Rroxscaffold_3G00252100
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001209
Physical Location & Seq
Forward (+)
46145760 .. 46147181
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00252100.1

Sequence Viewer

Length: 1206 bp
ATGCAACGATACTCGACGACGATTGGACGAAAGTTTGCGTGGCCCCTATCGTGGCGGACTCCTTGTGCGACCTTTTCACCCGCCGCCCAACTGCGCCACCCCGCGCACGTTAGCATTACCTCACCGCCTTCACCCACCCCACCAACCCCACAATATGCCACCCACCAAATCTCTCCCCGCAACCAAAACAACCCCCTCTCCTCTCCTTCACCGCAACCCAACCATGTCCACCGTCGTCACCACCGCCCTACCCACCAAACCCCGCCGGGTCCCACCCCCTGCTGGACCCAGGACGAGGCCCGCTCCCTCATCCTCGCCTACCGCGACCGCTGGTTCGCTCTCCGCCGCACCAATCTCAAATCCGCCGACTGGGACCACGTCGCCGCCGCCACCGCCGCCGCGGCTCCCTCCTCCCCGCCCAAGACCGCGCTGCAGTGCCGGCATAAGATGGAGAAGCTCCGCAAGCGGTACCGCGCTGAGAAGCAGCGCGCTTCCGGGTACCCGGGTCGGTTTTCCTCGTCGTGGGCTCTGTTTCATCTCATGGATGAAATGGAGTCCGGCCCGGATCGGGGATTGGATAGTGGTGGTGAGTTTGGAGGTGGGTTTTCGTTAAAGGCTCGTAATTTGGTGAAATTTGATGGAAATGTTGGTAGGGATTTTAGTCCTGATGTTGATGAGAATCCTAGCTTTTATTCTGAAGGTGATGATTATGTTAATCAAGGGTTTAGGCCAAAGAGTAATGGCAAGACTGATGTGAATCTTAAGCACAGTTTCAGGAAACATGGGGACTATGGAGTTGATATTAGAAGTGATAGGGATTTTGTACCTGCCGGTTTTCGGCCAAAGAGTAGTGGCATTGTTGATGGGAATGTAAAGCGCAATGTGCGTTTTAAGGAGTTTGATGGGTATTCTTGTTTATCAGGATCAAAGTTTGTTGAGAAGAGTAGTGTTGTTGGGAGTAAGAGAGATGTGGATCCTGTTGAAGACTTGGCTTCATCAATTATGCGGTTGGGAGAAGGGTTTGTGAGGATGGAGAAAATGAAGATGGAAATGACCATGGAGATTGAGAAGATGCGAATGGAGATGGAGCTGAAGCGTAATGAGGCCATGATCGAATCCCACCAGCAGATTGTGGATGCTTTTGTGAATGCATTATTGGAAAGGAAGAGGAAAAAGAAGGCGAAGGTGGAGTCTTCCCATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

401

Amino Acids

45.34

Weight (kDa)

9.75

Isoelectric Point (pI)

