Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0005655

Physical Location & Seq

Genomic Coordinates Reverse (-)

6409002 .. 6412974

Gene Structure 3973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1047100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGTCGACTCGGGTTTGGACTCGAAGCATTTGTATTGGAAGGTCACCAATCCCACACTTTCTCCTTCCCATCTTCAAGGTTGGACCATGACATTGGGAACCTATTTGATAACGCCGGTGATGGGTTCACACTTTGTAATAGGTTCCCACAAATTAACGGTGGACTCATATGCTTATCTACCTTCTAATGTTGATCAGTCCCTCAGGTGTGATGCATCTGCCGCTCTTGTGGTATTCAAGAGAAGGCATGTTTCTCTGGAAAATCAATCTACTGAGCTGATTTTTGGTTCAACAGATGAGCAGCCACTCCTGGAAACTCCAGGTGAGGTCTTCCAACTAAGGAAGCTTATTCCAGCATCTATATCCTATGACTTCAATATCCATATTATGGACTTTCAGCCTGGGGAGTATCTTAATGTGAAGGAGGTCCATGACAATCAGCATGGTTTGTTGCTTCTGGAGGGGCAGGATATTTACCGTTTGGGTGATAGCTGGTATGCGGCATTAGGTGAATGCCGGACGCGATATTTGCTGTACAAAGATGTAAATAGGAATCCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003700 GO:0003824 GO:0006139 GO:0006144 GO:0006145 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009889 GO:0009987 GO:0010135 GO:0010136 GO:0010468 GO:0010556 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031326 GO:0034641 GO:0042737 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0046113 GO:0046483 GO:0046700 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055086 GO:0060255 GO:0065007 GO:0071522 GO:0071704 GO:0072521 GO:0072523 GO:0080090 GO:0140110 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

Cupin_2

Protein Analysis

188

Amino Acids

21.24

Weight (kDa)

