Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0007896

Physical Location & Seq

Genomic Coordinates Reverse (-)

6505494 .. 6511632

Gene Structure 6139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1048100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ATGGGCAAGCAAGGACCTTGCTATCACTGTGGAGTCACAAGCACTCCTCTTTGGCGCAATGGACCACCCGACAAGCCAGTACTTTGCAATGCATGTGGATCTCGATGGAGGACTAAGGGAACACTAGTAAATTACACTCCTCTACACGCTCGAGCAGAACCTGATGATTTTGAAGATCACAGAGTTTCTAGGGTGAAGAGCATATCTGTAAACAAAAGCAAAGAAATAAAACTGGTTAAAAGAAAGCAGAATCCTGAGAGTATGGTGATTGGAGGAGTTAATTCTGATTATTCCCATGGTTTCCGAAAGATAATTGAAGAGGATAAAAGTAATAGATCCAGTTCTGGGTCTGCCGTGTCTAACTCTGAGAGCTGCGCACAATTTGGCAGTGGAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCGATGGTATGGGACTCAATGGTACCTTCTAGGAAAAGGACCTGTATAGGCCGTCTTAAGCCATCTCCTGTGGAAAGGCTCACAAAGGATCTGTATACTATTTTACATGAACAACAGTCTTCCTGCTTCTCCGGGTCTTCTGAAGAGGATCTGCTTTTTGAGAGTGAAACGCCAATGGTTTCTGTTGAGATAGGCCATGGAAGTGTTCTGATTAGGCATCCCAACTCAATAGCACGAGAAGAGGAATCTGAAGCTAGCTCGATCTCGGTTGATAATAAACAGTGCCTTGCAAATGAGGTTTATTCCCGTTCTGCAACCCTTTTTGTACATAATAATAACAAGGGTGTCAATATGGCCAGTACTGTATCTGGAAGGATGAACAACGTTGTAGGAGAAGGAATGCAACATGAGCCACTGAAAAGGGATAAGTCTCAACTTGACAACTTCCAAATCCTGGGAAACCATAATTCACCACTGCGTCATGTAGATTTAAACGATATTTTAAATTTTGAAGAGTTTACGAGGCAATTGACAAATGAGGAACAACAGCAATTACTGAAGCATCTACCTGCAGTTGATGTTGTTAAATTTCCTTATAGCCTCAAAAGCATGTTTGATAGCCCTCAATTCAGAGAGAACTTGACTTCCTTTCAGCAATTGCTAGCAGAAGGCGTCTTTGATATCTCCTTCCCGGGGGTAAAAACCGAAGACTGTAAGACTTTAAAAAGGCTTGCATTGTCCAATTCTCCAAAATCTAAATGGGTTGAGCGCTATCATCTTCTCAAGAAATGTAAAACTAGCTCTGGAAAGTCTGTTGTTTCTGGGCTTAACATGGCATCTAGTAATCTTCGACATGTCAAGAGACTGTGGGACAACGAGACTCATAGTTTCCCAGATGTAAAGATTATGAAAAGCCCCAAAAGGATAATTATGAAGGGTAGCTATGAAAACAAGGATCCCATGGACTATGATGGAGGTTCTTGCTTTAGTCCAAAAAGCCTATTTGCGTTGCCTACTGATGGGGGTTCTTTCCTAATGGATTCTATGAATTTTGTTGATGAGAGTTCTGACCAGGATCTCCTCCTTGATGTTCCGTCCAATGGCTCTTTTGCCCAAGCAGAGCTCCTTCACCCAGCCATGAGTTTTGGTGCCCCACAGGCAAGCACTAGTAGTAGCTCGATATACCCACATGTACTCCATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASXH GATA RPN13_C

Protein Analysis

543

Amino Acids

60.19

Weight (kDa)

7.01

Isoelectric Point (pI)

54.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	7 - 41	6.6e-14	GATA zinc finger
ASXH	PF13919	286 - 368	2.9e-10	Asx homology domain
