Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005655

Physical Location & Seq

Genomic Coordinates Reverse (-)

6672169 .. 6677076

Gene Structure 4908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1055500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAATCACGCTTTGCTCATCTTTGTCATCACTCTAAGATTGCTCAAAATGGCAGTGGCTGATGAGGGTATTTGCCCTTCTACTTCAATGGTCGACTCGGGTTCGGACTTGAAGCATTTGTATTGGAAGGTCACCAATCCCACACTCTCTCCTTCACATCTTCAAGACTTGCCAGGGTTCACACGCAGTGTTTACAAACAAGACCATGCTTTAATAACACCAGAGAGTCACGTCTTTAGTCCTTTACCTGACTGGACTCTGACATTAGGAGCGTATTTGATAACGCCGGCCATGGGTTCACACTTTGTAATGTACCTGGCAAAGATGCAAGAAAACTCACGATCTGGACTCCCCCCAAATGATGTTGAAAGGTTCATATTTGTGGTCCAGGGTGCTGTCACTCTCACTAATGTTTCTGGTACTAGCGACATATTAACGGTGGACTCATATGCTTATCTACCTCCGAATGTTGATCATTCCCTCAGGTGTGATGCATCTGCCACTCTTGTGGTATTCGAGAGAAGGCATGATTCTCTGGAAAATCAATCTACTGACCAGATTACAGGTTCAACAGACAAGCAGCCTCTCCTGGAAACTCCAGGCGAGGTCTTCCAATTAAGGAAGCTTATTCCAACATCTATATCCTATGACTTCAATATCCATATAATGGACTTCCAGCCTGGGGAGTATCTTAATGTGAAGGAGGTGCATTACAATCAGCATGGTTTATTGCTCCTGGAGGGACAGGGTATTTACCGATTGGGTGATAGCTGGTACCCTGTTCAAGCAGGCGATGTCATTTGGATGGCACCATTTGTGCCTCAATGGTATGCGGCATTGGGTAAACACCGGACGCGATATTTGCTGTACAAAGATGTGAATAGGAATCCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003700 GO:0003824 GO:0006139 GO:0006144 GO:0006145 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009889 GO:0009987 GO:0010135 GO:0010136 GO:0010468 GO:0010556 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031326 GO:0034641 GO:0042737 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0046113 GO:0046483 GO:0046700 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055086 GO:0060255 GO:0065007 GO:0071522 GO:0071704 GO:0072521 GO:0072523 GO:0080090 GO:0140110 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

Cupin_2

Protein Analysis

299

Amino Acids

33.61

Weight (kDa)

