Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005655

Physical Location & Seq

Genomic Coordinates Forward (+)

46107196 .. 46113974

Gene Structure 6779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAATCAAGCTTTTCTCCTCATTCTCACCACACTAACTGGCTTGATCAACTTGGCAGTGGCTGAAGGTGGGTTTTGCTCTGCTGCTCCTTCCATCATCGACTCGGGTTCGGACACCAATCAGCTGTATTGGAAGGCCACCAATCCCACACTCTCTCCTTCTCATCTTCAAGATCTGCCAGGTTTCACACGAAGTGTCTACAAAAGAGACCATGCTTTAATTACACCTGAAAGTCATGTCTTTAGCCCTTTACCTGAGTGGACCCTGACATCAGGAGCGTATTTGATCACACCTGCAATGGGCTCTCACTTTGTAATGTACCTAGCAAAGATGCAAGAGAACTCACAGTCTGGACTTCCCCCAAATGATGCAGAAAGGTTCATATTTGTGGTTCAGGGTGCTGTGACCTTAACTAATACTTCTGGTACTAGCCAGAAATTAATGGTGGATTCATATGCTTATCTACCTCCTAATTTTCACCATTCCATTAGGTGTGATGCATCTGCTACCCTTGTGGTTTTTGAAAGAAGGCGTTCCTCGCTGGATAATCTACATACTGAGCAGATTGTAGGTTCAACAGACCAGCAGCCACTCCTGGAAACTCCAGGCGAGGTCTTTCAACTAAGGAAGCTTATTCCAACTTCTGTATCATATGACTTCAACATCCATATTATGGATTTCCAGCCTGGGGAATATCTTAATGTGAAGGAGGTGCATTACAATCAGCATGGTTTGCTGCTTCTGGAGGGACAGGGCATTTATCGGTTAGGTGATAGCTGGTACCCTGTTCAGGCAGGAGATGTCATTTGGATGGCGCCATTTGTGCCACAATGGTATGCTGCATTGGGTAAAACTCGGTCACGATATTTGCTTTACAAAGATGTAAATAGGAATCCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003700 GO:0003824 GO:0006139 GO:0006144 GO:0006145 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009889 GO:0009987 GO:0010135 GO:0010136 GO:0010468 GO:0010556 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031326 GO:0034641 GO:0042737 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0046113 GO:0046483 GO:0046700 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055086 GO:0060255 GO:0065007 GO:0071522 GO:0071704 GO:0072521 GO:0072523 GO:0080090 GO:0140110 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

Cupin_2

Protein Analysis

300

Amino Acids

33.57

Weight (kDa)

