410, 637, 911
Bsp13I TCCGGA 3 cut(s) 228, 367, 491
Bsp143I GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
BspACI CCGC 3 cut(s) 28, 195, 376
BspANI GGCC 5 cut(s) 5, 111, 410, 637, 911
BspCNI CTCAG 1 cut(s) 238
BspDI ATCGAT 1 cut(s) 565
BspEI TCCGGA 3 cut(s) 228, 367, 491
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 4 cut(s) 53, 282, 355, 490
BspPI GGATC 4 cut(s) 108, 359, 443, 824
BspT107I GGYRCC 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 724
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 912
BssHII GCGCGC 1 cut(s) 256
BssMI GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
BssNI GRCGYC 2 cut(s) 780, 848
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 204, 665
Bst6I CTCTTC 1 cut(s) 887
BstACI GRCGYC 2 cut(s) 780, 848
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 246
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 3 cut(s) 268, 832, 997
BstFNI CGCG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 3 cut(s) 237, 258, 260
BstKTI GATC 7 cut(s) 116, 304, 321, 367, 451, 565, 832
BstMAI GTCTC 3 cut(s) 184, 467, 1048
BstMBI GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 232, 958
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 2 cut(s) 271, 911
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 726
BstV2I GAAGAC 1 cut(s) 843
BstX2I RGATCY 1 cut(s) 364
BstXI CCANNNNNNTGG 1 cut(s) 48
BstYI RGATCY 1 cut(s) 364
BstZI CGGCCG 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 565
BsuRI GGCC 5 cut(s) 5, 111, 410, 637, 911
BsuTUI ATCGAT 1 cut(s) 565
BtgZI GCGATG 2 cut(s) 364, 857
BtsCI GGATG 3 cut(s) 268, 832, 997
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 258
CfoI GCGC 3 cut(s) 237, 258, 260
Cfr13I GGNCC 6 cut(s) 51, 91, 275, 354, 408, 533
ClaI ATCGAT 1 cut(s) 565
CseI GACGC 3 cut(s) 138, 769, 837
DdeI CTNAG 1 cut(s) 246
DpnI GATC 7 cut(s) 115, 303, 320, 366, 450, 564, 831
DpnII GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
EaeI YGGCCR 2 cut(s) 109, 909
EagI CGGCCG 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 887
EarI CTCTTC 1 cut(s) 887
EclXI CGGCCG 1 cut(s) 109
Eco47I GGWCC 5 cut(s) 51, 91, 275, 354, 533
Eco52I CGGCCG 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 624
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 271
Esp3I CGTCTC 2 cut(s) 184, 1048
FaiI YATR 7 cut(s) 200, 317, 393, 469, 471, 570, 788
FaqI GGGAC 3 cut(s) 49, 152, 835
FauI CCCGC 1 cut(s) 35
FauNDI CATATG 1 cut(s) 469
Fnu4HI GCNGC 1 cut(s) 715
FokI GGATG 3 cut(s) 255, 839, 1004
Fsp4HI GCNGC 1 cut(s) 715
GlaI GCGC 3 cut(s) 236, 257, 259
GluI GCNGC 1 cut(s) 715
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 5 cut(s) 5, 111, 410, 637, 911
HapII CCGG 5 cut(s) 229, 278, 368, 492, 912
HgaI GACGC 3 cut(s) 138, 769, 837
HhaI GCGC 3 cut(s) 237, 258, 260
Hin1I GRCGYC 2 cut(s) 780, 848
Hin6I GCGC 3 cut(s) 235, 256, 258
HinP1I GCGC 3 cut(s) 235, 256, 258
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 7 cut(s) 62, 140, 335, 443, 495, 971, 1055
HpaII CCGG 5 cut(s) 229, 278, 368, 492, 912