5.8

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_2	PF07883	222 - 288	7.7e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17050
fragaria_vesca	FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400
malus_domestica	MD04G1055500.v1.1 MD06G1047100.v1.1
prunus_persica	Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1
pyrus_communis	pycom04g04880
rosa_chinensis	RchiOBHm_Chr7g0205681
rosa_laevigata	RLG00000003365
rosa_multiflora	Rmu_sc0000233.1_g000001 Rmu_sc0006124.1_g000008
rosa_roxburghii	Rroxscaffold_3G00252080
rosa_rugosa	Rorug07G0092400 Rorug07G0092400
rosa_samantha	Rh5AG401700 Rh7AG223500 Rh7BG218500 Rh7CG236800 Rh7DG230600
rosa_wichuraiana	Rw5G010210 Rw7G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	774
AccB1I	GGYRCC	2 cut(s)	774, 808
AccB7I	CCANNNNNTGG	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	856
AciI	CCGC	1 cut(s)	833
AcoI	YGGCCR	1 cut(s)	288
AdeI	CACNNNGTG	1 cut(s)	188
AfaI	GTAC	4 cut(s)	314, 421, 776, 869
AfiI	CCNNNNNNNGG	3 cut(s)	293, 667, 682
AgsI	TTSAA	7 cut(s)	87, 112, 164, 368, 570, 655, 785
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	7 cut(s)	172, 315, 387, 588, 598, 679, 735
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	2 cut(s)	625, 771
AluI	AGCT	2 cut(s)	625, 771
AlwNI	CAGNNNCTG	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	97
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	580
ArsI	GACNNNNNNTTYG	2 cut(s)	844, 876
Asp718I	GGTACC	1 cut(s)	774
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	124, 776
AvaI	CYCGRG	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	385
AxyI	CCTNAGG	1 cut(s)	482
BanI	GGYRCC	2 cut(s)	774, 808
BarI	GAAGNNNNNNTAC	2 cut(s)	61, 93
BbsI	GAAGAC	1 cut(s)	601
BbvI	GCAGC	1 cut(s)	592
BccI	CCATC	1 cut(s)	799
BciT130I	CCWGG	7 cut(s)	174, 317, 389, 590, 600, 681, 737
BclI	TGATCA	1 cut(s)	472
BfaI	CTAG	2 cut(s)	423, 895
BisI	GCNGC	2 cut(s)	581, 834
BlsI	GCNGC	2 cut(s)	582, 835
Bme1390I	CCNGG	7 cut(s)	174, 317, 389, 590, 600, 681, 737
Bme18I	GGWCC	1 cut(s)	385
BmeT110I	CYCGRG	1 cut(s)	97
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	2 cut(s)	776, 810
BmrFI	CCNGG	7 cut(s)	174, 317, 389, 590, 600, 681, 737
BmsI	GCATC	3 cut(s)	315, 481, 503
BpiI	GAAGAC	1 cut(s)	601
BpmI	CTGGAG	2 cut(s)	582, 758
BsaJI	CCNNGG	4 cut(s)	173, 291, 388, 680
BsaWI	WCCGGW	1 cut(s)	849
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
Bsc4I	CCNNNNNNNGG	3 cut(s)	293, 667, 682
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	257
Bse21I	CCTNAGG	1 cut(s)	482
BseBI	CCWGG	7 cut(s)	174, 317, 389, 590, 600, 681, 737
BseDI	CCNNGG	4 cut(s)	173, 291, 388, 680
BseGI	GGATG	1 cut(s)	810
BseLI	CCNNNNNNNGG	3 cut(s)	293, 667, 682
BseMII	CTCAG	1 cut(s)	496
BseNI	ACTGG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	592
Bsh1236I	CGCG	1 cut(s)	856
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	2 cut(s)	774, 808
BsiHKCI	CYCGRG	1 cut(s)	97
BsiSI	CCGG	2 cut(s)	287, 850
BslFI	GGGAC	1 cut(s)	756
BslI	CCNNNNNNNGG	3 cut(s)	293, 667, 682
BsmFI	GGGAC	1 cut(s)	756
BsnI	GGCC	1 cut(s)	290
BsoBI	CYCGRG	1 cut(s)	97