RPN13_C	PF16550	295 - 367	1.8e-08	UCH-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17570 AT4G17570 AT4G17570 AT5G47140
fragaria_vesca	FvH4_5g20240 FvH4_5g20240
malus_domestica	MD04G1052000.v1.1 MD06G1048100.v1.1
prunus_persica	Prupe.5G058300_v2.0.a1 Prupe.5G058300_v2.0.a1 Prupe.5G058300_v2.0.a1
pyrus_communis	pycom04g04570 pycom06g04110
rosa_chinensis	RchiOBHm_Chr7g0205311
rosa_laevigata	RLG00000003389
rosa_multiflora	Rmu_sc0001072.1_g000024 Rmu_ssc0000004.1_g000026
rosa_roxburghii	Rroxscaffold_3G00252480
rosa_rugosa	Rorug07G0089600
rosa_samantha	Rh7AG220300 Rh7BG216400 Rh7CG233100 Rh7DG227200
rosa_wichuraiana	Rw7G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	376
Acc36I	ACCTGC	1 cut(s)	1000
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	2 cut(s)	445, 1571
AccB7I	CCANNNNNTGG	1 cut(s)	877
AccI	GTMKAC	1 cut(s)	518
AclI	AACGTT	1 cut(s)	807
AclWI	GGATC	7 cut(s)	106, 330, 519, 579, 1373, 1386, 1506
AcoI	YGGCCR	1 cut(s)	777
AcsI	RAATTY	3 cut(s)	928, 1010, 1471
AcuI	CTGAAG	3 cut(s)	585, 693, 1001
AcyI	GRCGYC	1 cut(s)	1095
AfaI	GTAC	5 cut(s)	81, 447, 750, 784, 1617
AfeI	AGCGCT	1 cut(s)	1193
AfiI	CCNNNNNNNGG	5 cut(s)	345, 877, 1116, 1442, 1523
AflII	CTTAAG	1 cut(s)	479
AflIII	ACRYGT	2 cut(s)	1276, 1612
AgsI	TTSAA	3 cut(s)	173, 317, 935
AhlI	ACTAGT	2 cut(s)	124, 1589
AjnI	CCWGG	2 cut(s)	876, 1494
AloI	GAACNNNNNNTCC	2 cut(s)	1052, 1084
AluBI	AGCT	7 cut(s)	372, 677, 681, 1224, 1365, 1546, 1599
AluI	AGCT	7 cut(s)	372, 677, 681, 1224, 1365, 1546, 1599
Alw21I	GWGCWC	1 cut(s)	1548
Alw26I	GTCTC	3 cut(s)	858, 1279, 1295
AlwI	GGATC	7 cut(s)	106, 330, 519, 579, 1373, 1386, 1506
AlwNI	CAGNNNCTG	2 cut(s)	161, 416
Ama87I	CYCGRG	2 cut(s)	150, 1114
Aor51HI	AGCGCT	1 cut(s)	1193
AoxI	GGCC	3 cut(s)	472, 616, 777
ApeKI	GCWGC	1 cut(s)	372
ApoI	RAATTY	3 cut(s)	928, 1010, 1471
Asp718I	GGTACC	1 cut(s)	445
AspLEI	GCGC	3 cut(s)	57, 377, 1194
AspS9I	GGNCC	4 cut(s)	14, 62, 413, 462
AsuC2I	CCSGG	3 cut(s)	556, 1115, 1116
AsuHPI	GGTGA	4 cut(s)	205, 277, 885, 1544
AsuNHI	GCTAGC	2 cut(s)	677, 1084
AvaI	CYCGRG	2 cut(s)	150, 1114
AvaII	GGWCC	4 cut(s)	14, 62, 413, 462
BaeGI	GKGCMC	1 cut(s)	1576
BalI	TGGCCA	1 cut(s)	779
BamHI	GGATCC	1 cut(s)	1378
BanI	GGYRCC	2 cut(s)	445, 1571