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 7 cut(s) 243, 448, 500, 537, 643, 750, 834
Hpy188III TCNNGA 5 cut(s) 229, 368, 492, 543, 700
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 2 cut(s) 62, 785
HpyAV CCTTC 2 cut(s) 648, 1030
HpyCH4III ACNGT 2 cut(s) 204, 665
HpyCH4V TGCA 1 cut(s) 769
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 958
HpyF3I CTNAG 1 cut(s) 246
Hsp92I GRCGYC 2 cut(s) 780, 848
HspAI GCGC 3 cut(s) 235, 256, 258
Kpn2I TCCGGA 3 cut(s) 228, 367, 491
Kzo9I GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
LmnI GCTCC 3 cut(s) 231, 651, 735
Lsp1109I GCAGC 1 cut(s) 726
LweI GCATC 2 cut(s) 387, 982
MaeIII GTNAC 4 cut(s) 209, 461, 659, 671
MalI GATC 7 cut(s) 115, 303, 320, 366, 450, 564, 831
MboI GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
MflI RGATCY 1 cut(s) 364
MluCI AATT 4 cut(s) 454, 538, 628, 752
MlyI GAGTC 3 cut(s) 71, 134, 329
MmeI TCCRAC 2 cut(s) 141, 381
MroI TCCGGA 3 cut(s) 228, 367, 491
MseI TTAA 2 cut(s) 684, 744
MslI CAYNNNNRTG 1 cut(s) 774
MspA1I CMGCKG 2 cut(s) 554, 961
MspI CCGG 5 cut(s) 229, 278, 368, 492, 912
MspR9I CCNGG 2 cut(s) 273, 913
Mva1269I GAATGC 3 cut(s) 335, 769, 1009
MvaI CCWGG 1 cut(s) 273
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 2 cut(s) 232, 958
NciI CCSGG 1 cut(s) 913
NdeI CATATG 1 cut(s) 469
NdeII GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
NlaIV GGNNCC 4 cut(s) 53, 282, 355, 490
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 2 cut(s) 209, 461
PauI GCGCGC 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 830
PctI GAATGC 3 cut(s) 335, 769, 1009
PfeI GAWTC 4 cut(s) 443, 495, 971, 1055
PkrI GCNGC 1 cut(s) 716
PleI GAGTC 3 cut(s) 70, 134, 329
PpsI GAGTC 3 cut(s) 70, 134, 329
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 4 cut(s) 53, 282, 355, 490
PspPI GGNCC 6 cut(s) 51, 91, 275, 354, 408, 533
PsuI RGATCY 1 cut(s) 364
PteI GCGCGC 1 cut(s) 256
PvuII CAGCTG 2 cut(s) 554, 961
RseI CAYNNNNRTG 1 cut(s) 774
SaqAI TTAA 2 cut(s) 684, 744
SatI GCNGC 1 cut(s) 715
Sau3AI GATC 7 cut(s) 113, 301, 318, 364, 448, 562, 829
Sau96I GGNCC 6 cut(s) 51, 91, 275, 354, 408, 533
SchI GAGTC 3 cut(s) 71, 134, 329
ScrFI CCNGG 2 cut(s) 273, 913
SfaNI GCATC 2 cut(s) 387, 982
SinI GGWCC 5 cut(s) 51, 91, 275, 354, 533
SmiMI CAYNNNNRTG 1 cut(s) 774
Sse9I AATT 4 cut(s) 454, 538, 628, 752
SsiI CCGC 3 cut(s) 28, 195, 376
StyD4I CCNGG 2 cut(s) 271, 911
TaaI ACNGT 2 cut(s) 204, 665
TaqI TCGA 6 cut(s) 321, 529, 565, 577, 701, 854
TaqII GACCGA 1 cut(s) 108
TasI AATT 4 cut(s) 454, 538, 628, 752
TfiI GAWTC 4 cut(s) 443, 495, 971, 1055
Tru1I TTAA 2 cut(s) 684, 744
Tru9I TTAA 2 cut(s) 684, 744
TscAI CASTG 1 cut(s) 209
TseFI GTSAC 2 cut(s) 209, 461
TseI GCWGC 1 cut(s) 714
Tsp45I GTSAC 2 cut(s) 209, 461
TspDTI ATGAA 4 cut(s) 435, 798, 950, 962
TspGWI ACGGA 3 cut(s) 133, 145, 839
TspRI CASTG 1 cut(s) 209
VpaK11BI GGWCC 5 cut(s) 51, 91, 275, 354, 533
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 4 cut(s) 454, 538, 628, 752
XcmI CCANNNNNNNNNTGG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.