AT4G17570

GATA transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
9783782 .. 9787528
3747 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17570.1

Sequence Viewer

Length: 1533 bp
ATGGGGAAGCAAGGACCTTGCTACCACTGTGGAGTTACAAACACACCTTTGTGGAGAAATGGACCACCAGAGAAGCCGGTATTGTGCAATGCGTGTGGATCGCGTTGGAGGACAAAGGGAACACTTGTGAACTACACACCGCTTCATGCTCGTGCTGATGGTGATGAGAATGATGATCATCACAGGTTTCAAAGAATGAAGAGCATTTCTTTAGGCAATAAGAACAAAGAGATAAAGATGCTCAAGAGGAAAGCAATTCAAGAAAACATCATCATTAAAAGACCGGTCTTTGAATTCAGTTATGGTTTGAAGGCGGCTGTGATAGAGGAGGATGCTAGTAATAGATCGAGTTCCGGTTCGGCTGTATCAAACTCTGAGAGCTGTGCACAGTTTAGCAGTGCAGATGGGAGTCCATCTCAATCTAATGCGTGGGACACAACTGTTCCTTGCAAGAGGAGGACGTGTGTGGGCCGTCCTAAGTCCTCTTCTGTTGAAAAGCTCACAAAGGACCTTTACAATATTTTACAAGAGCAGCAATCGTCATGTCTCTCAGTTTCATCAGAGGAAGATCTTCTTTTTGAGAATGAAATGTCAATGGTCTCAGTTGAGATTGGACATGGGAGTGTTCTGATGAAGAATCCCCACTCGTTTGCTCGGGAAGAGGAGTCTGAAGCCAGCTCACTCTCTTCGATTGAGAACAAGTCCTCCATCAGTGACGCATACTCACATTCCGTGAAGCGTGTTGAGATTGGAGCAGTGAGAGGTTCATATTATGGTGGACAAACAATAAAGCAAGAACAATTCAAGAGAACCAAGTCTCAAACTGAAAGAGTGCATGTCCTGGGGAGTCATGGTTCACCACTATGTAGCATAGATTTGAAGGATGTTTTCAACTTTGATGAGTTCATAGAACAATTCACAGAGGAAGAACAGAAGAAACTGATGAACTTGCTTCCTCAGATTGACTCTGATGACCTTCCTCATAGCCTCAGAATGATGTTTGAAAGTGCTCAGTTCAAGGACAACTTCTCTTTGTTTCAGCAGCTCATTGCTGATGGTGTCTTTGATGTGTCTTCTTCCTCGGGGGCAAAACTCGAAGAAATCAGGACTTTTAAGAAGCTTGCTTTGACAGATTTTAACAAATCTCGTTTGGTGGAAAGCTATAACCTCCTCAAGGAACGCGAAAAAGGGACCGGAGATTCTGTTACTACAACTTCAAAAAGCTCAATCCCAAATGTACCTAAAAATATTGTAACCATTAAGAGGCGCTATGAAAACCAAATCCAAGTAAAGTCAGAGTCAAGGGGGCTAATGAGGAGCCCCAAAAGGGTGATGAAGATGAAAGCAAGCCATGAGACAGAGAACAATGTCTCATGCTTCAGACCAAGAAGCTTGGCTTCTGTGTTTGCACAAGAAGGTGGCTCTGCAGTGTTTAGCTATGAAGGTAATTGCAGTTCTGATCAAGATCTCCTTCTTCTGGACTTGCCGTCAAACGGGTCATTTCCTCAAGCAGAGCTACTTCACCAACTCTGA

Protein Analysis

510

Amino Acids

56.97

Weight (kDa)

7.56

Isoelectric Point (pI)

