Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005655

Physical Location & Seq

Genomic Coordinates Reverse (-)

22825403 .. 22829278

Gene Structure 3876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG230600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAATCAAGCTTTTCTCCTCATTCTCACCACACTAACTGTTTCAGGCTTGATCAACTTGGCAGTTGCTGAAGGTGGGTTTTGCTCTGCTGCTCCTTCAATCATCGACTCGGGTTCGGACACCAATCAGCTGTATTGGAAGGCCACCAATCCCACACTCTCTCCTTCTCATCTTCAAGACCTGCCAGGTTTCACACGAAGTGTCTACAAAAGAGACCATGCTTTAATTACACCAGAGAGTCATGTCTTTAGCCCTTTACCTGAGTGGACCCTGACATCAGGAGCGTATTTGATCACACCTGCAATGGGCTCTCACTTTGTAATGTACCTAGCAAAGATGCAAGAGAACTCGCAGTCTGGACTTCCCCCAAATGATGCAGAAAGGTTCATATTTGTGGTTCAGGGTGCTGTGACCTTAACTAATACTTCTGGTATTAGCCAGAAATTAATGGTGGACTCATATGCTTATCTACCTCCTAATTTTCACCATTCCATTAGGTGTGATGCATCTGCTACCCTTGTGGTTTTTGAAAGAAGGCGTTCCTCTCTGGATAATCTACATACTGAGCAGATTGTTGGTTCAACAGACCAGCAGCCACTCCTGGAAACTCCAGGTGAGGTCTTTCAACTAAGGAAGCTTATTCCAACTTCTGTATCATATGACTTCAACATCCATATTATGGATTTCCAGCCTGGGGAATATCTTAATGTGAAGGAGGTGCATTACAATCAGCATGGTTTATTGCTTCTGGAGGGACAGGGCATTTATCGGTTAGGTGATAGCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003700 GO:0003824 GO:0006139 GO:0006144 GO:0006145 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009889 GO:0009987 GO:0010135 GO:0010136 GO:0010468 GO:0010556 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031326 GO:0034641 GO:0042737 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0046113 GO:0046483 GO:0046700 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055086 GO:0060255 GO:0065007 GO:0071522 GO:0071704 GO:0072521 GO:0072523 GO:0080090 GO:0140110 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

Cupin_2

Protein Analysis

262

Amino Acids

29.09

Weight (kDa)