5.9

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_2	PF07883	224 - 290	5.8e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17050
fragaria_vesca	FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400
malus_domestica	MD04G1055500.v1.1 MD06G1047100.v1.1
prunus_persica	Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1
pyrus_communis	pycom04g04880
rosa_chinensis	RchiOBHm_Chr7g0205681
rosa_laevigata	RLG00000003365
rosa_multiflora	Rmu_sc0000233.1_g000001 Rmu_sc0006124.1_g000008
rosa_roxburghii	Rroxscaffold_3G00252080
rosa_rugosa	Rorug07G0092400 Rorug07G0092400
rosa_samantha	Rh5AG401700 Rh7AG223500 Rh7BG218500 Rh7CG236800 Rh7DG230600
rosa_wichuraiana	Rw5G010210 Rw7G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	301
Acc36I	ACCTGC	1 cut(s)	301
Acc65I	GGTACC	1 cut(s)	780
AccB1I	GGYRCC	2 cut(s)	780, 814
AccB7I	CCANNNNNTGG	1 cut(s)	673
AccI	GTMKAC	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	815
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	3 cut(s)	320, 427, 782
AfiI	CCNNNNNNNGG	4 cut(s)	299, 673, 688, 790
AgsI	TTSAA	5 cut(s)	170, 524, 576, 620, 661
AjnI	CCWGG	4 cut(s)	178, 594, 604, 685
AluBI	AGCT	4 cut(s)	11, 124, 631, 777
AluI	AGCT	4 cut(s)	11, 124, 631, 777
Alw26I	GTCTC	1 cut(s)	201
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	4 cut(s)	83, 586, 736, 839
AseI	ATTAAT	1 cut(s)	440
Asp700I	GAANNNNTTC	1 cut(s)	532
Asp718I	GGTACC	1 cut(s)	780
AspLEI	GCGC	1 cut(s)	817
AspS9I	GGNCC	1 cut(s)	261
AsuHPI	GGTGA	3 cut(s)	19, 470, 782
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	261
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
BanI	GGYRCC	2 cut(s)	780, 814
BanII	GRGCYC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	70, 598, 723, 826
BccI	CCATC	2 cut(s)	101, 805
BciT130I	CCWGG	4 cut(s)	180, 596, 606, 687
BclI	TGATCA	2 cut(s)	45, 285
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	2 cut(s)	323, 429
BfoI	RGCGCY	1 cut(s)	818
BfuAI	ACCTGC	1 cut(s)	301
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	4 cut(s)	84, 587, 737, 840
BlsI	GCNGC	4 cut(s)	85, 588, 738, 841
Bme1390I	CCNGG	4 cut(s)	180, 596, 606, 687
Bme18I	GGWCC	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	103
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	3 cut(s)	263, 782, 816
BmrFI	CCNGG	4 cut(s)	180, 596, 606, 687
BmsI	GCATC	4 cut(s)	321, 358, 487, 509
BpmI	CTGGAG	2 cut(s)	588, 764
BsaHI	GRCGYC	1 cut(s)	815
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	686
BsaXI	ACNNNNNCTCC	2 cut(s)	139, 169
Bsc4I	CCNNNNNNNGG	4 cut(s)	299, 673, 688, 790
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	4 cut(s)	180, 596, 606, 687
BseDI	CCNNGG	1 cut(s)	686
BseGI	GGATG	2 cut(s)	663, 816
BseLI	CCNNNNNNNGG	4 cut(s)	299, 673, 688, 790
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	2 cut(s)	246, 549
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	4 cut(s)	70, 598, 723, 826
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	2 cut(s)	780, 814
BsiHKCI	CYCGRG	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	762
BslI	CCNNNNNNNGG	4 cut(s)	299, 673, 688, 790
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	762
BsnI	GGCC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	3 cut(s)	45, 172, 285
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	247, 550
BspLI	GGNNCC	3 cut(s)	263, 782, 816
BspMI	ACCTGC	1 cut(s)	301
BspT107I	GGYRCC	2 cut(s)	780, 814
BspTNI	GGTCTC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	686
BssMI	GATC	3 cut(s)	45, 172, 285
BssNI	GRCGYC	1 cut(s)	815
Bst2UI	CCWGG	4 cut(s)	180, 596, 606, 687
Bst4CI	ACNGT	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	815
BstAPI	GCANNNNNTGC	1 cut(s)	733
BstDEI	CTNAG	3 cut(s)	255, 558, 623
BstF5I	GGATG	2 cut(s)	663, 816
BstH2I	RGCGCY	1 cut(s)	818
BstHHI	GCGC	1 cut(s)	817
BstKTI	GATC	3 cut(s)	48, 175, 288
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	3 cut(s)	45, 172, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	538, 733, 823
BstNI	CCWGG	4 cut(s)	180, 596, 606, 687
BstSCI	CCNGG	4 cut(s)	178, 594, 604, 685
BstV1I	GCAGC	4 cut(s)	70, 598, 723, 826
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	663, 816
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	301
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	817
Cfr13I	GGNCC	1 cut(s)	261
Csp6I	GTAC	3 cut(s)	319, 426, 781
CviAII	CATG	3 cut(s)	212, 236, 728
CviQI	GTAC	3 cut(s)	319, 426, 781
DdeI	CTNAG	3 cut(s)	255, 558, 623
