Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000233.1

Orthogroup ID

OG0005655

Physical Location & Seq

Genomic Coordinates Forward (+)

3365 .. 9773

Gene Structure 6409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000233.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atgaatcaagcttttcttctcattctcaccacactaactgtttcaggcttgatcaacttggcagtggctgaaggtgggttttgctctgctgctccttcaatcatcaactcgggttcggacaccaaccagctgtattggaaggccaccaatcccacactctctccttctcatcttcaagacctgccaggtttcacacgaagtgtctacaaaagagaccatgctttaattacaccagaaagtcatgtctttagccctttacctgagtggaccctgacatcaggagcgtatttgatcacacctgcaatgggctctcactttgtaatgtacctagcaaagatgcaagagaactcgcagtctggacttcccccaaatgatgcagaaaggttcatatttgtggttcagggtgctgtgaccttaactaatacttctggtattagccagaaattaatggtggactcatatgcttatctacctcctaattttcaccattccattaggtgtgatgcatctgctacccttgtggtttttgaaagaaggcgttcctctctggataatctacatactgagcagattgttggttcaacagaccagcagccactcctggaaactccaggcgaggtctttcaactaaggaagcttattccaacttctgtatcatatgacttcaacatccatattatggatttccagcctggggaatatcttaatgtgaaggaggtgcattacaatcagcatggtttattgcttctggagggacagggcatttatcggttaggtgatagctggtaccctgttcaggcaggagatgtcatttggatggcgccatttgtgccacaatggtatgcagcattggaaggtgatgggactgaggaaattaagatcccattgatgcgtgattcaaggctccaagaggtaggatcctctactgcctcgaaagaaactggtattactgcagcattgccgcctagtatgatgtcatcagatgaagaccctactctggagaacgtgctctacagcgctgcgagaagcaatcgaatgaatcgattcaggatttacttatttgcttgcacatggggatgtgaggtttgttttcttaacaagctagtcgtaaactacttctacggattcttggggaagaactgtagagctggtgttgcaaaattacattgtgcttcacatgaacatcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000255 GO:0000256 GO:0003674 GO:0003700 GO:0003824 GO:0006139 GO:0006144 GO:0006145 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009112 GO:0009889 GO:0009987 GO:0010135 GO:0010136 GO:0010468 GO:0010556 GO:0016787 GO:0016810 GO:0016813 GO:0017144 GO:0019219 GO:0019222 GO:0019439 GO:0031323 GO:0031326 GO:0034641 GO:0042737 GO:0043603 GO:0043605 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0046113 GO:0046483 GO:0046700 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055086 GO:0060255 GO:0065007 GO:0071522 GO:0071704 GO:0072521 GO:0072523 GO:0080090 GO:0140110 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00230 ko01120 map00230 map01120

Pfam Domains

Protein Families

Cupin_2

Protein Analysis

396

Amino Acids

44.06

Weight (kDa)

