Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007896

Physical Location & Seq

Genomic Coordinates Reverse (-)

46493663 .. 46498147

Gene Structure 4485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1773 bp

ATGATCATTGTTTTGTGGCTGCAAATCATTCTTGAACTTTTTAAGCTCCCTTCTGTCAGCTTATTGAGGGAAACTTTGTGGGCTACTCATACATTGGTATTGGTGTTGAATAGAAATTCAAGGGCAATGCCAACTCCTGGTATTGTTGATTGTGACTTTGTTGTTGTGCCTTTGTTCTGGACTGCATCCTGTCTATCAGTGCCTTGGCACCCCCTTTGGCGCAATGGGCCACCTGAAAAGCCAGTACTTTGCAATGCATGTGGATCTCGATGGAGGACTAAGGGAACACTTGTAAATTATACCCCTCTACATGCTCGAGCAGAACCTGAGGATTATGAAGATCACAGAGTTTCCAGGATGAAGAGCATGTCTATAAATAAAAACAAAGAAGTGAAACTGGTTAAAAGAAAGCAGCATCCTGACAGTGTAGTGGTTGGTGCTGATTACTCCCATGGGTTTCGAAAGGTAGTTGATGAAGATACAAGTAATAGATCCAGTTCTGGGTCTGCTGTGTCTAACACTGAAAGCTGTGCACACTTTGGGAGTGCAGATGCAAGTGATTTGACAGGTCCTGCTCAGTCAATGGTGTGGGACTCAACGGTACCTTCTAGGAAAAGGACCTGTGTCGGTCGTCCAAAGCAATCTCCTGTTGAAAAGCTCACAAAAGATCTATATACTATTTTACATGAACAACAGTCTTCTTACTTCTCTGGGTCTTCTGAAGAGGATCTACTTTTTGAGAGTGAAACACCTATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTCATAAGGCATCCCAGCTCAATAGCCCGAGAAGAGGAGTCTGAAGCTAGCTCGCTTTCAGTTGATAACAGGCAGTGCCATATAAATGAGGCTTATTCCCATTCTGCATCCCTTTTTGTACATAATAACAAGGGTGTAAATATGTCCAGTACTGTGATTGGAAAGATGAATAGCCCTGCAGGACAAGGGATGCAACAAGAGCCACTGAAAAGGGACAAGTCACAGCATGACAACTTCCAAATCTTGGGAAACCATAATTCACCACTTCATCATATAGATTTGAATGATATTGTAAATTATGAAGAGTTCATGAGGCAGTTGACAAATGAGGAGCAACAGCAATTACTGAAGCATCTATCTCCAGTGGATGTCAAGTTTCCTTATAGCCTCAGAAATATGTTTGATAGCCCTCAGTTCAGAGAGAACTTAACTTCCTTTCAGCAACTGCTTGCAGAAGGGGTCTTTGATATCTCCTTCCCAGGGGCAAAAACTGAAGACTGTAAGACTTTGAAAAGGCTTGCATTATCCGATTCTTTGAAATCTAAGTGGGTTGAACGCTATCATCTTATCAAGAAGTGTAAAACTAGCTCCGGAAAGTCTGTTGTCTCTGGATCTAACTTCACCACATCTAGTAATTTTCGACAAGTCAAGAGACTGCGGGATAGTGAGACTCGAAGCTTTCCAGATTGTGATGAAGAGCCCCAAAAGGGTAATCATGAAGGGGGCTATGAAAACAAGGATATCCTGGACTATGATGGTTCTTGCTTTAGTCCAAAAAGCCTCTTTGCTTTGCCTCCTGATGGTAGCTCTCTCATGCTGGATTCCATGAGTTTTGTCGAAGAAAGTTCTGACCAGGATCTTCTGCTGGATATTCCATCCAATGGATCCTACCCCCAAGCAGAGCTTCTTCACCCAGCCTTGAGTTTTGGTTCCCAACAAGCAAGCACTAGTAGTAGCTCAATATACCCACATCTACTCCATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASXH GATA RPN13_C

Protein Analysis

590

Amino Acids

66.06

Weight (kDa)

6.1

Isoelectric Point (pI)

