FvH4_5g20390
MYB Family

Myb/SANT-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
12060320 .. 12062291
1972 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20390.t1

Sequence Viewer

Length: 1176 bp
ATGGTTGGGCTGACCCAGGCACGCACCAGGAGTGGCCCTATCGTGCCGGGAGGGACTCCTTTTCCCTCGCCGCACCGCGCCACCCGCCCACGTCAGCATTACCTCACCGCCTTCATCCACCACCAACCACAATGCCCACCCTTATATCTCTCCTCCTCCACCAAACCCACCACCTCTCCAACAATCATGTCCACCACCGTCGTCACCAAACCCCGCCGGGTCCCACCGCCCTGCTGGACCCAGGACGAGGCCCAATCCCTCATCCTCGCCTACCGCGACCGCTGGTTCGCCCTCCGCCGCGCCAATCTCAAAGCCGCCGACTGGGACCACGTCGCCAAGGCCACCGCCGCCGCTTCCTCCTCCTCCTCCTCGCCGCCGAAGACCGCGCTGCAGTGCCGCCATAAGATGGAGAAGCTTCGCAAGCGGTACCGCGCTGAGAAGCAACGCGCTTCCAACTACCCGGGTCGGTTCTTCTCGTCGTGGGCTTTGTTTCATCTCATGGATGAGATGGAGTCCGACCCGGATCGGAAACCGATTGATGAGGGTGAGTTTGGAGGTAAGGGTCGTAATTTGGTGAATGTTGATAGGAGTTTTAGCCCTAATGGTGATTTTGATGGAATTGGGGGGAGTGTGTTTGATCTAGGAAATGAATTGTATCAGAATTCTAGGTTTAACTACAGATTTGGTGAGAATTCTGGCTTTTATTCTGAGGATAATGAGTATGTTAATCGAGGCGGGTTTCCTTCGAGAACTAGGAGTAATGGCAAGAGTGATGTGAATCTTAACAACAGTTTTAACCAACATAGGGACTATGGAATTAGAAGTGATAGAGACTATGTACCCAGTGGGAGTTTGAAGCGCAATGCCCATTGTAAGGAGTTTGATGGGTATGCTTCTTTATCGGGATCCAAGTTTGGGAAGAAGAGAAGTGTTGTTGGGATGGAGAGAGATGTGGATCCTGTTGCAGACTTGGCTTCCTCGATTATGATGTTGGGAGAGGGGTTTGAGAGGATGGAGAGAATGAAGATGGAAATGACCTGGGAGATTGAGAAGAGGCGGATGGAGACGGAGCTTAAGCGTACTGAGGCCATGAACGAATCACTCCAGCAGTTTGTGGATGCATTGTTGGAAAGGAAGAAGAAAAAGAAGGCGATGGTAGAGTCTTCCCATGCTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

392

Amino Acids

44.43

Weight (kDa)