5.76

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005655)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17050
fragaria_vesca	FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400 FvH4_5g20400
malus_domestica	MD04G1055500.v1.1 MD06G1047100.v1.1
prunus_persica	Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1 Prupe.5G055300_v2.0.a1
pyrus_communis	pycom04g04880
rosa_chinensis	RchiOBHm_Chr7g0205681
rosa_laevigata	RLG00000003365
rosa_multiflora	Rmu_sc0000233.1_g000001 Rmu_sc0006124.1_g000008
rosa_roxburghii	Rroxscaffold_3G00252080
rosa_rugosa	Rorug07G0092400 Rorug07G0092400
rosa_samantha	Rh5AG401700 Rh7AG223500 Rh7BG218500 Rh7CG236800 Rh7DG230600
rosa_wichuraiana	Rw5G010210 Rw7G019270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc36I	ACCTGC	2 cut(s)	189, 307
Acc65I	GGTACC	1 cut(s)	786
AccB1I	GGYRCC	2 cut(s)	786, 820
AccB7I	CCANNNNNTGG	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	1 cut(s)	962
AclWI	GGATC	3 cut(s)	874, 912, 925
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	821
AdeI	CACNNNGTG	1 cut(s)	200
AfaI	GTAC	2 cut(s)	326, 788
AfeI	AGCGCT	1 cut(s)	1018
AfiI	CCNNNNNNNGG	5 cut(s)	305, 679, 694, 796, 997
AgsI	TTSAA	7 cut(s)	99, 176, 530, 582, 626, 667, 900
AjnI	CCWGG	4 cut(s)	184, 600, 610, 691
AluBI	AGCT	6 cut(s)	11, 130, 637, 783, 1102, 1148
AluI	AGCT	6 cut(s)	11, 130, 637, 783, 1102, 1148
Alw21I	GWGCWC	1 cut(s)	1011
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	3 cut(s)	874, 912, 925
AlwNI	CAGNNNCTG	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	109
Aor51HI	AGCGCT	1 cut(s)	1018
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	5 cut(s)	89, 592, 845, 953, 1019
AseI	ATTAAT	1 cut(s)	446
Asp700I	GAANNNNTTC	2 cut(s)	538, 1043
Asp718I	GGTACC	1 cut(s)	786
AspLEI	GCGC	2 cut(s)	823, 1019
AspS9I	GGNCC	1 cut(s)	267
AsuHPI	GGTGA	4 cut(s)	19, 476, 788, 869
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	267
BaeI	ACNNNNGTAYC	2 cut(s)	636, 669
BamHI	GGATCC	1 cut(s)	917
BanI	GGYRCC	2 cut(s)	786, 820
BanII	GRGCYC	1 cut(s)	311
BbsI	GAAGAC	1 cut(s)	993
Bbv12I	GWGCWC	1 cut(s)	1011
BbvI	GCAGC	5 cut(s)	76, 604, 857, 965, 1006
BccI	CCATC	2 cut(s)	811, 854
BciT130I	CCWGG	4 cut(s)	186, 602, 612, 693
BclI	TGATCA	2 cut(s)	51, 291
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	3 cut(s)	329, 966, 1103
BfmI	CTRYAG	3 cut(s)	951, 1012, 1141
BfoI	RGCGCY	2 cut(s)	824, 1020
BfuAI	ACCTGC	2 cut(s)	189, 307
BisI	GCNGC	6 cut(s)	90, 593, 846, 954, 962, 1020
BlsI	GCNGC	6 cut(s)	91, 594, 847, 955, 963, 1021
Bme1390I	CCNGG	4 cut(s)	186, 602, 612, 693
Bme18I	GGWCC	1 cut(s)	267
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	5 cut(s)	269, 788, 822, 905, 919
BmrFI	CCNGG	4 cut(s)	186, 602, 612, 693