60.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 7 - 41 4.1e-14 GATA zinc finger
ASXH PF13919 269 - 367 8.1e-11 Asx homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 103, 1182
AciI CCGC 2 cut(s) 140, 314
AclWI GGATC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 2 cut(s) 690, 1363
AfaI GTAC 1 cut(s) 1239
AfiI CCNNNNNNNGG 5 cut(s) 1174, 1263, 1327, 1477, 1493
AflIII ACRYGT 1 cut(s) 461
AgeI ACCGGT 1 cut(s) 283
AhdI GACNNNNNGTC 1 cut(s) 1486
AjiI CACGTC 1 cut(s) 462
AjnI CCWGG 1 cut(s) 840
AleI CACNNNNGTG 1 cut(s) 49
AloI GAACNNNNNNTCC 4 cut(s) 689, 721, 838, 870
Alw21I GWGCWC 2 cut(s) 388, 1012
Alw26I GTCTC 5 cut(s) 551, 604, 822, 1349, 1375
Alw44I GTGCAC 1 cut(s) 384
AlwI GGATC 1 cut(s) 106
Ama87I CYCGRG 2 cut(s) 654, 1081
AoxI GGCC 1 cut(s) 469
ApaLI GTGCAC 1 cut(s) 384
ApeKI GCWGC 2 cut(s) 532, 1042
ApoI RAATTY 1 cut(s) 293
AsiGI ACCGGT 1 cut(s) 283
Asp700I GAANNNNTTC 1 cut(s) 570
AspLEI GCGC 1 cut(s) 1269
AspS9I GGNCC 5 cut(s) 14, 62, 469, 508, 1191
AsuHPI GGTGA 4 cut(s) 173, 849, 1342, 1514
AvaI CYCGRG 2 cut(s) 654, 1081
AvaII GGWCC 4 cut(s) 14, 62, 508, 1191
BaeGI GKGCMC 1 cut(s) 388
BanII GRGCYC 1 cut(s) 1322
BauI CACGAG 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 1065
Bbv12I GWGCWC 2 cut(s) 388, 1012
BbvI GCAGC 2 cut(s) 544, 1054
BccI CCATC 5 cut(s) 152, 398, 421, 716, 1049
BceAI ACGGC 2 cut(s) 456, 1471
BciT130I CCWGG 1 cut(s) 842
BclI TGATCA 2 cut(s) 175, 1459
BcoDI GTCTC 5 cut(s) 551, 604, 822, 1349, 1375
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 1425
BfoI RGCGCY 1 cut(s) 1270
BglII AGATCT 2 cut(s) 568, 1465
BisI GCNGC 3 cut(s) 315, 533, 1043
BlsI GCNGC 3 cut(s) 316, 534, 1044
Bme1390I CCNGG 1 cut(s) 842
Bme18I GGWCC 4 cut(s) 14, 62, 508, 1191
BmeRI GACNNNNNGTC 1 cut(s) 1486
BmeT110I CYCGRG 2 cut(s) 654, 1081
BmgBI CACGTC 1 cut(s) 462
BmgT120I GGNCC 5 cut(s) 14, 62, 469, 508, 1191
BmiI GGNNCC 2 cut(s) 1192, 1319
BmrFI CCNGG 1 cut(s) 842
BmsI GCATC 2 cut(s) 228, 322
BpiI GAAGAC 1 cut(s) 1065
BplI GAGNNNNNCTC 2 cut(s) 400, 432
BpuEI CTTGAG 3 cut(s) 227, 1157, 1491
BsaBI GATNNNNATC 2 cut(s) 177, 1464
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 2 cut(s) 841, 1080
BsaWI WCCGGW 3 cut(s) 283, 353, 1193
BsaXI ACNNNNNCTCC 8 cut(s) 448, 478, 689, 719, 838, 868, 1188, 1218
Bsc4I CCNNNNNNNGG 5 cut(s) 1174, 1263, 1327, 1477, 1493
Bse118I RCCGGY 2 cut(s) 76, 283
Bse3DI GCAATG 2 cut(s) 94, 1047
Bse8I GATNNNNATC 2 cut(s) 177, 1464
BseBI CCWGG 1 cut(s) 842
BseDI CCNNGG 2 cut(s) 841, 1080
BseGI GGATG 2 cut(s) 337, 889
BseJI GATNNNNATC 2 cut(s) 177, 1464