9.61

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 77 - 170 1.2e-15 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 99 - 167 5.9e-06 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 426
AccB1I GGYRCC 1 cut(s) 426
AccB7I CCANNNNNTGG 1 cut(s) 406
AccII CGCG 6 cut(s) 78, 276, 300, 386, 432, 447
AclWI GGATC 5 cut(s) 531, 900, 913, 950, 963
AcsI RAATTY 2 cut(s) 661, 691
AfaI GTAC 3 cut(s) 428, 840, 1081
AfiI CCNNNNNNNGG 6 cut(s) 247, 321, 406, 805, 874, 915
AflII CTTAAG 1 cut(s) 1073
AgsI TTSAA 1 cut(s) 856
AjiI CACGTC 2 cut(s) 92, 331
AjnI CCWGG 4 cut(s) 15, 26, 240, 1037
AluBI AGCT 2 cut(s) 415, 1072
AluI AGCT 2 cut(s) 415, 1072
Alw26I GTCTC 2 cut(s) 825, 1058
AlwI GGATC 5 cut(s) 531, 900, 913, 950, 963
Ama87I CYCGRG 1 cut(s) 460
AoxI GGCC 4 cut(s) 34, 249, 339, 1086
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 2 cut(s) 661, 691
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
Asp718I GGTACC 1 cut(s) 426
AspLEI GCGC 6 cut(s) 80, 302, 388, 434, 449, 861
AspS9I GGNCC 5 cut(s) 35, 220, 237, 250, 325
AsuC2I CCSGG 5 cut(s) 48, 218, 461, 462, 521
AsuHPI GGTGA 6 cut(s) 97, 196, 557, 586, 617, 698
AvaI CYCGRG 1 cut(s) 460
AvaII GGWCC 3 cut(s) 220, 237, 325
BamHI GGATCC 2 cut(s) 905, 955
BanI GGYRCC 1 cut(s) 426
BbsI GAAGAC 2 cut(s) 386, 1155
BbvI GCAGC 1 cut(s) 375
BccI CCATC 9 cut(s) 400, 502, 608, 878, 934, 1006, 1021, 1054, 1147
BciT130I CCWGG 4 cut(s) 17, 28, 242, 1039
BcnI CCSGG 5 cut(s) 48, 218, 461, 462, 521
BcoDI GTCTC 2 cut(s) 825, 1058
BfaI CTAG 3 cut(s) 641, 666, 753
BfmI CTRYAG 2 cut(s) 389, 676
BfrI CTTAAG 1 cut(s) 1073
BisI GCNGC 8 cut(s) 71, 298, 315, 348, 351, 374, 389, 397
BlsI GCNGC 8 cut(s) 72, 299, 316, 349, 352, 375, 390, 398
Bme1390I CCNGG 9 cut(s) 17, 28, 48, 218, 242, 461, 462, 521, 1039
Bme18I GGWCC 3 cut(s) 220, 237, 325
BmeT110I CYCGRG 1 cut(s) 460
BmgBI CACGTC 2 cut(s) 92, 331
BmgT120I GGNCC 5 cut(s) 35, 220, 237, 250, 325
BmiI GGNNCC 7 cut(s) 221, 222, 239, 326, 428, 907, 957
BmrFI CCNGG 9 cut(s) 17, 28, 48, 218, 242, 461, 462, 521, 1039
BmrI ACTGGG 2 cut(s) 331, 837
BmsI GCATC 1 cut(s) 1108
BmuI ACTGGG 2 cut(s) 331, 837
BpiI GAAGAC 2 cut(s) 386, 1155
BpmI CTGGAG 1 cut(s) 1088
BpuMI CCSGG 5 cut(s) 48, 218, 461, 462, 521
BsaBI GATNNNNATC 2 cut(s) 777, 954
BsaJI CCNNGG 5 cut(s) 15, 240, 336, 460, 1038
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 6 cut(s) 247, 321, 406, 805, 874, 915
Bse1I ACTGG 2 cut(s) 326, 843
Bse3DI GCAATG 1 cut(s) 868
Bse8I GATNNNNATC 2 cut(s) 777, 954
BseBI CCWGG 4 cut(s) 17, 28, 242, 1039
BseDI CCNNGG 5 cut(s) 15, 240, 336, 460, 1038
BseGI GGATG 7 cut(s) 114, 261, 508, 945, 1017, 1065, 1123
BseJI GATNNNNATC 2 cut(s) 777, 954
BseLI CCNNNNNNNGG 6 cut(s) 247, 321, 406, 805, 874, 915