60.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	71 - 96	7.7e-08	GATA zinc finger
ASXH	PF13919	334 - 418	7.2e-09	Asx homology domain
RPN13_C	PF16550	351 - 416	1.5e-06	UCH-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17570 AT4G17570 AT4G17570 AT5G47140
fragaria_vesca	FvH4_5g20240 FvH4_5g20240
malus_domestica	MD04G1052000.v1.1 MD06G1048100.v1.1
prunus_persica	Prupe.5G058300_v2.0.a1 Prupe.5G058300_v2.0.a1 Prupe.5G058300_v2.0.a1
pyrus_communis	pycom04g04570 pycom06g04110
rosa_chinensis	RchiOBHm_Chr7g0205311
rosa_laevigata	RLG00000003389
rosa_multiflora	Rmu_sc0001072.1_g000024 Rmu_ssc0000004.1_g000026
rosa_roxburghii	Rroxscaffold_3G00252480
rosa_rugosa	Rorug07G0089600
rosa_samantha	Rh7AG220300 Rh7BG216400 Rh7CG233100 Rh7DG227200
rosa_wichuraiana	Rw7G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	601
AccB1I	GGYRCC	2 cut(s)	207, 601
AccB7I	CCANNNNNTGG	3 cut(s)	137, 1030, 1667
AccIII	TCCGGA	1 cut(s)	1376
AciI	CCGC	1 cut(s)	1444
AclWI	GGATC	7 cut(s)	271, 486, 735, 1405, 1650, 1665, 1678
AcsI	RAATTY	1 cut(s)	115
AcuI	CTGAAG	4 cut(s)	741, 849, 1154, 1299
AfaI	GTAC	4 cut(s)	246, 603, 906, 937
AfiI	CCNNNNNNNGG	8 cut(s)	137, 501, 820, 1030, 1266, 1493, 1586, 1667
AgsI	TTSAA	8 cut(s)	35, 109, 120, 653, 1069, 1297, 1324, 1340
AhlI	ACTAGT	1 cut(s)	1733
AjnI	CCWGG	5 cut(s)	136, 353, 1264, 1530, 1638
AjuI	GAANNNNNNNTTGG	2 cut(s)	1674, 1706
AloI	GAACNNNNNNTCC	2 cut(s)	1202, 1234
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	4 cut(s)	763, 1396, 1432, 1448
Alw44I	GTGCAC	1 cut(s)	531
AlwI	GGATC	7 cut(s)	271, 486, 735, 1405, 1650, 1665, 1678
AlwNI	CAGNNNCTG	3 cut(s)	326, 572, 1231
Ama87I	CYCGRG	2 cut(s)	315, 813
Aor13HI	TCCGGA	1 cut(s)	1376
AoxI	GGCC	1 cut(s)	227
ApaLI	GTGCAC	1 cut(s)	531
ApeKI	GCWGC	2 cut(s)	19, 412
ApoI	RAATTY	1 cut(s)	115
Asp718I	GGTACC	1 cut(s)	601
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	3 cut(s)	227, 569, 618
AsuHPI	GGTGA	3 cut(s)	1038, 1399, 1688
AsuII	TTCGAA	1 cut(s)	460
AsuNHI	GCTAGC	1 cut(s)	833
AvaI	CYCGRG	2 cut(s)	315, 813
AvaII	GGWCC	2 cut(s)	569, 618
AxyI	CCTNAGG	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	535
BamHI	GGATCC	1 cut(s)	1670
BanI	GGYRCC	2 cut(s)	207, 601
BanII	GRGCYC	1 cut(s)	1488
BarI	GAAGNNNNNNTAC	2 cut(s)	714, 746
BbsI	GAAGAC	3 cut(s)	690, 708, 1287
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	2 cut(s)	6, 424
BccI	CCATC	4 cut(s)	264, 1535, 1580, 1669
BciT130I	CCWGG	5 cut(s)	138, 355, 1266, 1532, 1640
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	4 cut(s)	763, 1396, 1432, 1448
BcuI	ACTAGT	1 cut(s)	1733
BfaI	CTAG	5 cut(s)	609, 834, 1371, 1416, 1734
BfmI	CTRYAG	1 cut(s)	963