BseLI CCNNNNNNNGG 5 cut(s) 1174, 1263, 1327, 1477, 1493
BseMI GCAATG 2 cut(s) 94, 1047
BseMII CTCAG 6 cut(s) 366, 564, 615, 971, 1003, 1025
BseRI GAGGAG 5 cut(s) 341, 469, 677, 1160, 1330
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 2 cut(s) 544, 1054
BsgI GTGCAG 1 cut(s) 420
Bsh1236I CGCG 2 cut(s) 103, 1182
BshFI GGCC 1 cut(s) 471
BshTI ACCGGT 1 cut(s) 283
BsiHKAI GWGCWC 2 cut(s) 388, 1012
BsiHKCI CYCGRG 2 cut(s) 654, 1081
BsiSI CCGG 4 cut(s) 77, 284, 354, 1194
BslFI GGGAC 2 cut(s) 446, 1204
BslI CCNNNNNNNGG 5 cut(s) 1174, 1263, 1327, 1477, 1493
BsmAI GTCTC 5 cut(s) 551, 604, 822, 1349, 1375
BsmFI GGGAC 2 cut(s) 446, 1204
BsnI GGCC 1 cut(s) 471
Bso31I GGTCTC 1 cut(s) 604
BsoBI CYCGRG 2 cut(s) 654, 1081
Bsp1286I GDGCHC 3 cut(s) 388, 1012, 1322
Bsp143I GATC 6 cut(s) 98, 175, 344, 568, 1459, 1465
BspACI CCGC 2 cut(s) 140, 314
BspANI GGCC 1 cut(s) 471
BspCNI CTCAG 6 cut(s) 367, 563, 614, 970, 1002, 1024
BspFNI CGCG 2 cut(s) 103, 1182
BspLI GGNNCC 2 cut(s) 1192, 1319
BspMAI CTGCAG 1 cut(s) 1429
BspPI GGATC 1 cut(s) 106
BspQI GCTCTTC 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 604
BsrDI GCAATG 2 cut(s) 94, 1047
BsrFI RCCGGY 2 cut(s) 76, 283
BssAI RCCGGY 2 cut(s) 76, 283
BssECI CCNNGG 2 cut(s) 841, 1080
BssMI GATC 6 cut(s) 98, 175, 344, 568, 1459, 1465
BssSI CACGAG 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 842
Bst4CI ACNGT 3 cut(s) 29, 390, 442
Bst6I CTCTTC 4 cut(s) 194, 490, 654, 691
BstC8I GCNNGC 3 cut(s) 676, 1122, 1348
BstDEI CTNAG 7 cut(s) 375, 477, 550, 601, 957, 989, 1011
BstENI CCTNNNNNAGG 1 cut(s) 1172
BstF5I GGATG 2 cut(s) 337, 889
BstFNI CGCG 2 cut(s) 103, 1182
BstH2I RGCGCY 1 cut(s) 1270
BstHHI GCGC 1 cut(s) 1269
BstKTI GATC 6 cut(s) 101, 178, 347, 571, 1462, 1468
BstMAI GTCTC 5 cut(s) 551, 604, 822, 1349, 1375
BstMBI GATC 6 cut(s) 98, 175, 344, 568, 1459, 1465
BstNI CCWGG 1 cut(s) 842
BstNSI RCATGY 1 cut(s) 839
BstSCI CCNGG 1 cut(s) 840
BstSFI CTRYAG 1 cut(s) 1425
BstSLI GKGCMC 1 cut(s) 388
BstUI CGCG 2 cut(s) 103, 1182
BstV1I GCAGC 2 cut(s) 544, 1054
BstV2I GAAGAC 1 cut(s) 1065
BstX2I RGATCY 2 cut(s) 568, 1465
BstYI RGATCY 2 cut(s) 568, 1465
BsuRI GGCC 1 cut(s) 471
BtrI CACGTC 1 cut(s) 462
BtsCI GGATG 2 cut(s) 337, 889
BtsI GCAGTG 3 cut(s) 403, 762, 1434
BtsIMutI CAGTG 5 cut(s) 25, 403, 718, 762, 1434
Cac8I GCNNGC 3 cut(s) 676, 1122, 1348
CfoI GCGC 1 cut(s) 1269
Cfr10I RCCGGY 2 cut(s) 76, 283
Cfr13I GGNCC 5 cut(s) 14, 62, 469, 508, 1191
CseI GACGC 1 cut(s) 725
Csp6I GTAC 1 cut(s) 1238
CspAI ACCGGT 1 cut(s) 283
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 7 cut(s) 146, 543, 617, 836, 851, 1352, 1374