BseMI GCAATG 1 cut(s) 868
BseMII CTCAG 3 cut(s) 426, 699, 1074
BseNI ACTGG 2 cut(s) 326, 843
BseRI GAGGAG 6 cut(s) 142, 145, 349, 352, 355, 358
BseXI GCAGC 1 cut(s) 375
Bsh1236I CGCG 6 cut(s) 78, 276, 300, 386, 432, 447
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 4 cut(s) 36, 251, 341, 1088
BshNI GGYRCC 1 cut(s) 426
BsiEI CGRYCG 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 460
BsiSI CCGG 4 cut(s) 47, 217, 461, 521
BslFI GGGAC 4 cut(s) 67, 206, 338, 821
BslI CCNNNNNNNGG 6 cut(s) 247, 321, 406, 805, 874, 915
BsmAI GTCTC 2 cut(s) 825, 1058
BsmBI CGTCTC 1 cut(s) 1058
BsmFI GGGAC 4 cut(s) 67, 206, 338, 821
BsnI GGCC 4 cut(s) 36, 251, 341, 1088
BsoBI CYCGRG 1 cut(s) 460
Bsp143I GATC 4 cut(s) 523, 637, 905, 955
BspANI GGCC 4 cut(s) 36, 251, 341, 1088
BspCNI CTCAG 3 cut(s) 427, 700, 1075
BspFNI CGCG 6 cut(s) 78, 276, 300, 386, 432, 447
BspLI GGNNCC 7 cut(s) 221, 222, 239, 326, 428, 907, 957
BspMAI CTGCAG 1 cut(s) 393
BspPI GGATC 5 cut(s) 531, 900, 913, 950, 963
BspT107I GGYRCC 1 cut(s) 426
BspTI CTTAAG 1 cut(s) 1073
BsrDI GCAATG 1 cut(s) 868
BsrI ACTGG 2 cut(s) 326, 843
BssECI CCNNGG 5 cut(s) 15, 240, 336, 460, 1038
BssMI GATC 4 cut(s) 523, 637, 905, 955
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 4 cut(s) 17, 28, 242, 1039
Bst4CI ACNGT 2 cut(s) 199, 791
Bst6I CTCTTC 2 cut(s) 917, 1046
BstAFI CTTAAG 1 cut(s) 1073
BstC8I GCNNGC 2 cut(s) 22, 422
BstDEI CTNAG 4 cut(s) 435, 708, 1083, 1173
BstF5I GGATG 7 cut(s) 114, 261, 508, 945, 1017, 1065, 1123
BstFNI CGCG 6 cut(s) 78, 276, 300, 386, 432, 447
BstHHI GCGC 6 cut(s) 80, 302, 388, 434, 449, 861
BstKTI GATC 4 cut(s) 526, 640, 908, 958
BstMAI GTCTC 2 cut(s) 825, 1058
BstMBI GATC 4 cut(s) 523, 637, 905, 955
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 4 cut(s) 84, 347, 421, 971
BstNI CCWGG 4 cut(s) 17, 28, 242, 1039
BstSCI CCNGG 9 cut(s) 15, 26, 46, 216, 240, 459, 460, 519, 1037
BstSFI CTRYAG 2 cut(s) 389, 676
BstUI CGCG 6 cut(s) 78, 276, 300, 386, 432, 447
BstV1I GCAGC 1 cut(s) 375
BstV2I GAAGAC 2 cut(s) 386, 1155
BstX2I RGATCY 2 cut(s) 905, 955
BstYI RGATCY 2 cut(s) 905, 955
BsuRI GGCC 4 cut(s) 36, 251, 341, 1088
BtgZI GCGATG 1 cut(s) 1166
BtrI CACGTC 2 cut(s) 92, 331
BtsCI GGATG 7 cut(s) 114, 261, 508, 945, 1017, 1065, 1123
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 2 cut(s) 398, 850
Cac8I GCNNGC 2 cut(s) 22, 422
CfoI GCGC 6 cut(s) 80, 302, 388, 434, 449, 861
Cfr13I GGNCC 5 cut(s) 35, 220, 237, 250, 325
Cfr9I CCCGGG 1 cut(s) 460
Csp6I GTAC 3 cut(s) 427, 839, 1080
CviAII CATG 4 cut(s) 187, 499, 1090, 1169
CviQI GTAC 3 cut(s) 427, 839, 1080
DdeI CTNAG 4 cut(s) 435, 708, 1083, 1173
DpnI GATC 4 cut(s) 525, 639, 907, 957