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	2 cut(s)	20, 413
BlsI	GCNGC	2 cut(s)	21, 414
BmcAI	AGTACT	2 cut(s)	246, 937
Bme1390I	CCNGG	5 cut(s)	138, 355, 1266, 1532, 1640
Bme18I	GGWCC	2 cut(s)	569, 618
BmeT110I	CYCGRG	2 cut(s)	315, 813
BmgT120I	GGNCC	3 cut(s)	227, 569, 618
BmiI	GGNNCC	4 cut(s)	209, 603, 1672, 1717
BmrFI	CCNGG	5 cut(s)	138, 355, 1266, 1532, 1640
BmsI	GCATC	7 cut(s)	194, 424, 541, 805, 902, 966, 1147
BmtI	GCTAGC	1 cut(s)	837
BoxI	GACNNNNGTC	1 cut(s)	623
BpiI	GAAGAC	3 cut(s)	690, 708, 1287
BpmI	CTGGAG	1 cut(s)	1131
Bpu14I	TTCGAA	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	1726
BsaI	GGTCTC	1 cut(s)	763
BsaJI	CCNNGG	4 cut(s)	203, 451, 1264, 1265
BsaWI	WCCGGW	1 cut(s)	1376
BsaXI	ACNNNNNCTCC	1 cut(s)	1746
Bsc4I	CCNNNNNNNGG	8 cut(s)	137, 501, 820, 1030, 1266, 1493, 1586, 1667
Bse1I	ACTGG	5 cut(s)	242, 402, 495, 933, 1148
Bse21I	CCTNAGG	1 cut(s)	327
Bse3DI	GCAATG	3 cut(s)	132, 229, 259
BseAI	TCCGGA	1 cut(s)	1376
BseBI	CCWGG	5 cut(s)	138, 355, 1266, 1532, 1640
BseDI	CCNNGG	4 cut(s)	203, 451, 1264, 1265
BseGI	GGATG	9 cut(s)	185, 363, 415, 796, 893, 981, 1159, 1661, 1765
BseLI	CCNNNNNNNGG	8 cut(s)	137, 501, 820, 1030, 1266, 1493, 1586, 1667
BseMI	GCAATG	3 cut(s)	132, 229, 259
BseMII	CTCAG	4 cut(s)	318, 590, 1189, 1211
BseNI	ACTGG	5 cut(s)	242, 402, 495, 933, 1148
BseRI	GAGGAG	2 cut(s)	836, 1130
BseSI	GKGCMC	1 cut(s)	535
BseXI	GCAGC	2 cut(s)	6, 424
BseYI	CCCAGC	2 cut(s)	800, 1699
BsgI	GTGCAG	1 cut(s)	567
Bsh1285I	CGRYCG	1 cut(s)	631
BshFI	GGCC	1 cut(s)	229
BshNI	GGYRCC	2 cut(s)	207, 601
BsiEI	CGRYCG	1 cut(s)	631
BsiHKAI	GWGCWC	1 cut(s)	535
BsiHKCI	CYCGRG	2 cut(s)	315, 813
BsiSI	CCGG	1 cut(s)	1377
BslFI	GGGAC	2 cut(s)	605, 1013
BslI	CCNNNNNNNGG	8 cut(s)	137, 501, 820, 1030, 1266, 1493, 1586, 1667
BsmAI	GTCTC	4 cut(s)	763, 1396, 1432, 1448
BsmFI	GGGAC	2 cut(s)	605, 1013
BsnI	GGCC	1 cut(s)	229
Bso31I	GGTCTC	1 cut(s)	763
BsoBI	CYCGRG	2 cut(s)	315, 813
Bsp119I	TTCGAA	1 cut(s)	460
Bsp1286I	GDGCHC	2 cut(s)	535, 1488
Bsp13I	TCCGGA	1 cut(s)	1376
Bsp1407I	TGTACA	1 cut(s)	904
Bsp143I	GATC	9 cut(s)	3, 263, 340, 491, 667, 727, 1397, 1642, 1670
Bsp19I	CCATGG	1 cut(s)	451
BspACI	CCGC	1 cut(s)	1444
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	4 cut(s)	319, 589, 1188, 1210
BspEI	TCCGGA	1 cut(s)	1376
BspHI	TCATGA	2 cut(s)	1095, 1501
BspLI	GGNNCC	4 cut(s)	209, 603, 1672, 1717
BspMAI	CTGCAG	1 cut(s)	967
BspOI	GCTAGC	1 cut(s)	837
BspPI	GGATC	7 cut(s)	271, 486, 735, 1405, 1650, 1665, 1678
BspQI	GCTCTTC	2 cut(s)	356, 1476
BspT104I	TTCGAA	1 cut(s)	460
BspT107I	GGYRCC	2 cut(s)	207, 601
BspTNI	GGTCTC	1 cut(s)	763
BsrDI	GCAATG	3 cut(s)	132, 229, 259
