MD04G1055300.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0001209
Physical Location & Seq
Forward (+)
6614609 .. 6615673
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1055300.v1.1.491

Sequence Viewer

Length: 1065 bp
ATGTCCCCACCCGCCGAACCCAAATCCCGCACGTTCCCACCGCCCTGCTGGACCCACGACGAGTCCCACGCCCTTATCGCCGTCTACAAGGACCGATGGTTAACTCTCGGCCGATCCAATCTCAAATCCGCCGACTGGGACTCCGTTGCGTCCTCTGTCAATGACCGATGCCCGCTTGTCTCGCCGCCCAAGACCGCCATACAGTGCCGTCACAAGATGGAGAAGCTCCGGAGGCGCTTTCGGACTGAGAAAGAACGCGCTTCCATACACCCGGATCCGGCTCCGTTTTTCTCTGCCTGGGATCTGTTTCAGCCCATGATCGACTTGGAATGCGACTCTCCTTTCGTTTTCGGGTCCAACCCAGATCTGGAAATCCGCGTCGGTGTCCAATATGGAGGGGGGTTTCGGGTCAGAAATTATGAAAGTTACAGGTACTTAGCTGATTCTGATCAAAATTTGAGTGACCCAGATGAGACAACCCCAAAAGGTGCCGGATTCGGAGGTGGGTTTCGGGTCAAAGATCCTGTTCGAGGTCCGAATTCAGGAGTTTCAGCTGGTTATGATCGATATGGTAGTCGAGGAAGTGATGGTGGTAGTGAGTTTCCTGTAAAATCATTGGGGGATAGGAATTTGGGGCCTTCAGATTTTAGGATCAAGGGTTATGGTAAAAGTAACGAGAAGTTTAATCCCAAGCTTATCTCGAAGCGCAGTGGCAGCAATGGAGTTGGTTCAAGGAGTGGGTTTAATCAGAAATTTCGAGGGGGTATGCATTCTAATGGTGTTGGTTTAGAAGATTTGGGTGGGAGTTCATCCGGGAAAGGGGCGGATGATCCGATTGAAGCGATGGCGTCTTCCATAGAGTTTCTGGGAGAAGTGTTTGTGAAGATGGAGAAGAGGAAGATGGAGATGGCGGGGGAGATGGCGAAGATGAGAATGAAGATGGAGATGAAGCAAAATCAGCTGATAATGGAGTCAGAGAAGCAGATGGTGGATGCTTGTGTGAAGGCATTGTGGGAAACCAAGAGGAAGAAGAAGATGAAGGTCGTCTCGCTTGACGAATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

355

Amino Acids

39.34

Weight (kDa)