DpnII GATC 4 cut(s) 523, 637, 905, 955
Eam1104I CTCTTC 2 cut(s) 917, 1046
EarI CTCTTC 2 cut(s) 917, 1046
EciI GGCGGA 2 cut(s) 284, 1072
Eco130I CCWWGG 1 cut(s) 336
Eco47I GGWCC 3 cut(s) 220, 237, 325
Eco88I CYCGRG 1 cut(s) 460
EcoO109I RGGNCCY 1 cut(s) 220
EcoRI GAATTC 2 cut(s) 661, 691
EcoRII CCWGG 4 cut(s) 15, 26, 240, 1037
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 1123
ErhI CCWWGG 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 1058
FaeI CATG 4 cut(s) 190, 502, 1093, 1172
FaqI GGGAC 4 cut(s) 67, 206, 338, 821
FatI CATG 4 cut(s) 186, 498, 1089, 1168
FauI CCCGC 3 cut(s) 92, 221, 728
Fnu4HI GCNGC 8 cut(s) 71, 298, 315, 348, 351, 374, 389, 397
FokI GGATG 7 cut(s) 101, 248, 515, 952, 1024, 1072, 1130
Fsp4HI GCNGC 8 cut(s) 71, 298, 315, 348, 351, 374, 389, 397
FspBI CTAG 3 cut(s) 641, 666, 753
GlaI GCGC 6 cut(s) 79, 301, 387, 433, 448, 860
GluI GCNGC 8 cut(s) 71, 298, 315, 348, 351, 374, 389, 397
GsuI CTGGAG 1 cut(s) 1088
HaeIII GGCC 4 cut(s) 36, 251, 341, 1088
HapII CCGG 4 cut(s) 47, 217, 461, 521
HhaI GCGC 6 cut(s) 80, 302, 388, 434, 449, 861
Hin1II CATG 4 cut(s) 190, 502, 1093, 1172
Hin6I GCGC 6 cut(s) 78, 300, 386, 432, 447, 859
HinP1I GCGC 6 cut(s) 78, 300, 386, 432, 447, 859
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 5 cut(s) 55, 512, 778, 1097, 1160
HpaII CCGG 4 cut(s) 47, 217, 461, 521
HphI GGTGA 6 cut(s) 97, 196, 557, 586, 617, 698
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 4 cut(s) 517, 528, 660, 709
Hpy188III TCNNGA 2 cut(s) 747, 903
Hpy8I GTNNAC 1 cut(s) 192
Hpy99I CGWCG 3 cut(s) 203, 335, 481
HpyAV CCTTC 3 cut(s) 121, 753, 1141
HpyCH4III ACNGT 2 cut(s) 199, 791
HpyCH4IV ACGT 2 cut(s) 91, 330
HpyCH4V TGCA 3 cut(s) 391, 965, 1121
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 347, 421, 971
HpyF3I CTNAG 4 cut(s) 435, 708, 1083, 1173
HpySE526I ACGT 2 cut(s) 91, 330
Hsp92II CATG 4 cut(s) 190, 502, 1093, 1172
HspAI GCGC 6 cut(s) 78, 300, 386, 432, 447, 859
KflI GGGWCCC 1 cut(s) 220
KpnI GGTACC 1 cut(s) 430
Kzo9I GATC 4 cut(s) 523, 637, 905, 955
LmnI GCTCC 1 cut(s) 1069
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 1 cut(s) 1108
MaeI CTAG 3 cut(s) 641, 666, 753
MaeII ACGT 2 cut(s) 91, 330
MaeIII GTNAC 1 cut(s) 202
MalI GATC 4 cut(s) 525, 639, 907, 957
MboI GATC 4 cut(s) 523, 637, 905, 955
MboII GAAGA 9 cut(s) 391, 463, 931, 934, 1036, 1063, 1147, 1150, 1155
MflI RGATCY 2 cut(s) 905, 955
MluCI AATT 6 cut(s) 568, 618, 650, 661, 691, 816
MlyI GAGTC 3 cut(s) 49, 521, 1169
MmeI TCCRAC 4 cut(s) 203, 477, 540, 1107
Mph1103I ATGCAT 1 cut(s) 1123
MseI TTAA 5 cut(s) 672, 726, 783, 795, 1074
MspA1I CMGCKG 1 cut(s) 282
MspCI CTTAAG 1 cut(s) 1073
MspI CCGG 4 cut(s) 47, 217, 461, 521