CviQI GTAC 1 cut(s) 1238
DdeI CTNAG 7 cut(s) 375, 477, 550, 601, 957, 989, 1011
DpnI GATC 6 cut(s) 100, 177, 346, 570, 1461, 1467
DpnII GATC 6 cut(s) 98, 175, 344, 568, 1459, 1465
DriI GACNNNNNGTC 1 cut(s) 1486
Eam1104I CTCTTC 4 cut(s) 194, 490, 654, 691
Eam1105I GACNNNNNGTC 1 cut(s) 1486
EarI CTCTTC 4 cut(s) 194, 490, 654, 691
Eco24I GRGCYC 1 cut(s) 1322
Eco31I GGTCTC 1 cut(s) 604
Eco47I GGWCC 4 cut(s) 14, 62, 508, 1191
Eco57I CTGAAG 2 cut(s) 690, 1363
Eco88I CYCGRG 2 cut(s) 654, 1081
EcoNI CCTNNNNNAGG 1 cut(s) 1172
EcoO109I RGGNCCY 2 cut(s) 14, 508
EcoRI GAATTC 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 840
EcoT38I GRGCYC 1 cut(s) 1322
FaeI CATG 7 cut(s) 149, 546, 620, 839, 854, 1355, 1377
FalI AAGNNNNNCTT 8 cut(s) 558, 590, 1010, 1042, 1381, 1413, 1455, 1487
FaqI GGGAC 2 cut(s) 446, 1204
FatI CATG 7 cut(s) 145, 542, 616, 835, 850, 1351, 1373
FbaI TGATCA 2 cut(s) 175, 1459
Fnu4HI GCNGC 3 cut(s) 315, 533, 1043
FokI GGATG 2 cut(s) 344, 896
FriOI GRGCYC 1 cut(s) 1322
Fsp4HI GCNGC 3 cut(s) 315, 533, 1043
FspBI CTAG 1 cut(s) 336
GlaI GCGC 1 cut(s) 1268
GluI GCNGC 3 cut(s) 315, 533, 1043
HaeII RGCGCY 1 cut(s) 1270
HaeIII GGCC 1 cut(s) 471
HapII CCGG 4 cut(s) 77, 284, 354, 1194
HgaI GACGC 1 cut(s) 725
HhaI GCGC 1 cut(s) 1269
Hin1II CATG 7 cut(s) 149, 546, 620, 839, 854, 1355, 1377
Hin6I GCGC 1 cut(s) 1267
HinP1I GCGC 1 cut(s) 1267
HindIII AAGCTT 2 cut(s) 1118, 1390
HinfI GANTC 7 cut(s) 409, 637, 665, 847, 965, 1199, 1298
HpaII CCGG 4 cut(s) 77, 284, 354, 1194
HphI GGTGA 4 cut(s) 173, 849, 1342, 1514
Hpy166II GTNNAC 4 cut(s) 130, 386, 779, 857
Hpy188III TCNNGA 7 cut(s) 244, 260, 656, 805, 1105, 1463, 1478
Hpy8I GTNNAC 4 cut(s) 130, 386, 779, 857
HpyAV CCTTC 6 cut(s) 304, 874, 986, 1409, 1436, 1481
HpyCH4III ACNGT 3 cut(s) 29, 390, 442
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 8 cut(s) 87, 386, 401, 450, 835, 1409, 1427, 1452
HpyF3I CTNAG 7 cut(s) 375, 477, 550, 601, 957, 989, 1011
HpySE526I ACGT 1 cut(s) 461
Hsp92II CATG 7 cut(s) 149, 546, 620, 839, 854, 1355, 1377
HspAI GCGC 1 cut(s) 1267
Ksp22I TGATCA 2 cut(s) 175, 1459
Kzo9I GATC 6 cut(s) 98, 175, 344, 568, 1459, 1465
LguI GCTCTTC 1 cut(s) 194
LmnI GCTCC 2 cut(s) 752, 1317
Lsp1109I GCAGC 2 cut(s) 544, 1054
LweI GCATC 2 cut(s) 228, 322
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 4 cut(s) 34, 713, 1204, 1252
MalI GATC 6 cut(s) 100, 177, 346, 570, 1461, 1467
MboI GATC 6 cut(s) 98, 175, 344, 568, 1459, 1465
MflI RGATCY 2 cut(s) 568, 1465
MhlI GDGCHC 3 cut(s) 388, 1012, 1322
MluCI AATT 5 cut(s) 255, 293, 800, 914, 1447