9.18

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 15 - 101 2e-14 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 488
AccI GTMKAC 1 cut(s) 84
AccII CGCG 2 cut(s) 258, 378
AccIII TCCGGA 1 cut(s) 228
AclWI GGATC 7 cut(s) 108, 269, 282, 309, 515, 659, 824
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 4 cut(s) 454, 538, 628, 752
AcuI CTGAAG 1 cut(s) 624
AcyI GRCGYC 1 cut(s) 848
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 6 cut(s) 135, 277, 367, 530, 542, 819
AgsI TTSAA 2 cut(s) 732, 839
AjnI CCWGG 1 cut(s) 296
AluBI AGCT 5 cut(s) 226, 440, 554, 694, 961
AluI AGCT 5 cut(s) 226, 440, 554, 694, 961
Alw26I GTCTC 3 cut(s) 184, 467, 1051
AlwI GGATC 7 cut(s) 108, 269, 282, 309, 515, 659, 824
Aor13HI TCCGGA 1 cut(s) 228
AoxI GGCC 2 cut(s) 109, 635
ApeKI GCWGC 1 cut(s) 714
ApoI RAATTY 4 cut(s) 454, 538, 628, 752
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 3 cut(s) 237, 260, 708
AspS9I GGNCC 5 cut(s) 51, 91, 354, 533, 635
AsuC2I CCSGG 2 cut(s) 272, 814
AvaII GGWCC 4 cut(s) 51, 91, 354, 533
BamHI GGATCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 488
BbsI GAAGAC 1 cut(s) 843
BbvI GCAGC 1 cut(s) 726
BceAI ACGGC 2 cut(s) 65, 192
BciT130I CCWGG 1 cut(s) 298
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 2 cut(s) 272, 814
BcoDI GTCTC 3 cut(s) 184, 467, 1051
BfoI RGCGCY 1 cut(s) 238
BglII AGATCT 1 cut(s) 364
BisI GCNGC 2 cut(s) 185, 715
BlsI GCNGC 2 cut(s) 186, 716
Bme1390I CCNGG 3 cut(s) 272, 298, 814
Bme18I GGWCC 4 cut(s) 51, 91, 354, 533
BmgT120I GGNCC 5 cut(s) 51, 91, 354, 533, 635
BmiI GGNNCC 6 cut(s) 53, 276, 282, 355, 490, 636
BmrFI CCNGG 3 cut(s) 272, 298, 814
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 2 cut(s) 158, 982
BmuI ACTGGG 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 843
BpuMI CCSGG 2 cut(s) 272, 814
Bsa29I ATCGAT 1 cut(s) 565
BsaBI GATNNNNATC 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 848
BsaJI CCNNGG 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 6 cut(s) 135, 277, 367, 530, 542, 819
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 724
Bse8I GATNNNNATC 1 cut(s) 447
BseAI TCCGGA 1 cut(s) 228
BseBI CCWGG 1 cut(s) 298
BseCI ATCGAT 1 cut(s) 565
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 3 cut(s) 809, 832, 997
BseJI GATNNNNATC 1 cut(s) 447
BseLI CCNNNNNNNGG 6 cut(s) 135, 277, 367, 530, 542, 819
BseMI GCAATG 1 cut(s) 724
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 140
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 726
Bsh1236I CGCG 2 cut(s) 258, 378
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 111, 637
BshNI GGYRCC 1 cut(s) 488
BshVI ATCGAT 1 cut(s) 565
BsiEI CGRYCG 1 cut(s) 112
BsiSI CCGG 5 cut(s) 229, 272, 278, 492, 813
BslFI GGGAC 2 cut(s) 49, 152
BslI CCNNNNNNNGG 6 cut(s) 135, 277, 367, 530, 542, 819
BsmAI GTCTC 3 cut(s) 184, 467, 1051
BsmBI CGTCTC 1 cut(s) 1051
BsmFI GGGAC 2 cut(s) 49, 152
BsmI GAATGC 2 cut(s) 335, 769
BsnI GGCC 2 cut(s) 111, 637
Bsp13I TCCGGA 1 cut(s) 228
BspANI GGCC 2 cut(s) 111, 637
BspCNI CTCAG 1 cut(s) 238
BspDI ATCGAT 1 cut(s) 565