BsrGI	TGTACA	1 cut(s)	904
BsrI	ACTGG	5 cut(s)	242, 402, 495, 933, 1148
BssECI	CCNNGG	4 cut(s)	203, 451, 1264, 1265
BssMI	GATC	9 cut(s)	3, 263, 340, 491, 667, 727, 1397, 1642, 1670
BssT1I	CCWWGG	2 cut(s)	203, 451
Bst2UI	CCWGG	5 cut(s)	138, 355, 1266, 1532, 1640
Bst4CI	ACNGT	5 cut(s)	425, 601, 696, 940, 1286
Bst6I	CTCTTC	5 cut(s)	356, 717, 813, 1083, 1476
BstAUI	TGTACA	1 cut(s)	904
BstBI	TTCGAA	1 cut(s)	460
BstC8I	GCNNGC	5 cut(s)	835, 839, 1236, 1305, 1729
BstDEI	CTNAG	6 cut(s)	279, 327, 576, 1175, 1197, 1329
BstDSI	CCRYGG	1 cut(s)	451
BstF5I	GGATG	9 cut(s)	185, 363, 415, 796, 893, 981, 1159, 1661, 1765
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	9 cut(s)	6, 266, 343, 494, 670, 730, 1400, 1645, 1673
BstMAI	GTCTC	4 cut(s)	763, 1396, 1432, 1448
BstMBI	GATC	9 cut(s)	3, 263, 340, 491, 667, 727, 1397, 1642, 1670
BstMCI	CGRYCG	1 cut(s)	631
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 985
BstNI	CCWGG	5 cut(s)	138, 355, 1266, 1532, 1640
BstNSI	RCATGY	3 cut(s)	261, 314, 370
BstPAI	GACNNNNGTC	1 cut(s)	623
BstSCI	CCNGG	5 cut(s)	136, 353, 1264, 1530, 1638
BstSFI	CTRYAG	1 cut(s)	963
BstSLI	GKGCMC	1 cut(s)	535
BstV1I	GCAGC	2 cut(s)	6, 424
BstV2I	GAAGAC	3 cut(s)	690, 708, 1287
BstX2I	RGATCY	7 cut(s)	263, 491, 667, 727, 1397, 1642, 1670
BstYI	RGATCY	7 cut(s)	263, 491, 667, 727, 1397, 1642, 1670
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	229
BtgI	CCRYGG	1 cut(s)	451
BtsCI	GGATG	9 cut(s)	185, 363, 415, 796, 893, 981, 1159, 1661, 1765
BtsI	GCAGTG	1 cut(s)	866
BtsIMutI	CAGTG	6 cut(s)	204, 430, 519, 866, 989, 1155
Cac8I	GCNNGC	5 cut(s)	835, 839, 1236, 1305, 1729
CaiI	CAGNNNCTG	3 cut(s)	326, 572, 1231
CciI	TCATGA	2 cut(s)	1095, 1501
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	3 cut(s)	227, 569, 618
Csp6I	GTAC	4 cut(s)	245, 602, 905, 936
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviQI	GTAC	4 cut(s)	245, 602, 905, 936
DdeI	CTNAG	6 cut(s)	279, 327, 576, 1175, 1197, 1329
DpnI	GATC	9 cut(s)	5, 265, 342, 493, 669, 729, 1399, 1644, 1672
DpnII	GATC	9 cut(s)	3, 263, 340, 491, 667, 727, 1397, 1642, 1670
Eam1104I	CTCTTC	5 cut(s)	356, 717, 813, 1083, 1476
EarI	CTCTTC	5 cut(s)	356, 717, 813, 1083, 1476
Eco130I	CCWWGG	2 cut(s)	203, 451
Eco24I	GRGCYC	1 cut(s)	1488
Eco31I	GGTCTC	1 cut(s)	763
Eco32I	GATATC	2 cut(s)	1255, 1528
Eco47I	GGWCC	2 cut(s)	569, 618
Eco57I	CTGAAG	4 cut(s)	741, 849, 1154, 1299
Eco81I	CCTNAGG	1 cut(s)	327
Eco88I	CYCGRG	2 cut(s)	315, 813
EcoO109I	RGGNCCY	2 cut(s)	569, 618
EcoRII	CCWGG	5 cut(s)	136, 353, 1264, 1530, 1638
EcoRV	GATATC	2 cut(s)	1255, 1528
EcoT14I	CCWWGG	2 cut(s)	203, 451
EcoT22I	ATGCAT	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	1488