BmsI	GCATC	5 cut(s)	327, 364, 493, 515, 879
BpiI	GAAGAC	1 cut(s)	993
BpmI	CTGGAG	3 cut(s)	594, 770, 1019
Bsa29I	ATCGAT	1 cut(s)	1042
BsaHI	GRCGYC	1 cut(s)	821
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	692
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	5 cut(s)	305, 679, 694, 796, 997
Bse1I	ACTGG	1 cut(s)	946
Bse3DI	GCAATG	2 cut(s)	309, 956
BseBI	CCWGG	4 cut(s)	186, 602, 612, 693
BseCI	ATCGAT	1 cut(s)	1042
BseDI	CCNNGG	1 cut(s)	692
BseGI	GGATG	3 cut(s)	669, 822, 1082
BseLI	CCNNNNNNNGG	5 cut(s)	305, 679, 694, 796, 997
BseMI	GCAATG	2 cut(s)	309, 956
BseMII	CTCAG	3 cut(s)	252, 555, 858
BseNI	ACTGG	1 cut(s)	946
BseXI	GCAGC	5 cut(s)	76, 604, 857, 965, 1006
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	2 cut(s)	786, 820
BshVI	ATCGAT	1 cut(s)	1042
BsiHKAI	GWGCWC	1 cut(s)	1011
BsiHKCI	CYCGRG	1 cut(s)	109
BslFI	GGGAC	2 cut(s)	768, 877
BslI	CCNNNNNNNGG	5 cut(s)	305, 679, 694, 796, 997
BsmAI	GTCTC	1 cut(s)	207
BsmFI	GGGAC	2 cut(s)	768, 877
BsnI	GGCC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	311, 1011
Bsp143I	GATC	4 cut(s)	51, 291, 879, 917
BspACI	CCGC	1 cut(s)	962
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	3 cut(s)	253, 556, 859
BspDI	ATCGAT	1 cut(s)	1042
BspLI	GGNNCC	5 cut(s)	269, 788, 822, 905, 919
BspMAI	CTGCAG	1 cut(s)	955
BspMI	ACCTGC	2 cut(s)	189, 307
BspPI	GGATC	3 cut(s)	874, 912, 925
BspT107I	GGYRCC	2 cut(s)	786, 820
BspTNI	GGTCTC	1 cut(s)	207
BsrDI	GCAATG	2 cut(s)	309, 956
BsrI	ACTGG	1 cut(s)	946
BssECI	CCNNGG	1 cut(s)	692
BssMI	GATC	4 cut(s)	51, 291, 879, 917
BssNI	GRCGYC	1 cut(s)	821
Bst2UI	CCWGG	4 cut(s)	186, 602, 612, 693
Bst4CI	ACNGT	2 cut(s)	40, 1142
BstACI	GRCGYC	1 cut(s)	821
BstC8I	GCNNGC	1 cut(s)	1066
BstDEI	CTNAG	4 cut(s)	261, 564, 629, 867
BstF5I	GGATG	3 cut(s)	669, 822, 1082
BstH2I	RGCGCY	2 cut(s)	824, 1020
BstHHI	GCGC	2 cut(s)	823, 1019
BstKTI	GATC	4 cut(s)	54, 294, 882, 920
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	4 cut(s)	51, 291, 879, 917
BstMWI	GCNNNNNNNGC	2 cut(s)	829, 1154
BstNI	CCWGG	4 cut(s)	186, 602, 612, 693
BstSCI	CCNGG	4 cut(s)	184, 600, 610, 691
BstSFI	CTRYAG	3 cut(s)	951, 1012, 1141
BstV1I	GCAGC	5 cut(s)	76, 604, 857, 965, 1006
BstV2I	GAAGAC	1 cut(s)	993
BstX2I	RGATCY	2 cut(s)	879, 917
BstYI	RGATCY	2 cut(s)	879, 917
Bsu15I	ATCGAT	1 cut(s)	1042
BsuRI	GGCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	1042
BtsCI	GGATG	3 cut(s)	669, 822, 1082
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
BveI	ACCTGC	2 cut(s)	189, 307
Cac8I	GCNNGC	1 cut(s)	1066
CaiI	CAGNNNCTG	1 cut(s)	68
CfoI	GCGC	2 cut(s)	823, 1019
Cfr13I	GGNCC	1 cut(s)	267
ClaI	ATCGAT	1 cut(s)	1042
Csp6I	GTAC	2 cut(s)	325, 787
CviAII	CATG	5 cut(s)	218, 242, 734, 1071, 1178
CviQI	GTAC	2 cut(s)	325, 787