50.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 93 - 184 2.2e-16 Myb/SANT-like DNA-binding domain
MADF_DNA_bdg PF10545 115 - 181 4.2e-06 Alcohol dehydrogenase transcription factor Myb/SANT-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 835
Acc65I GGTACC 2 cut(s) 468, 498
AccB1I GGYRCC 2 cut(s) 468, 498
AccBSI CCGCTC 1 cut(s) 303
AccII CGCG 6 cut(s) 104, 324, 401, 428, 474, 489
AclWI GGATC 4 cut(s) 573, 931, 968, 981
AcoI YGGCCR 1 cut(s) 839
AcsI RAATTY 1 cut(s) 632
AcuI CTGAAG 2 cut(s) 717, 1112
AfaI GTAC 3 cut(s) 470, 500, 825
AfiI CCNNNNNNNGG 8 cut(s) 51, 282, 295, 369, 522, 568, 569, 837
AflII CTTAAG 1 cut(s) 761
AgsI TTSAA 1 cut(s) 983
AjiI CACGTC 1 cut(s) 379
AjnI CCWGG 1 cut(s) 288
AjuI GAANNNNNNNTTGG 2 cut(s) 1139, 1171
AluBI AGCT 3 cut(s) 457, 687, 1090
AluI AGCT 3 cut(s) 457, 687, 1090
AlwI GGATC 4 cut(s) 573, 931, 968, 981
Ama87I CYCGRG 1 cut(s) 502
AoxI GGCC 6 cut(s) 41, 297, 559, 728, 839, 1104
ApeKI GCWGC 2 cut(s) 430, 484
ApoI RAATTY 1 cut(s) 632
ArsI GACNNNNNNTTYG 3 cut(s) 317, 349, 1175
Asp718I GGTACC 2 cut(s) 468, 498
AspLEI GCGC 7 cut(s) 96, 106, 430, 476, 489, 491, 879
AspS9I GGNCC 6 cut(s) 42, 269, 285, 298, 373, 560
AsuC2I CCSGG 5 cut(s) 267, 496, 503, 504, 563
AsuHPI GGTGA 8 cut(s) 69, 114, 123, 201, 230, 599, 640, 713
AvaI CYCGRG 1 cut(s) 502
AvaII GGWCC 3 cut(s) 269, 285, 373
BaeI ACNNNNGTAYC 2 cut(s) 490, 523
BamHI GGATCC 1 cut(s) 973
BanI GGYRCC 2 cut(s) 468, 498
BanII GRGCYC 1 cut(s) 529
BbsI GAAGAC 2 cut(s) 990, 1185
BbvI GCAGC 2 cut(s) 417, 496
BccI CCATC 7 cut(s) 442, 632, 857, 896, 1024, 1039, 1078
BciT130I CCWGG 1 cut(s) 290
BcnI CCSGG 5 cut(s) 267, 496, 503, 504, 563
BfaI CTAG 1 cut(s) 684
BfmI CTRYAG 1 cut(s) 431
BfrI CTTAAG 1 cut(s) 761
BfuAI ACCTGC 1 cut(s) 835
BglI GCCNNNNNGGC 1 cut(s) 401
BisI GCNGC 9 cut(s) 84, 346, 384, 387, 396, 399, 402, 431, 485
BlsI GCNGC 9 cut(s) 85, 347, 385, 388, 397, 400, 403, 432, 486
Bme1390I CCNGG 6 cut(s) 267, 290, 496, 503, 504, 563
Bme18I GGWCC 3 cut(s) 269, 285, 373
BmeT110I CYCGRG 1 cut(s) 502
BmgBI CACGTC 1 cut(s) 379
BmgT120I GGNCC 6 cut(s) 42, 269, 285, 298, 373, 560
BmiI GGNNCC 9 cut(s) 44, 270, 271, 287, 374, 405, 470, 500, 975
BmrFI CCNGG 6 cut(s) 267, 290, 496, 503, 504, 563
BmrI ACTGGG 1 cut(s) 379
BmsI GCATC 2 cut(s) 1062, 1126
BmuI ACTGGG 1 cut(s) 379
BpiI GAAGAC 2 cut(s) 990, 1185
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpuMI CCSGG 5 cut(s) 267, 496, 503, 504, 563
BsaBI GATNNNNATC 3 cut(s) 678, 756, 972
BsaJI CCNNGG 4 cut(s) 288, 399, 502, 1056
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 8 cut(s) 51, 282, 295, 369, 522, 568, 569, 837
Bse118I RCCGGY 2 cut(s) 438, 830
Bse1I ACTGG 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 886
Bse8I GATNNNNATC 3 cut(s) 678, 756, 972
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 4 cut(s) 288, 399, 502, 1056
BseGI GGATG 4 cut(s) 309, 550, 1035, 1141