ErhI	CCWWGG	2 cut(s)	203, 451
FalI	AAGNNNNNCTT	2 cut(s)	1674, 1706
FaqI	GGGAC	2 cut(s)	605, 1013
FauI	CCCGC	1 cut(s)	1437
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	20, 413
FokI	GGATG	9 cut(s)	172, 370, 402, 783, 880, 988, 1166, 1648, 1752
FriOI	GRGCYC	1 cut(s)	1488
Fsp4HI	GCNGC	2 cut(s)	20, 413
FspBI	CTAG	5 cut(s)	609, 834, 1371, 1416, 1734
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	2 cut(s)	20, 413
GsaI	CCCAGC	2 cut(s)	804, 1703
GsuI	CTGGAG	1 cut(s)	1131
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	1 cut(s)	1377
HhaI	GCGC	1 cut(s)	222
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	1107
HindII	GTYRAC	1 cut(s)	1107
HindIII	AAGCTT	1 cut(s)	1462
HinfI	GANTC	5 cut(s)	593, 824, 1316, 1456, 1607
HpaII	CCGG	1 cut(s)	1377
HphI	GGTGA	3 cut(s)	1038, 1399, 1688
Hpy166II	GTNNAC	2 cut(s)	533, 1107
Hpy188I	TCNGA	6 cut(s)	721, 829, 1178, 1205, 1315, 1636
Hpy8I	GTNNAC	2 cut(s)	533, 1107
HpyAV	CCTTC	5 cut(s)	60, 615, 1235, 1270, 1499
HpyCH4III	ACNGT	5 cut(s)	425, 601, 696, 940, 1286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 985
HpyF3I	CTNAG	6 cut(s)	279, 327, 576, 1175, 1197, 1329
HspAI	GCGC	1 cut(s)	220
Kpn2I	TCCGGA	1 cut(s)	1376
KpnI	GGTACC	1 cut(s)	605
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	9 cut(s)	3, 263, 340, 491, 667, 727, 1397, 1642, 1670
LguI	GCTCTTC	2 cut(s)	356, 1476
LmnI	GCTCC	3 cut(s)	51, 1117, 1379
Lsp1109I	GCAGC	2 cut(s)	6, 424
LweI	GCATC	7 cut(s)	194, 424, 541, 805, 902, 966, 1147
MaeI	CTAG	5 cut(s)	609, 834, 1371, 1416, 1734
MaeIII	GTNAC	2 cut(s)	152, 1005
MalI	GATC	9 cut(s)	5, 265, 342, 493, 669, 729, 1399, 1644, 1672
MboI	GATC	9 cut(s)	3, 263, 340, 491, 667, 727, 1397, 1642, 1670
MflI	RGATCY	7 cut(s)	263, 491, 667, 727, 1397, 1642, 1670
MhlI	GDGCHC	2 cut(s)	535, 1488
MluCI	AATT	6 cut(s)	115, 295, 1042, 1081, 1127, 1420
MlyI	GAGTC	3 cut(s)	587, 833, 1450
Mph1103I	ATGCAT	1 cut(s)	259
MroI	TCCGGA	1 cut(s)	1376
MseI	TTAA	3 cut(s)	42, 402, 1214
MslI	CAYNNNNRTG	2 cut(s)	780, 870
MspI	CCGG	1 cut(s)	1377
MspR9I	CCNGG	5 cut(s)	138, 355, 1266, 1532, 1640
MvaI	CCWGG	5 cut(s)	138, 355, 1266, 1532, 1640
MwoI	GCNNNNNNNGC	2 cut(s)	226, 985
NcoI	CCATGG	1 cut(s)	451
NdeII	GATC	9 cut(s)	3, 263, 340, 491, 667, 727, 1397, 1642, 1670
NheI	GCTAGC	1 cut(s)	833
NlaIV	GGNNCC	4 cut(s)	209, 603, 1672, 1717
NmuCI	GTSAC	2 cut(s)	152, 1005
NsiI	ATGCAT	1 cut(s)	259
NspI	RCATGY	3 cut(s)	261, 314, 370
NspV	TTCGAA	1 cut(s)	460
PaeR7I	CTCGAG	1 cut(s)	315
PagI	TCATGA	2 cut(s)	1095, 1501
PasI	CCCWGGG	1 cut(s)	1265
PciSI	GCTCTTC	2 cut(s)	356, 1476
PfeI	GAWTC	2 cut(s)	1316, 1607