DdeI	CTNAG	4 cut(s)	261, 564, 629, 867
DinI	GGCGCC	1 cut(s)	822
DpnI	GATC	4 cut(s)	53, 293, 881, 919
DpnII	GATC	4 cut(s)	51, 291, 879, 917
DraIII	CACNNNGTG	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	311
Eco31I	GGTCTC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	267
Eco47III	AGCGCT	1 cut(s)	1018
Eco57I	CTGAAG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	109
EcoRII	CCWGG	4 cut(s)	184, 600, 610, 691
EcoT22I	ATGCAT	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	311
EgeI	GGCGCC	1 cut(s)	822
EheI	GGCGCC	1 cut(s)	822
FaeI	CATG	5 cut(s)	221, 245, 737, 1074, 1181
FalI	AAGNNNNNCTT	1 cut(s)	32
FaqI	GGGAC	2 cut(s)	768, 877
FatI	CATG	5 cut(s)	217, 241, 733, 1070, 1177
FauNDI	CATATG	2 cut(s)	460, 658
FbaI	TGATCA	2 cut(s)	51, 291
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	6 cut(s)	90, 593, 846, 954, 962, 1020
FokI	GGATG	3 cut(s)	656, 829, 1089
FriOI	GRGCYC	1 cut(s)	311
Fsp4HI	GCNGC	6 cut(s)	90, 593, 846, 954, 962, 1020
FspBI	CTAG	3 cut(s)	329, 966, 1103
GlaI	GCGC	2 cut(s)	822, 1018
GluI	GCNGC	6 cut(s)	90, 593, 846, 954, 962, 1020
GsuI	CTGGAG	3 cut(s)	594, 770, 1019
HaeII	RGCGCY	2 cut(s)	824, 1020
HaeIII	GGCC	1 cut(s)	143
HhaI	GCGC	2 cut(s)	823, 1019
Hin1I	GRCGYC	1 cut(s)	821
Hin1II	CATG	5 cut(s)	221, 245, 737, 1074, 1181
Hin6I	GCGC	2 cut(s)	821, 1017
HinP1I	GCGC	2 cut(s)	821, 1017
HindIII	AAGCTT	2 cut(s)	9, 635
HinfI	GANTC	6 cut(s)	4, 455, 896, 1039, 1044, 1125
HphI	GGTGA	4 cut(s)	19, 476, 788, 869
Hpy166II	GTNNAC	4 cut(s)	205, 267, 454, 1111
Hpy188I	TCNGA	2 cut(s)	118, 982
Hpy188III	TCNNGA	7 cut(s)	176, 279, 357, 548, 749, 998, 1048
Hpy8I	GTNNAC	4 cut(s)	205, 267, 454, 1111
HpyAV	CCTTC	7 cut(s)	65, 105, 133, 174, 528, 706, 848
HpyCH4III	ACNGT	2 cut(s)	40, 1142
HpyCH4IV	ACGT	1 cut(s)	1005
HpyCH4V	TGCA	9 cut(s)	302, 340, 377, 506, 721, 845, 953, 1068, 1157
HpyF10VI	GCNNNNNNNGC	2 cut(s)	829, 1154
HpyF3I	CTNAG	4 cut(s)	261, 564, 629, 867
HpySE526I	ACGT	1 cut(s)	1005
Hsp92I	GRCGYC	1 cut(s)	821
Hsp92II	CATG	5 cut(s)	221, 245, 737, 1074, 1181
HspAI	GCGC	2 cut(s)	821, 1017
KasI	GGCGCC	1 cut(s)	820
KpnI	GGTACC	1 cut(s)	790
Ksp22I	TGATCA	2 cut(s)	51, 291
Kzo9I	GATC	4 cut(s)	51, 291, 879, 917
LmnI	GCTCC	3 cut(s)	97, 281, 909
Lsp1109I	GCAGC	5 cut(s)	76, 604, 857, 965, 1006
LweI	GCATC	5 cut(s)	327, 364, 493, 515, 879
MaeI	CTAG	3 cut(s)	329, 966, 1103
MaeII	ACGT	1 cut(s)	1005
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	4 cut(s)	53, 293, 881, 919
MboI	GATC	4 cut(s)	51, 291, 879, 917
MboII	GAAGA	4 cut(s)	8, 164, 998, 1147
MflI	RGATCY	2 cut(s)	879, 917
MhlI	GDGCHC	2 cut(s)	311, 1011
MluCI	AATT	5 cut(s)	225, 443, 478, 873, 1160
Mly113I	GGCGCC	1 cut(s)	821
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	668