5.69

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17050
fragaria_vesca	FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400
malus_domestica	MD04G1055500.v1.1 MD06G1047100.v1.1
prunus_persica	Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1
pyrus_communis	pycom04g04880
rosa_chinensis	RchiOBHm_Chr7g0205681
rosa_laevigata	RLG00000003365
rosa_multiflora	Rmu_sc0000233.1_g000001 Rmu_sc0006124.1_g000008
rosa_roxburghii	Rroxscaffold_3G00252080
rosa_rugosa	Rorug07G0092400 Rorug07G0092400
rosa_samantha	Rh5AG401700 Rh7AG223500 Rh7BG218500 Rh7CG236800 Rh7DG230600
rosa_wichuraiana	Rw5G010210 Rw7G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	388
AccBSI	CCGCTC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	6
AccII	CGCG	1 cut(s)	523
AciI	CCGC	2 cut(s)	222, 500
AfaI	GTAC	1 cut(s)	536
AfiI	CCNNNNNNNGG	2 cut(s)	122, 388
AgsI	TTSAA	4 cut(s)	77, 238, 291, 376
AjnI	CCWGG	3 cut(s)	309, 319, 400
AluBI	AGCT	3 cut(s)	277, 346, 492
AluI	AGCT	3 cut(s)	277, 346, 492
Ama87I	CYCGRG	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	301
ArsI	GACNNNNNNTTYG	2 cut(s)	511, 543
AspS9I	GGNCC	2 cut(s)	84, 427
AsuHPI	GGTGA	5 cut(s)	37, 130, 335, 497, 521
AvaI	CYCGRG	1 cut(s)	10
AvaII	GGWCC	2 cut(s)	84, 427
AxyI	CCTNAGG	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	313
BccI	CCATC	2 cut(s)	78, 115
BciT130I	CCWGG	3 cut(s)	311, 321, 402
BclI	TGATCA	1 cut(s)	193
BfaI	CTAG	1 cut(s)	562
BisI	GCNGC	3 cut(s)	222, 302, 501
BlsI	GCNGC	3 cut(s)	223, 303, 502
Bme1390I	CCNGG	3 cut(s)	311, 321, 402
Bme18I	GGWCC	2 cut(s)	84, 427
BmeT110I	CYCGRG	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	84, 427
BmiI	GGNNCC	2 cut(s)	100, 145
BmrFI	CCNGG	3 cut(s)	311, 321, 402
BmsI	GCATC	3 cut(s)	202, 224, 365
BpiI	GAAGAC	1 cut(s)	322
BpmI	CTGGAG	2 cut(s)	303, 479
BsaJI	CCNNGG	1 cut(s)	401
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 388
Bse118I	RCCGGY	1 cut(s)	115
Bse21I	CCTNAGG	1 cut(s)	203
BseBI	CCWGG	3 cut(s)	311, 321, 402
BseDI	CCNNGG	1 cut(s)	401
BseLI	CCNNNNNNNGG	2 cut(s)	122, 388
BseMII	CTCAG	2 cut(s)	217, 264
BseXI	GCAGC	1 cut(s)	313
Bsh1236I	CGCG	1 cut(s)	523
BsiHKCI	CYCGRG	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	116, 517
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	122, 388
BsmFI	GGGAC	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	518
BsoBI	CYCGRG	1 cut(s)	10
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	2 cut(s)	222, 500
BspCNI	CTCAG	2 cut(s)	216, 265
BspFNI	CGCG	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	100, 145
BsrBI	CCGCTC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	115
BsrGI	TGTACA	1 cut(s)	534
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	401
BssMI	GATC	1 cut(s)	193
Bst2UI	CCWGG	3 cut(s)	311, 321, 402
Bst4CI	ACNGT	2 cut(s)	160, 479
BstAUI	TGTACA	1 cut(s)	534
BstDEI	CTNAG	3 cut(s)	203, 273, 338
BstEII	GGTNACC	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	523
BstKTI	GATC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 529
BstNI	CCWGG	3 cut(s)	311, 321, 402
BstNSI	RCATGY	1 cut(s)	251
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	3 cut(s)	309, 319, 400
BstUI	CGCG	1 cut(s)	523
BstV1I	GCAGC	1 cut(s)	313
BstV2I	GAAGAC	1 cut(s)	322
BstXI	CCANNNNNNTGG	1 cut(s)	94
Bsu36I	CCTNAGG	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	2 cut(s)	84, 427
CseI	GACGC	1 cut(s)	529
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	4 cut(s)	88, 248, 431, 443
CviJI	RGCY	5 cut(s)	277, 304, 346, 400, 492
CviKI_1	RGCY	5 cut(s)	277, 304, 346, 400, 492
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	3 cut(s)	203, 273, 338
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	84, 427
Eco81I	CCTNAGG	1 cut(s)	203
Eco88I	CYCGRG	1 cut(s)	10
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	309, 319, 400
EcoT22I	ATGCAT	1 cut(s)	217
FaeI	CATG	4 cut(s)	91, 251, 434, 446
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	4 cut(s)	87, 247, 430, 442
FauNDI	CATATG	1 cut(s)	169
FbaI	TGATCA	1 cut(s)	193
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	222, 302, 501
Fsp4HI	GCNGC	3 cut(s)	222, 302, 501
FspBI	CTAG	1 cut(s)	562
GluI	GCNGC	3 cut(s)	222, 302, 501
GsuI	CTGGAG	2 cut(s)	303, 479
HapII	CCGG	2 cut(s)	116, 517
HgaI	GACGC	1 cut(s)	529
Hin1II	CATG	4 cut(s)	91, 251, 434, 446
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	4 cut(s)	8, 20, 164, 553
HpaII	CCGG	2 cut(s)	116, 517
HphI	GGTGA	5 cut(s)	37, 130, 335, 497, 521
Hpy166II	GTNNAC	3 cut(s)	7, 128, 163
Hpy188III	TCNNGA	3 cut(s)	238, 257, 458
Hpy8I	GTNNAC	3 cut(s)	7, 128, 163
HpyAV	CCTTC	5 cut(s)	34, 75, 192, 237, 415
HpyCH4III	ACNGT	2 cut(s)	160, 479
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 529
HpyF3I	CTNAG	3 cut(s)	203, 273, 338
Hsp92II	CATG	4 cut(s)	91, 251, 434, 446
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	193
Lsp1109I	GCAGC	1 cut(s)	313
LweI	GCATC	3 cut(s)	202, 224, 365
MaeI	CTAG	1 cut(s)	562
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	195
MbiI	CCGCTC	1 cut(s)	224
MboI	GATC	1 cut(s)	193
MboII	GAAGA	2 cut(s)	65, 322
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	3 cut(s)	2, 14, 158
MmeI	TCCRAC	2 cut(s)	62, 358
MnlI	CCTC	4 cut(s)	212, 319, 418, 454
Mph1103I	ATGCAT	1 cut(s)	217
MseI	TTAA	2 cut(s)	155, 414
MspI	CCGG	2 cut(s)	116, 517
MspR9I	CCNGG	3 cut(s)	311, 321, 402
Mva1269I	GAATGC	1 cut(s)	518
MvaI	CCWGG	3 cut(s)	311, 321, 402
MvnI	CGCG	1 cut(s)	523
MwoI	GCNNNNNNNGC	2 cut(s)	221, 529
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	4 cut(s)	91, 251, 434, 446
NlaIV	GGNNCC	2 cut(s)	100, 145
NmuCI	GTSAC	1 cut(s)	43
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	1 cut(s)	251
PctI	GAATGC	1 cut(s)	518
PfeI	GAWTC	1 cut(s)	553
PflMI	CCANNNNNTGG	1 cut(s)	388
PfoI	TCCNGGA	1 cut(s)	309
PkrI	GCNGC	3 cut(s)	223, 303, 502
PleI	GAGTC	3 cut(s)	2, 14, 158
PpsI	GAGTC	3 cut(s)	2, 14, 158
Psp6I	CCWGG	3 cut(s)	309, 319, 400
PspEI	GGTNACC	1 cut(s)	43
PspGI	CCWGG	3 cut(s)	309, 319, 400
PspN4I	GGNNCC	2 cut(s)	100, 145
PspPI	GGNCC	2 cut(s)	84, 427
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
SalI	GTCGAC	1 cut(s)	5
SaqAI	TTAA	2 cut(s)	155, 414
SatI	GCNGC	3 cut(s)	222, 302, 501
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	2 cut(s)	84, 427
SchI	GAGTC	3 cut(s)	2, 14, 158
ScrFI	CCNGG	3 cut(s)	311, 321, 402
SfaNI	GCATC	3 cut(s)	202, 224, 365
SgrAI	CRCCGGYG	1 cut(s)	115
SinI	GGWCC	2 cut(s)	84, 427
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	2 cut(s)	222, 500
SspMI	CTAG	1 cut(s)	562
StyD4I	CCNGG	3 cut(s)	309, 319, 400
TaaI	ACNGT	2 cut(s)	160, 479
TaqI	TCGA	2 cut(s)	6, 23
TasI	AATT	1 cut(s)	152
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	2 cut(s)	224, 503
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	2 cut(s)	155, 414
Tru9I	TTAA	2 cut(s)	155, 414
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	43
Van91I	CCANNNNNTGG	1 cut(s)	388
VpaK11BI	GGWCC	2 cut(s)	84, 427
XceI	RCATGY	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	1 cut(s)	562
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.