BseJI GATNNNNATC 3 cut(s) 678, 756, 972
BseLI CCNNNNNNNGG 8 cut(s) 51, 282, 295, 369, 522, 568, 569, 837
BseMI GCAATG 1 cut(s) 886
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 374
BsePI GCGCGC 1 cut(s) 487
BseRI GAGGAG 2 cut(s) 190, 400
BseXI GCAGC 2 cut(s) 417, 496
Bsh1236I CGCG 6 cut(s) 104, 324, 401, 428, 474, 489
Bsh1285I CGRYCG 1 cut(s) 328
BshFI GGCC 6 cut(s) 43, 299, 561, 730, 841, 1106
BshNI GGYRCC 2 cut(s) 468, 498
BsiEI CGRYCG 1 cut(s) 328
BsiHKCI CYCGRG 1 cut(s) 502
BsiSI CCGG 7 cut(s) 266, 439, 495, 503, 558, 563, 831
BslFI GGGAC 3 cut(s) 255, 386, 800
BslI CCNNNNNNNGG 8 cut(s) 51, 282, 295, 369, 522, 568, 569, 837
BsmFI GGGAC 3 cut(s) 255, 386, 800
BsmI GAATGC 1 cut(s) 1153
BsnI GGCC 6 cut(s) 43, 299, 561, 730, 841, 1106
BsoBI CYCGRG 1 cut(s) 502
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 4 cut(s) 565, 923, 973, 1110
Bsp19I CCATGG 1 cut(s) 1056
BspANI GGCC 6 cut(s) 43, 299, 561, 730, 841, 1106
BspCNI CTCAG 1 cut(s) 469
BspFNI CGCG 6 cut(s) 104, 324, 401, 428, 474, 489
BspLI GGNNCC 9 cut(s) 44, 270, 271, 287, 374, 405, 470, 500, 975
BspMAI CTGCAG 1 cut(s) 435
BspMI ACCTGC 1 cut(s) 835
BspPI GGATC 4 cut(s) 573, 931, 968, 981
BspT107I GGYRCC 2 cut(s) 468, 498
BspTI CTTAAG 1 cut(s) 761
BsrBI CCGCTC 1 cut(s) 303
BsrDI GCAATG 1 cut(s) 886
BsrFI RCCGGY 2 cut(s) 438, 830
BsrI ACTGG 1 cut(s) 374
BssAI RCCGGY 2 cut(s) 438, 830
BssECI CCNNGG 4 cut(s) 288, 399, 502, 1056
BssHII GCGCGC 1 cut(s) 487
BssMI GATC 4 cut(s) 565, 923, 973, 1110
BssT1I CCWWGG 1 cut(s) 1056
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 2 cut(s) 233, 770
Bst6I CTCTTC 2 cut(s) 935, 1160
BstAFI CTTAAG 1 cut(s) 761
BstC8I GCNNGC 4 cut(s) 301, 440, 464, 489
BstDEI CTNAG 2 cut(s) 477, 1203
BstDSI CCRYGG 2 cut(s) 399, 1056
BstF5I GGATG 4 cut(s) 309, 550, 1035, 1141
BstFNI CGCG 6 cut(s) 104, 324, 401, 428, 474, 489
BstHHI GCGC 7 cut(s) 96, 106, 430, 476, 489, 491, 879
BstKTI GATC 4 cut(s) 568, 926, 976, 1113
BstMBI GATC 4 cut(s) 565, 923, 973, 1110
BstMCI CGRYCG 1 cut(s) 328
BstMWI GCNNNNNNNGC 6 cut(s) 392, 395, 401, 439, 463, 883
BstNI CCWGG 1 cut(s) 290
BstSCI CCNGG 6 cut(s) 265, 288, 494, 501, 502, 561
BstSFI CTRYAG 1 cut(s) 431
BstUI CGCG 6 cut(s) 104, 324, 401, 428, 474, 489
BstV1I GCAGC 2 cut(s) 417, 496
BstV2I GAAGAC 2 cut(s) 990, 1185
BstX2I RGATCY 1 cut(s) 973
BstYI RGATCY 1 cut(s) 973
BsuRI GGCC 6 cut(s) 43, 299, 561, 730, 841, 1106
BtgI CCRYGG 2 cut(s) 399, 1056
BtrI CACGTC 1 cut(s) 379
BtsCI GGATG 4 cut(s) 309, 550, 1035, 1141
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 1 cut(s) 440
BveI ACCTGC 1 cut(s) 835
Cac8I GCNNGC 4 cut(s) 301, 440, 464, 489
CfoI GCGC 7 cut(s) 96, 106, 430, 476, 489, 491, 879
Cfr10I RCCGGY 2 cut(s) 438, 830
Cfr13I GGNCC 6 cut(s) 42, 269, 285, 298, 373, 560
Cfr42I CCGCGG 1 cut(s) 402
Cfr9I CCCGGG 1 cut(s) 502
Csp6I GTAC 3 cut(s) 469, 499, 824