BspEI TCCGGA 1 cut(s) 228
BspFNI CGCG 2 cut(s) 258, 378
BspLI GGNNCC 6 cut(s) 53, 276, 282, 355, 490, 636
BspPI GGATC 7 cut(s) 108, 269, 282, 309, 515, 659, 824
BspT107I GGYRCC 1 cut(s) 488
BsrDI GCAATG 1 cut(s) 724
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 297
BssNI GRCGYC 1 cut(s) 848
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 1 cut(s) 204
Bst6I CTCTTC 1 cut(s) 887
BstACI GRCGYC 1 cut(s) 848
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 2 cut(s) 246, 436
BstENI CCTNNNNNAGG 1 cut(s) 528
BstF5I GGATG 3 cut(s) 809, 832, 997
BstFNI CGCG 2 cut(s) 258, 378
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 3 cut(s) 237, 260, 708
BstMAI GTCTC 3 cut(s) 184, 467, 1051
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 5 cut(s) 77, 181, 232, 714, 958
BstNI CCWGG 1 cut(s) 298
BstSCI CCNGG 3 cut(s) 270, 296, 812
BstUI CGCG 2 cut(s) 258, 378
BstV1I GCAGC 1 cut(s) 726
BstV2I GAAGAC 1 cut(s) 843
BstX2I RGATCY 4 cut(s) 274, 301, 364, 520
BstYI RGATCY 4 cut(s) 274, 301, 364, 520
BstZI CGGCCG 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 565
BsuRI GGCC 2 cut(s) 111, 637
BsuTUI ATCGAT 1 cut(s) 565
BtgZI GCGATG 1 cut(s) 857
BtsCI GGATG 3 cut(s) 809, 832, 997
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 2 cut(s) 209, 715
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 3 cut(s) 237, 260, 708
Cfr13I GGNCC 5 cut(s) 51, 91, 354, 533, 635
ClaI ATCGAT 1 cut(s) 565
CseI GACGC 3 cut(s) 138, 367, 837
Csp6I GTAC 1 cut(s) 433
CviAII CATG 1 cut(s) 316
CviJI RGCY 9 cut(s) 111, 226, 281, 313, 440, 554, 637, 694, 961
CviKI_1 RGCY 9 cut(s) 111, 226, 281, 313, 440, 554, 637, 694, 961
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 2 cut(s) 246, 436
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 887
EarI CTCTTC 1 cut(s) 887
EciI GGCGGA 2 cut(s) 118, 839
EclXI CGGCCG 1 cut(s) 109
Eco47I GGWCC 4 cut(s) 51, 91, 354, 533
Eco52I CGGCCG 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 624
EcoNI CCTNNNNNAGG 1 cut(s) 528
EcoO109I RGGNCCY 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 296
EcoT22I ATGCAT 1 cut(s) 771
Esp3I CGTCTC 1 cut(s) 1051
FaeI CATG 1 cut(s) 319
FaqI GGGAC 2 cut(s) 49, 152
FatI CATG 1 cut(s) 315
FauI CCCGC 4 cut(s) 19, 35, 180, 904
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 2 cut(s) 185, 715
FokI GGATG 3 cut(s) 796, 839, 1004
Fsp4HI GCNGC 2 cut(s) 185, 715
GlaI GCGC 3 cut(s) 236, 259, 707
GluI GCNGC 2 cut(s) 185, 715
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 2 cut(s) 111, 637
HapII CCGG 5 cut(s) 229, 272, 278, 492, 813
HgaI GACGC 3 cut(s) 138, 367, 837
HhaI GCGC 3 cut(s) 237, 260, 708
Hin1I GRCGYC 1 cut(s) 848
Hin1II CATG 1 cut(s) 319
Hin6I GCGC 3 cut(s) 235, 258, 706
HinP1I GCGC 3 cut(s) 235, 258, 706
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 7 cut(s) 62, 140, 335, 443, 495, 971, 1058
HpaI GTTAAC 1 cut(s) 102
HpaII CCGG 5 cut(s) 229, 272, 278, 492, 813
Hpy166II GTNNAC 2 cut(s) 85, 102
Hpy188I TCNGA 9 cut(s) 243, 413, 448, 500, 537, 643, 750, 834, 976
Hpy188III TCNNGA 4 cut(s) 229, 368, 543, 700