BanII	GRGCYC	1 cut(s)	1548
BauI	CACGAG	1 cut(s)	657
BbsI	GAAGAC	3 cut(s)	534, 552, 1137
Bbv12I	GWGCWC	1 cut(s)	1548
BbvI	GCAGC	1 cut(s)	359
BccI	CCATC	5 cut(s)	99, 421, 493, 1388, 1436
BceAI	ACGGC	2 cut(s)	338, 459
BciT130I	CCWGG	2 cut(s)	878, 1496
BcnI	CCSGG	3 cut(s)	556, 1115, 1116
BcoDI	GTCTC	3 cut(s)	858, 1279, 1295
BcuI	ACTAGT	2 cut(s)	124, 1589
BfaI	CTAG	9 cut(s)	125, 189, 399, 453, 678, 1085, 1221, 1263, 1590
BfmI	CTRYAG	1 cut(s)	993
BfoI	RGCGCY	1 cut(s)	1195
BfrI	CTTAAG	1 cut(s)	479
BfuAI	ACCTGC	1 cut(s)	1000
BglI	GCCNNNNNGGC	1 cut(s)	1580
BisI	GCNGC	1 cut(s)	373
BlsI	GCNGC	1 cut(s)	374
BmcAI	AGTACT	2 cut(s)	81, 784
Bme1390I	CCNGG	5 cut(s)	556, 878, 1115, 1116, 1496
Bme18I	GGWCC	4 cut(s)	14, 62, 413, 462
BmeT110I	CYCGRG	2 cut(s)	150, 1114
BmgT120I	GGNCC	4 cut(s)	14, 62, 413, 462
BmiI	GGNNCC	3 cut(s)	447, 1380, 1573
BmrFI	CCNGG	5 cut(s)	556, 878, 1115, 1116, 1496
BmsI	GCATC	4 cut(s)	385, 649, 994, 1268
BmtI	GCTAGC	2 cut(s)	681, 1088
BpiI	GAAGAC	3 cut(s)	534, 552, 1137
BpuEI	CTTGAG	1 cut(s)	1190
BpuMI	CCSGG	3 cut(s)	556, 1115, 1116
BsaHI	GRCGYC	1 cut(s)	1095
BsaJI	CCNNGG	6 cut(s)	295, 619, 877, 1114, 1115, 1383
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 58, 1602
Bsc4I	CCNNNNNNNGG	5 cut(s)	345, 877, 1116, 1442, 1523
Bse1I	ACTGG	4 cut(s)	77, 237, 339, 780
Bse3DI	GCAATG	2 cut(s)	64, 94
BseBI	CCWGG	2 cut(s)	878, 1496
BseDI	CCNNGG	6 cut(s)	295, 619, 877, 1114, 1115, 1383
BseGI	GGATG	3 cut(s)	640, 804, 1621
BseLI	CCNNNNNNNGG	5 cut(s)	345, 877, 1116, 1442, 1523
BseMI	GCAATG	2 cut(s)	64, 94
BseMII	CTCAG	3 cut(s)	246, 357, 434
BseNI	ACTGG	4 cut(s)	77, 237, 339, 780
BseRI	GAGGAG	4 cut(s)	36, 129, 288, 1493
BseSI	GKGCMC	1 cut(s)	1576
BseXI	GCAGC	1 cut(s)	359
BseYI	CCCAGC	1 cut(s)	1555
BshFI	GGCC	3 cut(s)	474, 618, 779
BshNI	GGYRCC	2 cut(s)	445, 1571
BsiHKAI	GWGCWC	1 cut(s)	1548
BsiHKCI	CYCGRG	2 cut(s)	150, 1114
BsiSI	CCGG	2 cut(s)	555, 1115
BslFI	GGGAC	2 cut(s)	449, 1307
BslI	CCNNNNNNNGG	5 cut(s)	345, 877, 1116, 1442, 1523
BsmAI	GTCTC	3 cut(s)	858, 1279, 1295
BsmFI	GGGAC	2 cut(s)	449, 1307
BsmI	GAATGC	1 cut(s)	828
BsnI	GGCC	3 cut(s)	474, 618, 779
BsoBI	CYCGRG	2 cut(s)	150, 1114
Bsp1286I	GDGCHC	2 cut(s)	1548, 1576
Bsp1407I	TGTACA	1 cut(s)	748
Bsp143I	GATC	8 cut(s)	98, 175, 335, 511, 571, 684, 1378, 1498