MspR9I CCNGG 9 cut(s) 17, 28, 48, 218, 242, 461, 462, 521, 1039
MvaI CCWGG 4 cut(s) 17, 28, 242, 1039
MvnI CGCG 6 cut(s) 78, 276, 300, 386, 432, 447
MwoI GCNNNNNNNGC 4 cut(s) 84, 347, 421, 971
NciI CCSGG 5 cut(s) 48, 218, 461, 462, 521
NdeII GATC 4 cut(s) 523, 637, 905, 955
NlaIII CATG 4 cut(s) 190, 502, 1093, 1172
NlaIV GGNNCC 7 cut(s) 221, 222, 239, 326, 428, 907, 957
NmuCI GTSAC 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 1123
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PfeI GAWTC 2 cut(s) 778, 1097
PflFI GACNNNGTC 1 cut(s) 329
PflMI CCANNNNNTGG 1 cut(s) 406
PkrI GCNGC 8 cut(s) 72, 299, 316, 349, 352, 375, 390, 398
PleI GAGTC 3 cut(s) 49, 520, 1168
PpsI GAGTC 3 cut(s) 49, 520, 1168
PpuMI RGGWCCY 1 cut(s) 220
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 4 cut(s) 15, 26, 240, 1037
PspGI CCWGG 4 cut(s) 15, 26, 240, 1037
PspN4I GGNNCC 7 cut(s) 221, 222, 239, 326, 428, 907, 957
PspPI GGNCC 5 cut(s) 35, 220, 237, 250, 325
PspPPI RGGWCCY 1 cut(s) 220
PstI CTGCAG 1 cut(s) 393
PsuI RGATCY 2 cut(s) 905, 955
PsyI GACNNNGTC 1 cut(s) 329
RsaI GTAC 3 cut(s) 428, 840, 1081
RsaNI GTAC 3 cut(s) 427, 839, 1080
SaqAI TTAA 5 cut(s) 672, 726, 783, 795, 1074
SatI GCNGC 8 cut(s) 71, 298, 315, 348, 351, 374, 389, 397
Sau3AI GATC 4 cut(s) 523, 637, 905, 955
Sau96I GGNCC 5 cut(s) 35, 220, 237, 250, 325
SchI GAGTC 3 cut(s) 49, 521, 1169
ScrFI CCNGG 9 cut(s) 17, 28, 48, 218, 242, 461, 462, 521, 1039
SetI ASST 9 cut(s) 94, 105, 176, 333, 417, 559, 671, 1040, 1074
SfaNI GCATC 1 cut(s) 1108
SfcI CTRYAG 2 cut(s) 389, 676
SinI GGWCC 3 cut(s) 220, 237, 325
SmaI CCCGGG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 1073
SmoI CTYRAG 1 cut(s) 1073
Sse9I AATT 6 cut(s) 568, 618, 650, 661, 691, 816
SspMI CTAG 3 cut(s) 641, 666, 753
StyD4I CCNGG 9 cut(s) 15, 26, 46, 216, 240, 459, 460, 519, 1037
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 2 cut(s) 199, 791
TaiI ACGT 2 cut(s) 94, 333
TaqI TCGA 3 cut(s) 730, 746, 980
TasI AATT 6 cut(s) 568, 618, 650, 661, 691, 816
TauI GCSGC 7 cut(s) 73, 300, 317, 350, 353, 376, 399
TfiI GAWTC 2 cut(s) 778, 1097
Tru1I TTAA 5 cut(s) 672, 726, 783, 795, 1074
Tru9I TTAA 5 cut(s) 672, 726, 783, 795, 1074
TscAI CASTG 2 cut(s) 398, 850
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 5 cut(s) 103, 482, 663, 1037, 1106
TspGWI ACGGA 1 cut(s) 1082
TspMI CCCGGG 1 cut(s) 460
TspRI CASTG 2 cut(s) 398, 850
Tth111I GACNNNGTC 1 cut(s) 329
Van91I CCANNNNNTGG 1 cut(s) 406
Vha464I CTTAAG 1 cut(s) 1073
VpaK11BI GGWCC 3 cut(s) 220, 237, 325
XapI RAATTY 2 cut(s) 661, 691
XcmI CCANNNNNNNNNTGG 1 cut(s) 231
XmaI CCCGGG 1 cut(s) 460
XspI CTAG 3 cut(s) 641, 666, 753
Zsp2I ATGCAT 1 cut(s) 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.