Mph1103I	ATGCAT	1 cut(s)	508
MroXI	GAANNNNTTC	2 cut(s)	538, 1043
MseI	TTAA	6 cut(s)	224, 416, 446, 705, 876, 1095
MslI	CAYNNNNRTG	3 cut(s)	392, 815, 1075
MspA1I	CMGCKG	1 cut(s)	130
MspR9I	CCNGG	4 cut(s)	186, 602, 612, 693
MvaI	CCWGG	4 cut(s)	186, 602, 612, 693
MwoI	GCNNNNNNNGC	2 cut(s)	829, 1154
NarI	GGCGCC	1 cut(s)	821
NdeI	CATATG	2 cut(s)	460, 658
NdeII	GATC	4 cut(s)	51, 291, 879, 917
NlaIII	CATG	5 cut(s)	221, 245, 737, 1074, 1181
NlaIV	GGNNCC	5 cut(s)	269, 788, 822, 905, 919
NmuCI	GTSAC	1 cut(s)	409
NsiI	ATGCAT	1 cut(s)	508
PaqCI	CACCTGC	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	1039
PdmI	GAANNNNTTC	2 cut(s)	538, 1043
PfeI	GAWTC	5 cut(s)	4, 896, 1039, 1044, 1125
PflMI	CCANNNNNTGG	1 cut(s)	679
PfoI	TCCNGGA	1 cut(s)	600
PkrI	GCNGC	6 cut(s)	91, 594, 847, 955, 963, 1021
PleI	GAGTC	1 cut(s)	449
PluTI	GGCGCC	1 cut(s)	824
PpsI	GAGTC	1 cut(s)	449
PshBI	ATTAAT	1 cut(s)	446
Psp6I	CCWGG	4 cut(s)	184, 600, 610, 691
PspGI	CCWGG	4 cut(s)	184, 600, 610, 691
PspN4I	GGNNCC	5 cut(s)	269, 788, 822, 905, 919
PspPI	GGNCC	1 cut(s)	267
PsrI	GAACNNNNNNTAC	2 cut(s)	995, 1027
PstI	CTGCAG	1 cut(s)	955
PstNI	CAGNNNCTG	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	879, 917
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	2 cut(s)	326, 788
RsaNI	GTAC	2 cut(s)	325, 787
RseI	CAYNNNNRTG	3 cut(s)	392, 815, 1075
SaqAI	TTAA	6 cut(s)	224, 416, 446, 705, 876, 1095
SatI	GCNGC	6 cut(s)	90, 593, 846, 954, 962, 1020
Sau3AI	GATC	4 cut(s)	51, 291, 879, 917
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	4 cut(s)	186, 602, 612, 693
SduI	GDGCHC	2 cut(s)	311, 1011
SfaNI	GCATC	5 cut(s)	327, 364, 493, 515, 879
SfcI	CTRYAG	3 cut(s)	951, 1012, 1141
SfoI	GGCGCC	1 cut(s)	822
SinI	GGWCC	1 cut(s)	267
SmiMI	CAYNNNNRTG	3 cut(s)	392, 815, 1075
Sse9I	AATT	5 cut(s)	225, 443, 478, 873, 1160
SsiI	CCGC	1 cut(s)	962
SspDI	GGCGCC	1 cut(s)	820
SspMI	CTAG	3 cut(s)	329, 966, 1103
StyD4I	CCNGG	4 cut(s)	184, 600, 610, 691
TaaI	ACNGT	2 cut(s)	40, 1142
TaiI	ACGT	1 cut(s)	1008
TaqI	TCGA	3 cut(s)	932, 1033, 1042
TasI	AATT	5 cut(s)	225, 443, 478, 873, 1160
TauI	GCSGC	1 cut(s)	964
TfiI	GAWTC	5 cut(s)	4, 896, 1039, 1044, 1125
Tru1I	TTAA	6 cut(s)	224, 416, 446, 705, 876, 1095
Tru9I	TTAA	6 cut(s)	224, 416, 446, 705, 876, 1095
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	5 cut(s)	89, 592, 845, 953, 1019
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	4 cut(s)	17, 376, 999, 1052
TspGWI	ACGGA	1 cut(s)	1137
TspRI	CASTG	1 cut(s)	69
Van91I	CCANNNNNTGG	1 cut(s)	679
VpaK11BI	GGWCC	1 cut(s)	267
VspI	ATTAAT	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	204
XmnI	GAANNNNTTC	2 cut(s)	538, 1043
XspI	CTAG	3 cut(s)	329, 966, 1103
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.