Bsp19I	CCATGG	3 cut(s)	295, 619, 1383
BspANI	GGCC	3 cut(s)	474, 618, 779
BspCNI	CTCAG	3 cut(s)	247, 358, 433
BspLI	GGNNCC	3 cut(s)	447, 1380, 1573
BspMAI	CTGCAG	1 cut(s)	997
BspMI	ACCTGC	1 cut(s)	1000
BspOI	GCTAGC	2 cut(s)	681, 1088
BspPI	GGATC	7 cut(s)	106, 330, 519, 579, 1373, 1386, 1506
BspQI	GCTCTTC	1 cut(s)	191
BspT107I	GGYRCC	2 cut(s)	445, 1571
BspTI	CTTAAG	1 cut(s)	479
BsrDI	GCAATG	2 cut(s)	64, 94
BsrGI	TGTACA	1 cut(s)	748
BsrI	ACTGG	4 cut(s)	77, 237, 339, 780
BssECI	CCNNGG	6 cut(s)	295, 619, 877, 1114, 1115, 1383
BssMI	GATC	8 cut(s)	98, 175, 335, 511, 571, 684, 1378, 1498
BssNAI	GTATAC	1 cut(s)	519
BssNI	GRCGYC	1 cut(s)	1095
BssSI	CACGAG	1 cut(s)	657
BssT1I	CCWWGG	3 cut(s)	295, 619, 1383
Bst1107I	GTATAC	1 cut(s)	519
Bst2BI	CACGAG	1 cut(s)	657
Bst2UI	CCWGG	2 cut(s)	878, 1496
Bst4CI	ACNGT	6 cut(s)	29, 540, 705, 787, 1136, 1290
Bst6I	CTCTTC	5 cut(s)	191, 312, 561, 657, 930
BstACI	GRCGYC	1 cut(s)	1095
BstAFI	CTTAAG	1 cut(s)	479
BstAUI	TGTACA	1 cut(s)	748
BstC8I	GCNNGC	5 cut(s)	8, 679, 1086, 1155, 1585
BstDEI	CTNAG	4 cut(s)	114, 255, 366, 420
BstDSI	CCRYGG	3 cut(s)	295, 619, 1383
BstF5I	GGATG	3 cut(s)	640, 804, 1621
BstH2I	RGCGCY	1 cut(s)	1195
BstHHI	GCGC	3 cut(s)	57, 377, 1194
BstKTI	GATC	8 cut(s)	101, 178, 338, 514, 574, 687, 1381, 1501
BstMAI	GTCTC	3 cut(s)	858, 1279, 1295
BstMBI	GATC	8 cut(s)	98, 175, 335, 511, 571, 684, 1378, 1498
BstMWI	GCNNNNNNNGC	3 cut(s)	832, 1029, 1580
BstNI	CCWGG	2 cut(s)	878, 1496
BstNSI	RCATGY	4 cut(s)	96, 1036, 1280, 1616
BstSCI	CCNGG	5 cut(s)	554, 876, 1113, 1114, 1494
BstSFI	CTRYAG	1 cut(s)	993
BstSLI	GKGCMC	1 cut(s)	1576
BstV1I	GCAGC	1 cut(s)	359
BstV2I	GAAGAC	3 cut(s)	534, 552, 1137
BstX2I	RGATCY	6 cut(s)	98, 335, 511, 571, 1378, 1498
BstYI	RGATCY	6 cut(s)	98, 335, 511, 571, 1378, 1498
BstZ17I	GTATAC	1 cut(s)	519
BsuRI	GGCC	3 cut(s)	474, 618, 779
BtgI	CCRYGG	3 cut(s)	295, 619, 1383
BtsCI	GGATG	3 cut(s)	640, 804, 1621
BtsI	GCAGTG	2 cut(s)	394, 896
BtsIMutI	CAGTG	5 cut(s)	25, 394, 710, 836, 896
BveI	ACCTGC	1 cut(s)	1000
Cac8I	GCNNGC	5 cut(s)	8, 679, 1086, 1155, 1585
CaiI	CAGNNNCTG	2 cut(s)	161, 416
CfoI	GCGC	3 cut(s)	57, 377, 1194
Cfr13I	GGNCC	4 cut(s)	14, 62, 413, 462
Cfr9I	CCCGGG	1 cut(s)	1114
