Rorug03G0271600
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001209
Physical Location & Seq
Reverse (-)
26785100 .. 26787204
2105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0271600.1

Sequence Viewer

Length: 267 bp
ATGGCGCAACCTGAGAATCCTGTCGTCCTGGACCAGACGTTGAAGCCTTTTTACCAGAGAGCCTCCGAAGCCGAGGACCGCTTAACAAGACTTGAAGCTGCCCTTGCTAGTAAGAAAGATTCTGGAAATAAGGATGATTCAAAGTTGATCAGTGAACTCCAAGAAGAGAACAAGAAGCTCGCTGCAGAGAATGCAAAGCTCCAGTACCGCATACACCACCTTGTTCAGGCAGTCAGAGATGTTGATGTCAAGTTAGAGAAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

88

Amino Acids

10.04

Weight (kDa)

6.74

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 79, 208
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 3 cut(s) 43, 95, 141
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 3 cut(s) 98, 178, 199
AluI AGCT 3 cut(s) 98, 178, 199
ApeKI GCWGC 2 cut(s) 98, 182
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 31, 76
AvaII GGWCC 2 cut(s) 31, 76
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
BbvI GCAGC 2 cut(s) 85, 169
BciT130I CCWGG 1 cut(s) 29
BclI TGATCA 1 cut(s) 147
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 2 cut(s) 99, 183
BlsI GCNGC 2 cut(s) 100, 184
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 2 cut(s) 31, 76
BmgT120I GGNCC 2 cut(s) 31, 76
BmrFI CCNGG 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 226
BseNI ACTGG 1 cut(s) 202
BseXI GCAGC 2 cut(s) 85, 169
BslI CCNNNNNNNGG 1 cut(s) 226
BsmI GAATGC 1 cut(s) 196
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 2 cut(s) 79, 208
BspCNI CTCAG 1 cut(s) 4
BspMAI CTGCAG 1 cut(s) 187
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 139
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 3 cut(s) 68, 104, 191
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 85, 169
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 31, 76
Csp6I GTAC 1 cut(s) 205
CviJI RGCY 6 cut(s) 46, 62, 71, 98, 178, 199
CviKI_1 RGCY 6 cut(s) 46, 62, 71, 98, 178, 199
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco47I GGWCC 2 cut(s) 31, 76
EcoNI CCTNNNNNAGG 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 27
FaiI YATR 1 cut(s) 212
FalI AAGNNNNNCTT 2 cut(s) 87, 119
FbaI TGATCA 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 99, 183
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 99, 183
FspBI CTAG 1 cut(s) 108
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 99, 183
GsuI CTGGAG 1 cut(s) 185
HhaI GCGC 1 cut(s) 7
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 3 cut(s) 16, 119, 137
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 2 cut(s) 67, 236
Hpy188III TCNNGA 1 cut(s) 123
Hpy8I GTNNAC 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 2 cut(s) 185, 194
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 104, 191
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 38
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 9 cut(s) 14, 24, 33, 41, 47, 68, 108, 212, 215
Lsp1109I GCAGC 2 cut(s) 85, 169
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 38
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 1 cut(s) 176
MnlI CCTC 2 cut(s) 67, 73
MseI TTAA 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 68, 104, 191
NdeII GATC 1 cut(s) 147
NmeAIII GCCGAG 1 cut(s) 97
PctI GAATGC 1 cut(s) 196
PfeI GAWTC 3 cut(s) 16, 119, 137
PfoI TCCNGGA 1 cut(s) 27
PkrI GCNGC 2 cut(s) 100, 184
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspPI GGNCC 2 cut(s) 31, 76
PstI CTGCAG 1 cut(s) 187
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 2 cut(s) 99, 183
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 2 cut(s) 31, 76
ScrFI CCNGG 1 cut(s) 29
SetI ASST 6 cut(s) 13, 41, 100, 180, 201, 222
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 2 cut(s) 31, 76
SsiI CCGC 2 cut(s) 79, 208
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 27
TaiI ACGT 1 cut(s) 41
TfiI GAWTC 3 cut(s) 16, 119, 137
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 1 cut(s) 157
TseI GCWGC 2 cut(s) 98, 182
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 2 cut(s) 31, 76
XagI CCTNNNNNAGG 1 cut(s) 224
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.