5.48

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17050
fragaria_vesca	FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400
malus_domestica	MD04G1055500.v1.1 MD06G1047100.v1.1
prunus_persica	Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1
pyrus_communis	pycom04g04880
rosa_chinensis	RchiOBHm_Chr7g0205681
rosa_laevigata	RLG00000003365
rosa_multiflora	Rmu_sc0000233.1_g000001 Rmu_sc0006124.1_g000008
rosa_roxburghii	Rroxscaffold_3G00252080
rosa_rugosa	Rorug07G0092400 Rorug07G0092400
rosa_samantha	Rh5AG401700 Rh7AG223500 Rh7BG218500 Rh7CG236800 Rh7DG230600
rosa_wichuraiana	Rw5G010210 Rw7G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc36I	ACCTGC	2 cut(s)	189, 307
AccB7I	CCANNNNNTGG	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	90
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	3 cut(s)	305, 679, 694
AgsI	TTSAA	6 cut(s)	99, 176, 530, 582, 626, 667
AjnI	CCWGG	4 cut(s)	184, 600, 610, 691
AluBI	AGCT	4 cut(s)	11, 130, 637, 783
AluI	AGCT	4 cut(s)	11, 130, 637, 783
Alw26I	GTCTC	1 cut(s)	207
AlwNI	CAGNNNCTG	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	89, 592
AseI	ATTAAT	1 cut(s)	446
Asp700I	GAANNNNTTC	1 cut(s)	538
AspS9I	GGNCC	1 cut(s)	267
AsuHPI	GGTGA	4 cut(s)	19, 476, 626, 788
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	267
BaeI	ACNNNNGTAYC	2 cut(s)	636, 669
BanII	GRGCYC	1 cut(s)	311
BbvI	GCAGC	2 cut(s)	76, 604
BciT130I	CCWGG	4 cut(s)	186, 602, 612, 693
BclI	TGATCA	2 cut(s)	51, 291
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	329
BfuAI	ACCTGC	2 cut(s)	189, 307
BisI	GCNGC	2 cut(s)	90, 593
BlsI	GCNGC	2 cut(s)	91, 594
Bme1390I	CCNGG	4 cut(s)	186, 602, 612, 693
Bme18I	GGWCC	1 cut(s)	267
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	4 cut(s)	186, 602, 612, 693
BmsI	GCATC	4 cut(s)	327, 364, 493, 515
BpmI	CTGGAG	2 cut(s)	594, 770
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	692
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 679, 694
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	4 cut(s)	186, 602, 612, 693
BseDI	CCNNGG	1 cut(s)	692
BseGI	GGATG	1 cut(s)	669
BseLI	CCNNNNNNNGG	3 cut(s)	305, 679, 694
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	252, 555
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	76, 604
BshFI	GGCC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	768
BslI	CCNNNNNNNGG	3 cut(s)	305, 679, 694
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	1 cut(s)	768
BsnI	GGCC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	311
Bsp143I	GATC	2 cut(s)	51, 291
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	2 cut(s)	253, 556
BspLI	GGNNCC	1 cut(s)	269
BspMI	ACCTGC	2 cut(s)	189, 307
BspTNI	GGTCTC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	309
BssECI	CCNNGG	1 cut(s)	692
BssMI	GATC	2 cut(s)	51, 291
Bst2UI	CCWGG	4 cut(s)	186, 602, 612, 693
Bst4CI	ACNGT	1 cut(s)	40
BstDEI	CTNAG	3 cut(s)	261, 564, 629
BstF5I	GGATG	1 cut(s)	669
BstKTI	GATC	2 cut(s)	54, 294
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	2 cut(s)	51, 291
BstNI	CCWGG	4 cut(s)	186, 602, 612, 693
BstSCI	CCNGG	4 cut(s)	184, 600, 610, 691
BstV1I	GCAGC	2 cut(s)	76, 604
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	669
BveI	ACCTGC	2 cut(s)	189, 307
CaiI	CAGNNNCTG	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	3 cut(s)	218, 242, 734
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	3 cut(s)	261, 564, 629
DpnI	GATC	2 cut(s)	53, 293
DpnII	GATC	2 cut(s)	51, 291
DraIII	CACNNNGTG	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	311
Eco31I	GGTCTC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	109
EcoRII	CCWGG	4 cut(s)	184, 600, 610, 691
EcoT22I	ATGCAT	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	311
FaeI	CATG	3 cut(s)	221, 245, 737
FaqI	GGGAC	1 cut(s)	768
FatI	CATG	3 cut(s)	217, 241, 733
FauNDI	CATATG	2 cut(s)	460, 658
FbaI	TGATCA	2 cut(s)	51, 291
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	90, 593
FokI	GGATG	1 cut(s)	656
FriOI	GRGCYC	1 cut(s)	311
Fsp4HI	GCNGC	2 cut(s)	90, 593
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	2 cut(s)	90, 593
GsuI	CTGGAG	2 cut(s)	594, 770
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	221, 245, 737
HindIII	AAGCTT	2 cut(s)	9, 635
HinfI	GANTC	4 cut(s)	4, 107, 238, 455
HphI	GGTGA	4 cut(s)	19, 476, 626, 788
Hpy166II	GTNNAC	3 cut(s)	205, 267, 454
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	5 cut(s)	176, 279, 357, 548, 749
Hpy8I	GTNNAC	3 cut(s)	205, 267, 454
HpyAV	CCTTC	6 cut(s)	65, 105, 133, 174, 528, 706
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	5 cut(s)	302, 340, 377, 506, 721
HpyF3I	CTNAG	3 cut(s)	261, 564, 629
Hsp92II	CATG	3 cut(s)	221, 245, 737
Ksp22I	TGATCA	2 cut(s)	51, 291
Kzo9I	GATC	2 cut(s)	51, 291
LmnI	GCTCC	2 cut(s)	97, 281
Lsp1109I	GCAGC	2 cut(s)	76, 604
LweI	GCATC	4 cut(s)	327, 364, 493, 515
MaeI	CTAG	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	2 cut(s)	53, 293
MboI	GATC	2 cut(s)	51, 291
MboII	GAAGA	1 cut(s)	164
MhlI	GDGCHC	1 cut(s)	311
MluCI	AATT	3 cut(s)	225, 443, 478
MlyI	GAGTC	3 cut(s)	101, 247, 449
MmeI	TCCRAC	1 cut(s)	668
MnlI	CCTC	6 cut(s)	29, 483, 553, 610, 709, 745
Mph1103I	ATGCAT	1 cut(s)	508
MroXI	GAANNNNTTC	1 cut(s)	538
MseI	TTAA	4 cut(s)	224, 416, 446, 705
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	130
MspR9I	CCNGG	4 cut(s)	186, 602, 612, 693
MvaI	CCWGG	4 cut(s)	186, 602, 612, 693
NdeI	CATATG	2 cut(s)	460, 658
NdeII	GATC	2 cut(s)	51, 291
NlaIII	CATG	3 cut(s)	221, 245, 737
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	409
NsiI	ATGCAT	1 cut(s)	508
PaqCI	CACCTGC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	679
PfoI	TCCNGGA	1 cut(s)	600
PkrI	GCNGC	2 cut(s)	91, 594
PleI	GAGTC	3 cut(s)	101, 246, 449
PpsI	GAGTC	3 cut(s)	101, 246, 449
PshBI	ATTAAT	1 cut(s)	446
Psp6I	CCWGG	4 cut(s)	184, 600, 610, 691
PspGI	CCWGG	4 cut(s)	184, 600, 610, 691
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	68
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	4 cut(s)	224, 416, 446, 705
SatI	GCNGC	2 cut(s)	90, 593
Sau3AI	GATC	2 cut(s)	51, 291
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	3 cut(s)	101, 247, 449
ScrFI	CCNGG	4 cut(s)	186, 602, 612, 693
SduI	GDGCHC	1 cut(s)	311
SfaNI	GCATC	4 cut(s)	327, 364, 493, 515
SinI	GGWCC	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	392
Sse9I	AATT	3 cut(s)	225, 443, 478
SspMI	CTAG	1 cut(s)	329
StyD4I	CCNGG	4 cut(s)	184, 600, 610, 691
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	225, 443, 478
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	4 cut(s)	224, 416, 446, 705
Tru9I	TTAA	4 cut(s)	224, 416, 446, 705
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	2 cut(s)	89, 592
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	2 cut(s)	17, 376
Van91I	CCANNNNNTGG	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	267
VspI	ATTAAT	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	538
XspI	CTAG	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.