CseI	GACGC	2 cut(s)	890, 1084
Csp6I	GTAC	5 cut(s)	80, 446, 749, 783, 1616
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviQI	GTAC	5 cut(s)	80, 446, 749, 783, 1616
DdeI	CTNAG	4 cut(s)	114, 255, 366, 420
DpnI	GATC	8 cut(s)	100, 177, 337, 513, 573, 686, 1380, 1500
DpnII	GATC	8 cut(s)	98, 175, 335, 511, 571, 684, 1378, 1498
DraI	TTTAAA	3 cut(s)	915, 927, 1146
EaeI	YGGCCR	1 cut(s)	777
Eam1104I	CTCTTC	5 cut(s)	191, 312, 561, 657, 930
EarI	CTCTTC	5 cut(s)	191, 312, 561, 657, 930
Ecl136II	GAGCTC	1 cut(s)	1546
Eco130I	CCWWGG	3 cut(s)	295, 619, 1383
Eco24I	GRGCYC	1 cut(s)	1548
Eco32I	GATATC	1 cut(s)	1105
Eco47I	GGWCC	4 cut(s)	14, 62, 413, 462
Eco47III	AGCGCT	1 cut(s)	1193
Eco53kI	GAGCTC	1 cut(s)	1546
Eco57I	CTGAAG	3 cut(s)	585, 693, 1001
Eco88I	CYCGRG	2 cut(s)	150, 1114
EcoICRI	GAGCTC	1 cut(s)	1546
EcoO109I	RGGNCCY	3 cut(s)	14, 413, 462
EcoRII	CCWGG	2 cut(s)	876, 1494
EcoRV	GATATC	1 cut(s)	1105
EcoT14I	CCWWGG	3 cut(s)	295, 619, 1383
EcoT22I	ATGCAT	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	1548
ErhI	CCWWGG	3 cut(s)	295, 619, 1383
FaqI	GGGAC	2 cut(s)	449, 1307
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	1 cut(s)	373
FokI	GGATG	3 cut(s)	627, 811, 1608
FriOI	GRGCYC	1 cut(s)	1548
Fsp4HI	GCNGC	1 cut(s)	373
FspBI	CTAG	9 cut(s)	125, 189, 399, 453, 678, 1085, 1221, 1263, 1590
FspI	TGCGCA	1 cut(s)	376
GlaI	GCGC	3 cut(s)	56, 376, 1193
GluI	GCNGC	1 cut(s)	373
GsaI	CCCAGC	1 cut(s)	1559
HaeII	RGCGCY	1 cut(s)	1195
HaeIII	GGCC	3 cut(s)	474, 618, 779
HapII	CCGG	2 cut(s)	555, 1115
HgaI	GACGC	2 cut(s)	890, 1084
HhaI	GCGC	3 cut(s)	57, 377, 1194
Hin1I	GRCGYC	1 cut(s)	1095
Hin6I	GCGC	3 cut(s)	55, 375, 1192
HinP1I	GCGC	3 cut(s)	55, 375, 1192
HinfI	GANTC	6 cut(s)	33, 250, 437, 668, 1303, 1463
HpaII	CCGG	2 cut(s)	555, 1115
HphI	GGTGA	4 cut(s)	205, 277, 885, 1544
Hpy166II	GTNNAC	3 cut(s)	211, 519, 942
Hpy188I	TCNGA	8 cut(s)	286, 305, 367, 565, 633, 673, 1055, 1492
Hpy188III	TCNNGA	6 cut(s)	102, 254, 792, 1207, 1227, 1282
Hpy8I	GTNNAC	3 cut(s)	211, 519, 942
HpyAV	CCTTC	7 cut(s)	459, 789, 812, 1085, 1120, 1351, 1559
HpyCH4III	ACNGT	6 cut(s)	29, 540, 705, 787, 1136, 1290
HpyCH4IV	ACGT	1 cut(s)	807
HpyCH4V	TGCA	7 cut(s)	87, 92, 713, 737, 826, 995, 1157
HpyF10VI	GCNNNNNNNGC	3 cut(s)	832, 1029, 1580