Bsp1407I	TGTACA	1 cut(s)	867
Bsp143I	GATC	2 cut(s)	341, 472
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	1 cut(s)	833
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	1 cut(s)	495
BspFNI	CGCG	1 cut(s)	856
BspLI	GGNNCC	2 cut(s)	776, 810
BspT107I	GGYRCC	2 cut(s)	774, 808
BsrFI	RCCGGY	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	867
BsrI	ACTGG	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	4 cut(s)	173, 291, 388, 680
BssMI	GATC	2 cut(s)	341, 472
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	7 cut(s)	174, 317, 389, 590, 600, 681, 737
Bst4CI	ACNGT	1 cut(s)	439
BstAUI	TGTACA	1 cut(s)	867
BstC8I	GCNNGC	2 cut(s)	288, 790
BstDEI	CTNAG	2 cut(s)	35, 482
BstDSI	CCRYGG	1 cut(s)	291
BstEII	GGTNACC	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	810
BstFNI	CGCG	1 cut(s)	856
BstKTI	GATC	2 cut(s)	344, 475
BstMBI	GATC	2 cut(s)	341, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	862
BstNI	CCWGG	7 cut(s)	174, 317, 389, 590, 600, 681, 737
BstPI	GGTNACC	1 cut(s)	130
BstSCI	CCNGG	7 cut(s)	172, 315, 387, 588, 598, 679, 735
BstUI	CGCG	1 cut(s)	856
BstV1I	GCAGC	1 cut(s)	592
BstV2I	GAAGAC	1 cut(s)	601
BstXI	CCANNNNNNTGG	1 cut(s)	508
Bsu36I	CCTNAGG	1 cut(s)	482
BsuRI	GGCC	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	291
BtgZI	GCGATG	1 cut(s)	807
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	810
BtsI	GCAGTG	2 cut(s)	60, 193
BtsIMutI	CAGTG	2 cut(s)	60, 193
Cac8I	GCNNGC	2 cut(s)	288, 790
CaiI	CAGNNNCTG	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	385
CseI	GACGC	1 cut(s)	862
Csp6I	GTAC	4 cut(s)	313, 420, 775, 868
CviAII	CATG	4 cut(s)	206, 292, 527, 722
CviJI	RGCY	6 cut(s)	59, 290, 583, 625, 679, 771
CviKI_1	RGCY	6 cut(s)	59, 290, 583, 625, 679, 771
CviQI	GTAC	4 cut(s)	313, 420, 775, 868
DdeI	CTNAG	2 cut(s)	35, 482
DpnI	GATC	2 cut(s)	343, 474
DpnII	GATC	2 cut(s)	341, 472
DraIII	CACNNNGTG	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	385
Eco81I	CCTNAGG	1 cut(s)	482
Eco88I	CYCGRG	1 cut(s)	97
Eco91I	GGTNACC	1 cut(s)	130
EcoO65I	GGTNACC	1 cut(s)	130
EcoRII	CCWGG	7 cut(s)	172, 315, 387, 588, 598, 679, 735
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	4 cut(s)	209, 295, 530, 725
FaqI	GGGAC	1 cut(s)	756
FatI	CATG	4 cut(s)	205, 291, 526, 721
FauNDI	CATATG	1 cut(s)	448
FbaI	TGATCA	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	581, 834
FokI	GGATG	1 cut(s)	817
Fsp4HI	GCNGC	2 cut(s)	581, 834
FspBI	CTAG	2 cut(s)	423, 895
GluI	GCNGC	2 cut(s)	581, 834
GsuI	CTGGAG	2 cut(s)	582, 758
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	2 cut(s)	287, 850
HgaI	GACGC	1 cut(s)	862
Hin1II	CATG	4 cut(s)	209, 295, 530, 725
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	8 cut(s)	4, 95, 226, 256, 348, 443, 530, 886
HpaII	CCGG	2 cut(s)	287, 850
HphI	GGTGA	2 cut(s)	124, 776
Hpy166II	GTNNAC	6 cut(s)	94, 180, 193, 299, 442, 845
Hpy188I	TCNGA	3 cut(s)	106, 261, 465
Hpy188III	TCNNGA	5 cut(s)	164, 339, 345, 517, 536
Hpy8I	GTNNAC	6 cut(s)	94, 180, 193, 299, 442, 845
HpyAV	CCTTC	5 cut(s)	87, 121, 162, 516, 694