PflMI	CCANNNNNTGG	3 cut(s)	137, 1030, 1667
PfoI	TCCNGGA	2 cut(s)	353, 1530
PkrI	GCNGC	2 cut(s)	21, 414
PleI	GAGTC	3 cut(s)	587, 832, 1450
PpsI	GAGTC	3 cut(s)	587, 832, 1450
PpuMI	RGGWCCY	2 cut(s)	569, 618
PshAI	GACNNNNGTC	1 cut(s)	623
Psp5II	RGGWCCY	2 cut(s)	569, 618
Psp6I	CCWGG	5 cut(s)	136, 353, 1264, 1530, 1638
PspFI	CCCAGC	2 cut(s)	800, 1699
PspGI	CCWGG	5 cut(s)	136, 353, 1264, 1530, 1638
PspN4I	GGNNCC	4 cut(s)	209, 603, 1672, 1717
PspPI	GGNCC	3 cut(s)	227, 569, 618
PspPPI	RGGWCCY	2 cut(s)	569, 618
PspXI	VCTCGAGB	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	967
PstNI	CAGNNNCTG	3 cut(s)	326, 572, 1231
PsuI	RGATCY	7 cut(s)	263, 491, 667, 727, 1397, 1642, 1670
RsaI	GTAC	4 cut(s)	246, 603, 906, 937
RsaNI	GTAC	4 cut(s)	245, 602, 905, 936
RseI	CAYNNNNRTG	2 cut(s)	780, 870
SapI	GCTCTTC	2 cut(s)	356, 1476
SaqAI	TTAA	3 cut(s)	42, 402, 1214
SatI	GCNGC	2 cut(s)	20, 413
Sau3AI	GATC	9 cut(s)	3, 263, 340, 491, 667, 727, 1397, 1642, 1670
Sau96I	GGNCC	3 cut(s)	227, 569, 618
SbfI	CCTGCAGG	1 cut(s)	967
ScaI	AGTACT	2 cut(s)	246, 937
SchI	GAGTC	3 cut(s)	587, 833, 1450
ScrFI	CCNGG	5 cut(s)	138, 355, 1266, 1532, 1640
SdaI	CCTGCAGG	1 cut(s)	967
SduI	GDGCHC	2 cut(s)	535, 1488
SfaNI	GCATC	7 cut(s)	194, 424, 541, 805, 902, 966, 1147
SfcI	CTRYAG	1 cut(s)	963
Sfr274I	CTCGAG	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	460
SinI	GGWCC	2 cut(s)	569, 618
SlaI	CTCGAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	2 cut(s)	780, 870
SmlI	CTYRAG	2 cut(s)	315, 1705
SmoI	CTYRAG	2 cut(s)	315, 1705
SpeI	ACTAGT	1 cut(s)	1733
Sse8387I	CCTGCAGG	1 cut(s)	967
Sse9I	AATT	6 cut(s)	115, 295, 1042, 1081, 1127, 1420
SsiI	CCGC	1 cut(s)	1444
SspMI	CTAG	5 cut(s)	609, 834, 1371, 1416, 1734
StyD4I	CCNGG	5 cut(s)	136, 353, 1264, 1530, 1638
StyI	CCWWGG	2 cut(s)	203, 451
TaaI	ACNGT	5 cut(s)	425, 601, 696, 940, 1286
TaqI	TCGA	6 cut(s)	268, 316, 460, 1426, 1459, 1623
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	6 cut(s)	115, 295, 1042, 1081, 1127, 1420
TatI	WGTACW	3 cut(s)	244, 904, 935
TfiI	GAWTC	2 cut(s)	1316, 1607
Tru1I	TTAA	3 cut(s)	42, 402, 1214
Tru9I	TTAA	3 cut(s)	42, 402, 1214
TscAI	CASTG	6 cut(s)	204, 430, 526, 866, 996, 1155
TseFI	GTSAC	2 cut(s)	152, 1005
TseI	GCWGC	2 cut(s)	19, 412
Tsp45I	GTSAC	2 cut(s)	152, 1005
TspRI	CASTG	6 cut(s)	204, 430, 526, 866, 996, 1155
Van91I	CCANNNNNTGG	3 cut(s)	137, 1030, 1667
VneI	GTGCAC	1 cut(s)	531
VpaK11BI	GGWCC	2 cut(s)	569, 618
XapI	RAATTY	1 cut(s)	115
XceI	RCATGY	3 cut(s)	261, 314, 370
XhoI	CTCGAG	1 cut(s)	315
XspI	CTAG	5 cut(s)	609, 834, 1371, 1416, 1734
ZrmI	AGTACT	2 cut(s)	246, 937
Zsp2I	ATGCAT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.