HpyF3I	CTNAG	4 cut(s)	114, 255, 366, 420
HpySE526I	ACGT	1 cut(s)	807
Hsp92I	GRCGYC	1 cut(s)	1095
HspAI	GCGC	3 cut(s)	55, 375, 1192
KpnI	GGTACC	1 cut(s)	449
Kzo9I	GATC	8 cut(s)	98, 175, 335, 511, 571, 684, 1378, 1498
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	1551
Lsp1109I	GCAGC	1 cut(s)	359
LweI	GCATC	4 cut(s)	385, 649, 994, 1268
MaeI	CTAG	9 cut(s)	125, 189, 399, 453, 678, 1085, 1221, 1263, 1590
MaeII	ACGT	1 cut(s)	807
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	8 cut(s)	100, 177, 337, 513, 573, 686, 1380, 1500
MboI	GATC	8 cut(s)	98, 175, 335, 511, 571, 684, 1378, 1498
MfeI	CAATTG	2 cut(s)	950, 1079
MflI	RGATCY	6 cut(s)	98, 335, 511, 571, 1378, 1498
MhlI	GDGCHC	2 cut(s)	1548, 1576
MlsI	TGGCCA	1 cut(s)	779
MluNI	TGGCCA	1 cut(s)	779
MlyI	GAGTC	3 cut(s)	42, 431, 1297
Mox20I	TGGCCA	1 cut(s)	779
Mph1103I	ATGCAT	1 cut(s)	94
MscI	TGGCCA	1 cut(s)	779
MseI	TTAA	8 cut(s)	237, 279, 480, 914, 926, 1008, 1145, 1251
MslI	CAYNNNNRTG	1 cut(s)	624
Msp20I	TGGCCA	1 cut(s)	779
MspCI	CTTAAG	1 cut(s)	479
MspI	CCGG	2 cut(s)	555, 1115
MspR9I	CCNGG	5 cut(s)	556, 878, 1115, 1116, 1496
MunI	CAATTG	2 cut(s)	950, 1079
Mva1269I	GAATGC	1 cut(s)	828
MvaI	CCWGG	2 cut(s)	878, 1496
MwoI	GCNNNNNNNGC	3 cut(s)	832, 1029, 1580
NciI	CCSGG	3 cut(s)	556, 1115, 1116
NcoI	CCATGG	3 cut(s)	295, 619, 1383
NdeII	GATC	8 cut(s)	98, 175, 335, 511, 571, 684, 1378, 1498
NheI	GCTAGC	2 cut(s)	677, 1084
NlaIV	GGNNCC	3 cut(s)	447, 1380, 1573
NmuCI	GTSAC	1 cut(s)	34
NsbI	TGCGCA	1 cut(s)	376
NsiI	ATGCAT	1 cut(s)	94
NspI	RCATGY	4 cut(s)	96, 1036, 1280, 1616
PaeR7I	CTCGAG	1 cut(s)	150
PciI	ACATGT	2 cut(s)	1276, 1612
PciSI	GCTCTTC	1 cut(s)	191
PctI	GAATGC	1 cut(s)	828
PfeI	GAWTC	3 cut(s)	250, 668, 1463
PflMI	CCANNNNNTGG	1 cut(s)	877
PkrI	GCNGC	1 cut(s)	374
PleI	GAGTC	3 cut(s)	41, 431, 1297
PpsI	GAGTC	3 cut(s)	41, 431, 1297
PpuMI	RGGWCCY	3 cut(s)	14, 413, 462
PscI	ACATGT	2 cut(s)	1276, 1612
Psp124BI	GAGCTC	1 cut(s)	1548
Psp1406I	AACGTT	1 cut(s)	807
Psp5II	RGGWCCY	3 cut(s)	14, 413, 462
Psp6I	CCWGG	2 cut(s)	876, 1494
PspFI	CCCAGC	1 cut(s)	1555
PspGI	CCWGG	2 cut(s)	876, 1494
PspN4I	GGNNCC	3 cut(s)	447, 1380, 1573
PspPI	GGNCC	4 cut(s)	14, 62, 413, 462
PspPPI	RGGWCCY	3 cut(s)	14, 413, 462
PspXI	VCTCGAGB	1 cut(s)	150