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	328, 494, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	862
HpyF3I	CTNAG	2 cut(s)	35, 482
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	209, 295, 530, 725
KpnI	GGTACC	1 cut(s)	778
KroI	GCCGGC	1 cut(s)	286
KroNI	GCCGGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	2 cut(s)	341, 472
LmnI	GCTCC	2 cut(s)	269, 738
Lsp1109I	GCAGC	1 cut(s)	592
LweI	GCATC	3 cut(s)	315, 481, 503
MaeI	CTAG	2 cut(s)	423, 895
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	3 cut(s)	130, 227, 397
MalI	GATC	2 cut(s)	343, 474
MboI	GATC	2 cut(s)	341, 472
MboII	GAAGA	2 cut(s)	152, 601
MluCI	AATT	1 cut(s)	614
MlyI	GAGTC	5 cut(s)	89, 235, 250, 342, 437
MmeI	TCCRAC	1 cut(s)	656
MnlI	CCTC	8 cut(s)	58, 471, 491, 594, 598, 697, 733, 831
Mph1103I	ATGCAT	1 cut(s)	496
MroNI	GCCGGC	1 cut(s)	286
MseI	TTAA	4 cut(s)	212, 434, 617, 693
MslI	CAYNNNNRTG	3 cut(s)	380, 506, 803
MspI	CCGG	2 cut(s)	287, 850
MspR9I	CCNGG	7 cut(s)	174, 317, 389, 590, 600, 681, 737
MvaI	CCWGG	7 cut(s)	174, 317, 389, 590, 600, 681, 737
MvnI	CGCG	1 cut(s)	856
MwoI	GCNNNNNNNGC	1 cut(s)	862
NaeI	GCCGGC	1 cut(s)	288
NcoI	CCATGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	2 cut(s)	341, 472
NgoMIV	GCCGGC	1 cut(s)	286
NlaIII	CATG	4 cut(s)	209, 295, 530, 725
NlaIV	GGNNCC	2 cut(s)	776, 810
NmuCI	GTSAC	3 cut(s)	130, 227, 397
NsiI	ATGCAT	1 cut(s)	496
OliI	CACNNNNGTG	1 cut(s)	506
PdiI	GCCGGC	1 cut(s)	288
PfeI	GAWTC	3 cut(s)	4, 530, 886
PflMI	CCANNNNNTGG	1 cut(s)	667
PfoI	TCCNGGA	2 cut(s)	588, 735
PkrI	GCNGC	2 cut(s)	582, 835
PleI	GAGTC	5 cut(s)	89, 234, 250, 342, 437
PpsI	GAGTC	5 cut(s)	89, 234, 250, 342, 437
Psp6I	CCWGG	7 cut(s)	172, 315, 387, 588, 598, 679, 735
PspEI	GGTNACC	1 cut(s)	130
PspGI	CCWGG	7 cut(s)	172, 315, 387, 588, 598, 679, 735
PspN4I	GGNNCC	2 cut(s)	776, 810
PspPI	GGNCC	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	59
RsaI	GTAC	4 cut(s)	314, 421, 776, 869
RsaNI	GTAC	4 cut(s)	313, 420, 775, 868
RseI	CAYNNNNRTG	3 cut(s)	380, 506, 803
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	4 cut(s)	212, 434, 617, 693
SatI	GCNGC	2 cut(s)	581, 834
Sau3AI	GATC	2 cut(s)	341, 472
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	5 cut(s)	89, 235, 250, 342, 437
ScrFI	CCNGG	7 cut(s)	174, 317, 389, 590, 600, 681, 737
SfaNI	GCATC	3 cut(s)	315, 481, 503
SinI	GGWCC	1 cut(s)	385
SmiMI	CAYNNNNRTG	3 cut(s)	380, 506, 803
Sse9I	AATT	1 cut(s)	614
SsiI	CCGC	1 cut(s)	833
SspMI	CTAG	2 cut(s)	423, 895
StyD4I	CCNGG	7 cut(s)	172, 315, 387, 588, 598, 679, 735
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	93, 516
TasI	AATT	1 cut(s)	614
TatI	WGTACW	1 cut(s)	867
TauI	GCSGC	1 cut(s)	836
TfiI	GAWTC	3 cut(s)	4, 530, 886
Tru1I	TTAA	4 cut(s)	212, 434, 617, 693
Tru9I	TTAA	4 cut(s)	212, 434, 617, 693
TscAI	CASTG	2 cut(s)	60, 193
TseFI	GTSAC	3 cut(s)	130, 227, 397
TseI	GCWGC	1 cut(s)	580
Tsp45I	GTSAC	3 cut(s)	130, 227, 397
TspDTI	ATGAA	2 cut(s)	17, 364
TspRI	CASTG	2 cut(s)	60, 193
Van91I	CCANNNNNTGG	1 cut(s)	667
VpaK11BI	GGWCC	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	2 cut(s)	423, 895
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.