CviAII CATG 6 cut(s) 224, 541, 782, 1057, 1108, 1199
CviQI GTAC 3 cut(s) 469, 499, 824
DdeI CTNAG 2 cut(s) 477, 1203
DpnI GATC 4 cut(s) 567, 925, 975, 1112
DpnII GATC 4 cut(s) 565, 923, 973, 1110
EaeI YGGCCR 1 cut(s) 839
Eam1104I CTCTTC 2 cut(s) 935, 1160
EarI CTCTTC 2 cut(s) 935, 1160
EciI GGCGGA 3 cut(s) 70, 332, 352
Eco130I CCWWGG 1 cut(s) 1056
Eco24I GRGCYC 1 cut(s) 529
Eco47I GGWCC 3 cut(s) 269, 285, 373
Eco57I CTGAAG 2 cut(s) 717, 1112
Eco88I CYCGRG 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 1056
EcoT22I ATGCAT 1 cut(s) 1153
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 1 cut(s) 1056
FaeI CATG 6 cut(s) 227, 544, 785, 1060, 1111, 1202
FaqI GGGAC 3 cut(s) 255, 386, 800
FatI CATG 6 cut(s) 223, 540, 781, 1056, 1107, 1198
FauI CCCGC 6 cut(s) 88, 109, 185, 270, 308, 423
Fnu4HI GCNGC 9 cut(s) 84, 346, 384, 387, 396, 399, 402, 431, 485
FokI GGATG 4 cut(s) 296, 557, 1042, 1148
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 9 cut(s) 84, 346, 384, 387, 396, 399, 402, 431, 485
FspBI CTAG 1 cut(s) 684
GlaI GCGC 7 cut(s) 95, 105, 429, 475, 488, 490, 878
GluI GCNGC 9 cut(s) 84, 346, 384, 387, 396, 399, 402, 431, 485
HaeIII GGCC 6 cut(s) 43, 299, 561, 730, 841, 1106
HapII CCGG 7 cut(s) 266, 439, 495, 503, 558, 563, 831
HhaI GCGC 7 cut(s) 96, 106, 430, 476, 489, 491, 879
Hin1II CATG 6 cut(s) 227, 544, 785, 1060, 1111, 1202
Hin6I GCGC 7 cut(s) 94, 104, 428, 474, 487, 489, 877
HinP1I GCGC 7 cut(s) 94, 104, 428, 474, 487, 489, 877
HinfI GANTC 6 cut(s) 58, 554, 679, 757, 1115, 1190
HpaII CCGG 7 cut(s) 266, 439, 495, 503, 558, 563, 831
HphI GGTGA 8 cut(s) 69, 114, 123, 201, 230, 599, 640, 713
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 697
Hpy188III TCNNGA 3 cut(s) 665, 775, 921
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 5 cut(s) 19, 22, 237, 383, 523
HpyAV CCTTC 6 cut(s) 138, 216, 692, 1010, 1171, 1177
HpyCH4III ACNGT 2 cut(s) 233, 770
HpyCH4IV ACGT 2 cut(s) 108, 378
HpyCH4V TGCA 3 cut(s) 4, 433, 1151
HpyF10VI GCNNNNNNNGC 6 cut(s) 392, 395, 401, 439, 463, 883
HpyF3I CTNAG 2 cut(s) 477, 1203
HpySE526I ACGT 2 cut(s) 108, 378
Hsp92II CATG 6 cut(s) 227, 544, 785, 1060, 1111, 1202
HspAI GCGC 7 cut(s) 94, 104, 428, 474, 487, 489, 877
KflI GGGWCCC 1 cut(s) 269
KpnI GGTACC 2 cut(s) 472, 502
KroI GCCGGC 1 cut(s) 438
KroNI GCCGGC 1 cut(s) 440
KspI CCGCGG 1 cut(s) 402
Kzo9I GATC 4 cut(s) 565, 923, 973, 1110
LmnI GCTCC 4 cut(s) 308, 409, 462, 1087
Lsp1109I GCAGC 2 cut(s) 417, 496
LweI GCATC 2 cut(s) 1062, 1126
MaeI CTAG 1 cut(s) 684
MaeII ACGT 2 cut(s) 108, 378
MaeIII GTNAC 1 cut(s) 236
MalI GATC 4 cut(s) 567, 925, 975, 1112
MbiI CCGCTC 1 cut(s) 303
MboI GATC 4 cut(s) 565, 923, 973, 1110
MboII GAAGA 6 cut(s) 952, 995, 1054, 1081, 1177, 1185
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 1 cut(s) 529
MluCI AATT 3 cut(s) 622, 632, 999
MlyI GAGTC 3 cut(s) 52, 563, 1199