PstI	CTGCAG	1 cut(s)	997
PstNI	CAGNNNCTG	2 cut(s)	161, 416
PsuI	RGATCY	6 cut(s)	98, 335, 511, 571, 1378, 1498
RsaI	GTAC	5 cut(s)	81, 447, 750, 784, 1617
RsaNI	GTAC	5 cut(s)	80, 446, 749, 783, 1616
RseI	CAYNNNNRTG	1 cut(s)	624
SacI	GAGCTC	1 cut(s)	1548
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	8 cut(s)	237, 279, 480, 914, 926, 1008, 1145, 1251
SatI	GCNGC	1 cut(s)	373
Sau3AI	GATC	8 cut(s)	98, 175, 335, 511, 571, 684, 1378, 1498
Sau96I	GGNCC	4 cut(s)	14, 62, 413, 462
ScaI	AGTACT	2 cut(s)	81, 784
SchI	GAGTC	3 cut(s)	42, 431, 1297
ScrFI	CCNGG	5 cut(s)	556, 878, 1115, 1116, 1496
SduI	GDGCHC	2 cut(s)	1548, 1576
SfaNI	GCATC	4 cut(s)	385, 649, 994, 1268
SfcI	CTRYAG	1 cut(s)	993
Sfr274I	CTCGAG	1 cut(s)	150
SinI	GGWCC	4 cut(s)	14, 62, 413, 462
SlaI	CTCGAG	1 cut(s)	150
SmaI	CCCGGG	1 cut(s)	1116
SmiMI	CAYNNNNRTG	1 cut(s)	624
SmlI	CTYRAG	3 cut(s)	150, 479, 1205
SmoI	CTYRAG	3 cut(s)	150, 479, 1205
SpeI	ACTAGT	2 cut(s)	124, 1589
SspMI	CTAG	9 cut(s)	125, 189, 399, 453, 678, 1085, 1221, 1263, 1590
SstI	GAGCTC	1 cut(s)	1548
StyD4I	CCNGG	5 cut(s)	554, 876, 1113, 1114, 1494
StyI	CCWWGG	3 cut(s)	295, 619, 1383
TaaI	ACNGT	6 cut(s)	29, 540, 705, 787, 1136, 1290
TaiI	ACGT	1 cut(s)	810
TaqI	TCGA	6 cut(s)	103, 151, 425, 683, 1273, 1601
TatI	WGTACW	4 cut(s)	79, 748, 782, 1615
TfiI	GAWTC	3 cut(s)	250, 668, 1463
Tru1I	TTAA	8 cut(s)	237, 279, 480, 914, 926, 1008, 1145, 1251
Tru9I	TTAA	8 cut(s)	237, 279, 480, 914, 926, 1008, 1145, 1251
TscAI	CASTG	5 cut(s)	32, 394, 710, 843, 903
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	372
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	6 cut(s)	546, 815, 1346, 1370, 1383, 1484
TspGWI	ACGGA	1 cut(s)	1506
TspMI	CCCGGG	1 cut(s)	1114
TspRI	CASTG	5 cut(s)	32, 394, 710, 843, 903
Van91I	CCANNNNNTGG	1 cut(s)	877
Vha464I	CTTAAG	1 cut(s)	479
VpaK11BI	GGWCC	4 cut(s)	14, 62, 413, 462
XapI	RAATTY	3 cut(s)	928, 1010, 1471
XceI	RCATGY	4 cut(s)	96, 1036, 1280, 1616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1179
XhoI	CTCGAG	1 cut(s)	150
XmaI	CCCGGG	1 cut(s)	1114
XmiI	GTMKAC	1 cut(s)	518
XspI	CTAG	9 cut(s)	125, 189, 399, 453, 678, 1085, 1221, 1263, 1590
ZrmI	AGTACT	2 cut(s)	81, 784
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.