DinI	GGCGCC	1 cut(s)	816
DpnI	GATC	3 cut(s)	47, 174, 287
DpnII	GATC	3 cut(s)	45, 172, 285
DraIII	CACNNNGTG	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	84
Eco88I	CYCGRG	1 cut(s)	103
EcoRII	CCWGG	4 cut(s)	178, 594, 604, 685
EcoT22I	ATGCAT	1 cut(s)	502
EcoT38I	GRGCYC	1 cut(s)	305
EgeI	GGCGCC	1 cut(s)	816
EheI	GGCGCC	1 cut(s)	816
FaeI	CATG	3 cut(s)	215, 239, 731
FaqI	GGGAC	1 cut(s)	762
FatI	CATG	3 cut(s)	211, 235, 727
FauNDI	CATATG	2 cut(s)	454, 652
FbaI	TGATCA	2 cut(s)	45, 285
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	4 cut(s)	84, 587, 737, 840
FokI	GGATG	2 cut(s)	650, 823
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	4 cut(s)	84, 587, 737, 840
FspBI	CTAG	2 cut(s)	323, 429
GlaI	GCGC	1 cut(s)	816
GluI	GCNGC	4 cut(s)	84, 587, 737, 840
GsuI	CTGGAG	2 cut(s)	588, 764
HaeII	RGCGCY	1 cut(s)	818
HaeIII	GGCC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	817
Hin1I	GRCGYC	1 cut(s)	815
Hin1II	CATG	3 cut(s)	215, 239, 731
Hin6I	GCGC	1 cut(s)	815
HinP1I	GCGC	1 cut(s)	815
HindIII	AAGCTT	2 cut(s)	9, 629
HinfI	GANTC	4 cut(s)	4, 101, 449, 892
HphI	GGTGA	3 cut(s)	19, 470, 782
Hpy166II	GTNNAC	2 cut(s)	199, 261
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	5 cut(s)	170, 273, 351, 743, 861
Hpy8I	GTNNAC	2 cut(s)	199, 261
HpyAV	CCTTC	6 cut(s)	59, 99, 127, 168, 522, 700
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4V	TGCA	6 cut(s)	296, 334, 371, 500, 715, 842
HpyF10VI	GCNNNNNNNGC	3 cut(s)	538, 733, 823
HpyF3I	CTNAG	3 cut(s)	255, 558, 623
Hsp92I	GRCGYC	1 cut(s)	815
Hsp92II	CATG	3 cut(s)	215, 239, 731
HspAI	GCGC	1 cut(s)	815
KasI	GGCGCC	1 cut(s)	814
KpnI	GGTACC	1 cut(s)	784
Ksp22I	TGATCA	2 cut(s)	45, 285
Kzo9I	GATC	3 cut(s)	45, 172, 285
LmnI	GCTCC	2 cut(s)	91, 275
Lsp1109I	GCAGC	4 cut(s)	70, 598, 723, 826
LweI	GCATC	4 cut(s)	321, 358, 487, 509
MaeI	CTAG	2 cut(s)	323, 429
MaeIII	GTNAC	2 cut(s)	403, 858
MalI	GATC	3 cut(s)	47, 174, 287
MboI	GATC	3 cut(s)	45, 172, 285
MboII	GAAGA	1 cut(s)	158
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	3 cut(s)	219, 437, 472
Mly113I	GGCGCC	1 cut(s)	815
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	662
MnlI	CCTC	6 cut(s)	29, 477, 547, 604, 703, 739
Mph1103I	ATGCAT	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	532
MseI	TTAA	4 cut(s)	218, 410, 440, 699
MslI	CAYNNNNRTG	2 cut(s)	386, 809
MspA1I	CMGCKG	1 cut(s)	124
MspR9I	CCNGG	4 cut(s)	180, 596, 606, 687
MvaI	CCWGG	4 cut(s)	180, 596, 606, 687
MwoI	GCNNNNNNNGC	3 cut(s)	538, 733, 823
NarI	GGCGCC	1 cut(s)	815
NdeI	CATATG	2 cut(s)	454, 652
NdeII	GATC	3 cut(s)	45, 172, 285
NlaIII	CATG	3 cut(s)	215, 239, 731
NlaIV	GGNNCC	3 cut(s)	263, 782, 816
NmuCI	GTSAC	2 cut(s)	403, 858
NsiI	ATGCAT	1 cut(s)	502
PaqCI	CACCTGC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	3 cut(s)	4, 449, 892
PflMI	CCANNNNNTGG	1 cut(s)	673
PfoI	TCCNGGA	1 cut(s)	594
PkrI	GCNGC	4 cut(s)	85, 588, 738, 841
PleI	GAGTC	1 cut(s)	95
PluTI	GGCGCC	1 cut(s)	818
PpsI	GAGTC	1 cut(s)	95
PshBI	ATTAAT	1 cut(s)	440
Psp6I	CCWGG	4 cut(s)	178, 594, 604, 685
PspGI	CCWGG	4 cut(s)	178, 594, 604, 685
PspN4I	GGNNCC	3 cut(s)	263, 782, 816
PspPI	GGNCC	1 cut(s)	261
PstNI	CAGNNNCTG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	124
RsaI	GTAC	3 cut(s)	320, 427, 782
RsaNI	GTAC	3 cut(s)	319, 426, 781
RseI	CAYNNNNRTG	2 cut(s)	386, 809
SaqAI	TTAA	4 cut(s)	218, 410, 440, 699
SatI	GCNGC	4 cut(s)	84, 587, 737, 840
Sau3AI	GATC	3 cut(s)	45, 172, 285
Sau96I	GGNCC	1 cut(s)	261
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	4 cut(s)	180, 596, 606, 687
SduI	GDGCHC	1 cut(s)	305
SfaNI	GCATC	4 cut(s)	321, 358, 487, 509
SfoI	GGCGCC	1 cut(s)	816
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	386, 809
Sse9I	AATT	3 cut(s)	219, 437, 472
SspDI	GGCGCC	1 cut(s)	814
SspMI	CTAG	2 cut(s)	323, 429
StyD4I	CCNGG	4 cut(s)	178, 594, 604, 685
TaaI	ACNGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	99
TaqII	GACCGA	1 cut(s)	846
TasI	AATT	3 cut(s)	219, 437, 472
TfiI	GAWTC	3 cut(s)	4, 449, 892
Tru1I	TTAA	4 cut(s)	218, 410, 440, 699
Tru9I	TTAA	4 cut(s)	218, 410, 440, 699
TscAI	CASTG	1 cut(s)	63
TseFI	GTSAC	2 cut(s)	403, 858
TseI	GCWGC	4 cut(s)	83, 586, 736, 839
Tsp45I	GTSAC	2 cut(s)	403, 858
TspDTI	ATGAA	3 cut(s)	17, 370, 441
TspRI	CASTG	1 cut(s)	63
Van91I	CCANNNNNTGG	1 cut(s)	673
VpaK11BI	GGWCC	1 cut(s)	261
VspI	ATTAAT	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	2 cut(s)	323, 429
Zsp2I	ATGCAT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.