Hpy8I GTNNAC 2 cut(s) 85, 102
Hpy99I CGWCG 2 cut(s) 62, 383
HpyAV CCTTC 3 cut(s) 648, 997, 1033
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 769
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 181, 232, 714, 958
HpyF3I CTNAG 2 cut(s) 246, 436
HpySE526I ACGT 1 cut(s) 32
Hsp92I GRCGYC 1 cut(s) 848
Hsp92II CATG 1 cut(s) 319
HspAI GCGC 3 cut(s) 235, 258, 706
Kpn2I TCCGGA 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 448
KspAI GTTAAC 1 cut(s) 102
LmnI GCTCC 2 cut(s) 231, 286
Lsp1109I GCAGC 1 cut(s) 726
LweI GCATC 2 cut(s) 158, 982
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 4 cut(s) 209, 425, 461, 671
MflI RGATCY 4 cut(s) 274, 301, 364, 520
MluCI AATT 5 cut(s) 415, 454, 538, 628, 752
MlyI GAGTC 4 cut(s) 71, 134, 329, 980
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 9 cut(s) 163, 225, 389, 494, 524, 572, 752, 888, 1017
Mph1103I ATGCAT 1 cut(s) 771
MroI TCCGGA 1 cut(s) 228
MseI TTAA 3 cut(s) 101, 684, 744
MslI CAYNNNNRTG 1 cut(s) 774
MspA1I CMGCKG 2 cut(s) 554, 961
MspI CCGG 5 cut(s) 229, 272, 278, 492, 813
MspR9I CCNGG 3 cut(s) 272, 298, 814
Mva1269I GAATGC 2 cut(s) 335, 769
MvaI CCWGG 1 cut(s) 298
MvnI CGCG 2 cut(s) 258, 378
MwoI GCNNNNNNNGC 5 cut(s) 77, 181, 232, 714, 958
NciI CCSGG 2 cut(s) 272, 814
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 6 cut(s) 53, 276, 282, 355, 490, 636
NmeAIII GCCGAG 1 cut(s) 87
NmuCI GTSAC 2 cut(s) 209, 461
NsiI ATGCAT 1 cut(s) 771
PctI GAATGC 2 cut(s) 335, 769
PfeI GAWTC 3 cut(s) 443, 495, 1058
PfoI TCCNGGA 1 cut(s) 812
PkrI GCNGC 2 cut(s) 186, 716
PleI GAGTC 4 cut(s) 70, 134, 329, 979
PpsI GAGTC 4 cut(s) 70, 134, 329, 979
Psp6I CCWGG 1 cut(s) 296
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 6 cut(s) 53, 276, 282, 355, 490, 636
PspPI GGNCC 5 cut(s) 51, 91, 354, 533, 635
PsuI RGATCY 4 cut(s) 274, 301, 364, 520
PvuII CAGCTG 2 cut(s) 554, 961
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 774
SaqAI TTAA 3 cut(s) 101, 684, 744
SatI GCNGC 2 cut(s) 185, 715
Sau96I GGNCC 5 cut(s) 51, 91, 354, 533, 635
SchI GAGTC 4 cut(s) 71, 134, 329, 980
ScrFI CCNGG 3 cut(s) 272, 298, 814
SfaNI GCATC 2 cut(s) 158, 982
SinI GGWCC 4 cut(s) 51, 91, 354, 533
SmiMI CAYNNNNRTG 1 cut(s) 774
Sse9I AATT 5 cut(s) 415, 454, 538, 628, 752
StyD4I CCNGG 3 cut(s) 270, 296, 812
TaaI ACNGT 1 cut(s) 204
TaiI ACGT 1 cut(s) 35
TaqI TCGA 6 cut(s) 321, 529, 565, 577, 701, 757
TaqII GACCGA 2 cut(s) 108, 180
TasI AATT 5 cut(s) 415, 454, 538, 628, 752
TauI GCSGC 1 cut(s) 187
TfiI GAWTC 3 cut(s) 443, 495, 1058
Tru1I TTAA 3 cut(s) 101, 684, 744
Tru9I TTAA 3 cut(s) 101, 684, 744
TscAI CASTG 2 cut(s) 209, 715
TseFI GTSAC 2 cut(s) 209, 461
TseI GCWGC 1 cut(s) 714
Tsp45I GTSAC 2 cut(s) 209, 461
TspDTI ATGAA 5 cut(s) 435, 798, 950, 962, 1052
TspGWI ACGGA 2 cut(s) 133, 273
TspRI CASTG 2 cut(s) 209, 715
VpaK11BI GGWCC 4 cut(s) 51, 91, 354, 533
XagI CCTNNNNNAGG 1 cut(s) 528
XapI RAATTY 4 cut(s) 454, 538, 628, 752
XcmI CCANNNNNNNNNTGG 4 cut(s) 45, 322, 364, 862
XmiI GTMKAC 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.