MlyI GAGTC 5 cut(s) 418, 674, 856, 959, 1307
MmeI TCCRAC 1 cut(s) 86
MroXI GAANNNNTTC 1 cut(s) 570
MseI TTAA 4 cut(s) 276, 1113, 1137, 1260
MslI CAYNNNNRTG 4 cut(s) 49, 150, 621, 862
MspI CCGG 4 cut(s) 77, 284, 354, 1194
MspR9I CCNGG 1 cut(s) 842
MvaI CCWGG 1 cut(s) 842
MvnI CGCG 2 cut(s) 103, 1182
NdeII GATC 6 cut(s) 98, 175, 344, 568, 1459, 1465
NlaIII CATG 7 cut(s) 149, 546, 620, 839, 854, 1355, 1377
NlaIV GGNNCC 2 cut(s) 1192, 1319
NmuCI GTSAC 1 cut(s) 713
NspI RCATGY 1 cut(s) 839
OliI CACNNNNGTG 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 194
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 2 cut(s) 637, 1199
PinAI ACCGGT 1 cut(s) 283
PkrI GCNGC 3 cut(s) 316, 534, 1044
PleI GAGTC 5 cut(s) 417, 673, 855, 959, 1306
PpsI GAGTC 5 cut(s) 417, 673, 855, 959, 1306
PpuMI RGGWCCY 2 cut(s) 14, 508
Psp5II RGGWCCY 2 cut(s) 14, 508
Psp6I CCWGG 1 cut(s) 840
PspGI CCWGG 1 cut(s) 840
PspN4I GGNNCC 2 cut(s) 1192, 1319
PspPI GGNCC 5 cut(s) 14, 62, 469, 508, 1191
PspPPI RGGWCCY 2 cut(s) 14, 508
PsrI GAACNNNNNNTAC 2 cut(s) 1438, 1470
PstI CTGCAG 1 cut(s) 1429
PsuI RGATCY 2 cut(s) 568, 1465
RsaI GTAC 1 cut(s) 1239
RsaNI GTAC 1 cut(s) 1238
RseI CAYNNNNRTG 4 cut(s) 49, 150, 621, 862
SapI GCTCTTC 1 cut(s) 194
SaqAI TTAA 4 cut(s) 276, 1113, 1137, 1260
SatI GCNGC 3 cut(s) 315, 533, 1043
Sau3AI GATC 6 cut(s) 98, 175, 344, 568, 1459, 1465
Sau96I GGNCC 5 cut(s) 14, 62, 469, 508, 1191
SchI GAGTC 5 cut(s) 418, 674, 856, 959, 1307
ScrFI CCNGG 1 cut(s) 842
SduI GDGCHC 3 cut(s) 388, 1012, 1322
SfaNI GCATC 2 cut(s) 228, 322
SfcI CTRYAG 1 cut(s) 1425
SinI GGWCC 4 cut(s) 14, 62, 508, 1191
SmiMI CAYNNNNRTG 4 cut(s) 49, 150, 621, 862
SmlI CTYRAG 3 cut(s) 242, 1172, 1506
SmoI CTYRAG 3 cut(s) 242, 1172, 1506
Sse9I AATT 5 cut(s) 255, 293, 800, 914, 1447
SsiI CCGC 2 cut(s) 140, 314
SspI AATATT 2 cut(s) 520, 1249
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 840
TaaI ACNGT 3 cut(s) 29, 390, 442
TaiI ACGT 1 cut(s) 464
TaqI TCGA 3 cut(s) 347, 689, 1095
TasI AATT 5 cut(s) 255, 293, 800, 914, 1447
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 2 cut(s) 637, 1199
Tru1I TTAA 4 cut(s) 276, 1113, 1137, 1260
Tru9I TTAA 4 cut(s) 276, 1113, 1137, 1260
TscAI CASTG 5 cut(s) 32, 403, 718, 762, 1434
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 2 cut(s) 532, 1042
Tsp45I GTSAC 1 cut(s) 713
TspGWI ACGGA 1 cut(s) 721
TspRI CASTG 5 cut(s) 32, 403, 718, 762, 1434
VneI GTGCAC 1 cut(s) 384
VpaK11BI GGWCC 4 cut(s) 14, 62, 508, 1191
XagI CCTNNNNNAGG 1 cut(s) 1172
XapI RAATTY 1 cut(s) 293
XceI RCATGY 1 cut(s) 839
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.