Mph1103I ATGCAT 1 cut(s) 1153
MroNI GCCGGC 1 cut(s) 438
MseI TTAA 4 cut(s) 611, 714, 762, 891
MspA1I CMGCKG 2 cut(s) 330, 401
MspCI CTTAAG 1 cut(s) 761
MspI CCGG 7 cut(s) 266, 439, 495, 503, 558, 563, 831
MspR9I CCNGG 6 cut(s) 267, 290, 496, 503, 504, 563
Mva1269I GAATGC 1 cut(s) 1153
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 6 cut(s) 104, 324, 401, 428, 474, 489
MwoI GCNNNNNNNGC 6 cut(s) 392, 395, 401, 439, 463, 883
NaeI GCCGGC 1 cut(s) 440
NciI CCSGG 5 cut(s) 267, 496, 503, 504, 563
NcoI CCATGG 1 cut(s) 1056
NdeII GATC 4 cut(s) 565, 923, 973, 1110
NgoMIV GCCGGC 1 cut(s) 438
NlaIII CATG 6 cut(s) 227, 544, 785, 1060, 1111, 1202
NlaIV GGNNCC 9 cut(s) 44, 270, 271, 287, 374, 405, 470, 500, 975
NmuCI GTSAC 1 cut(s) 236
NsiI ATGCAT 1 cut(s) 1153
PauI GCGCGC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PctI GAATGC 1 cut(s) 1153
PdiI GCCGGC 1 cut(s) 440
PfeI GAWTC 3 cut(s) 679, 757, 1115
PflFI GACNNNGTC 1 cut(s) 377
PkrI GCNGC 9 cut(s) 85, 347, 385, 388, 397, 400, 403, 432, 486
PleI GAGTC 3 cut(s) 52, 562, 1198
PpsI GAGTC 3 cut(s) 52, 562, 1198
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 9 cut(s) 44, 270, 271, 287, 374, 405, 470, 500, 975
PspPI GGNCC 6 cut(s) 42, 269, 285, 298, 373, 560
PspPPI RGGWCCY 1 cut(s) 269
PstI CTGCAG 1 cut(s) 435
PsuI RGATCY 1 cut(s) 973
PsyI GACNNNGTC 1 cut(s) 377
PteI GCGCGC 1 cut(s) 487
RsaI GTAC 3 cut(s) 470, 500, 825
RsaNI GTAC 3 cut(s) 469, 499, 824
SacII CCGCGG 1 cut(s) 402
SaqAI TTAA 4 cut(s) 611, 714, 762, 891
SatI GCNGC 9 cut(s) 84, 346, 384, 387, 396, 399, 402, 431, 485
Sau3AI GATC 4 cut(s) 565, 923, 973, 1110
Sau96I GGNCC 6 cut(s) 42, 269, 285, 298, 373, 560
SchI GAGTC 3 cut(s) 52, 563, 1199
ScrFI CCNGG 6 cut(s) 267, 290, 496, 503, 504, 563
SduI GDGCHC 1 cut(s) 529
SfaNI GCATC 2 cut(s) 1062, 1126
SfcI CTRYAG 1 cut(s) 431
Sfr303I CCGCGG 1 cut(s) 402
SgrBI CCGCGG 1 cut(s) 402
SinI GGWCC 3 cut(s) 269, 285, 373
SmaI CCCGGG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 3 cut(s) 622, 632, 999
SspMI CTAG 1 cut(s) 684
StyD4I CCNGG 6 cut(s) 265, 288, 494, 501, 502, 561
StyI CCWWGG 1 cut(s) 1056
TaaI ACNGT 2 cut(s) 233, 770
TaiI ACGT 2 cut(s) 111, 381
TaqI TCGA 2 cut(s) 14, 1113
TasI AATT 3 cut(s) 622, 632, 999
TauI GCSGC 7 cut(s) 86, 348, 386, 389, 398, 401, 404
TfiI GAWTC 3 cut(s) 679, 757, 1115
Tru1I TTAA 4 cut(s) 611, 714, 762, 891
Tru9I TTAA 4 cut(s) 611, 714, 762, 891
TscAI CASTG 1 cut(s) 440
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 2 cut(s) 430, 484
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 4 cut(s) 524, 561, 984, 1055
TspMI CCCGGG 1 cut(s) 502
TspRI CASTG 1 cut(s) 440
Tth111I GACNNNGTC 1 cut(s) 377
Vha464I CTTAAG 1 cut(s) 761
VpaK11BI GGWCC 3 cut(s) 269, 285, 373
XapI RAATTY 1 cut(s) 632
XmaI CCCGGG 1 cut(s) 502
XspI CTAG 1 cut(s) 684
Zsp2I ATGCAT 1 cut(s) 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.