Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007896

Physical Location & Seq

Genomic Coordinates Forward (+)

19144601 .. 19147657

Gene Structure 3057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGGGAAGCAAGGTCCTTGCTATCACTGTGGAGTTACAAGTACACCTCTATGGAGAAACGGGCCACCAGAGAAGCCGGTGTTGTGCAATGCGTGTGGTTCGAGGTGGAGAACTAAAGGATCATTAGTAAACTACACACCTCTTCATGCTCGTGCTGAAGGTGATGAGACTGAGATTGAGGATCATAGAACTCAAACGGTGATGATTAAGGGAATGTCTTTGAACAAAAAGATTCCCAAGAGGAAACCATATCAAGAAAACTTCACAGTGAAAAGAGCTAACTTGGAATTCCATACCGGTTTCAAGAGGAAGGCTCTGGATGAAGAAGCTAGCAATAGATCGAGTTCAGGATCGGTTGTATCAAACTCCGAGAGCTGTGCACAATCTAATGCGTGGGACTCGACTTTTCCTTGTAAGAGAAGGACATGTGTGGGACGTCCAAAGGCAGCTTCTTCTGTTGAAAAGCTCACAAAGGATCTTTATACTATTCTACAAGAACAGCAATCTTCTTGTCTCTCTGGTACTTCAGAGGAAGATTTGCTTTTTGAGAATGAAACACCAATGCTGTTAGGACATGGTAGTGTTCTTATGAGAGATCCTCACTCAGGTGCTCGAGAAGAGGAATCTGAAGCTAGCTCACTCTTAGTTGAGAGCAGCAAGTCTTCATCAGTTCATTCTGTTAAATTTGGTGGAAAAGCAATGAAGCAGGAGCAAGTGAAGAGGAGCAAATCTCAAGTCTTAGGAAGACATAGTTCACTACTCTGTAGCATAGATTTGAAGGATGTTTTCAACTTTGATGAGTTCATAGAAAATTTCACAGAGGAAGAACAGCAAAAACTGATGAAATTACTTCCTCAAGTTGACTCTGTTGATCGTCCTGATAGCCTCAGAAGCATGTTTGAGAGTTCTCAATTCAAAGAGAACTTATCCTTGTTTCAGCAACTTGTGGCAGATGGTGTTTTTGAGACAAATTCGTCTTATGCAAAACTTGAAGACATTAAGACACTTGCAAAGCTTGCTTTATCAGATCCTAACAAATCCCATTTGTTGGAAAGCTATTACATGCTCAAGAGAAGAGAGATTGAAGACTGTGTTACTACAACATCAAGGGTCTCAAGCTTGAGTCCATCGAATAATAATAGTCTTGTAACCATTGAAAGACCTTGTGAAAGCTTAAACCAAAACTTCTCAGAGACAAGAGGTGTGATGAGAAGCCCGAAAGAAGTGATGAAGATTAGATCAAAGCACACCGAAGAGAATTTAGAGAATAGTGTATCTTCCTTTAAACCTGTGAGCTGTGGTGGACCTCTGGTGTTTAGCTATGAAGATAATGATATTTCTGATCAGGATCTTCTTCTTGATGTGCCGTCGAACGGCTCATTCCCTCAAGCAGAGCTTCTAAACATGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASXH GATA RPN13_C

Protein Analysis

470

Amino Acids

52.6

Weight (kDa)

6.02

Isoelectric Point (pI)

60.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	7 - 41	3.5e-14	GATA zinc finger
ASXH	PF13919	234 - 325	1.5e-10	Asx homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17570 AT4G17570 AT4G17570 AT5G47140
fragaria_vesca	FvH4_5g20240 FvH4_5g20240
malus_domestica	MD04G1052000.v1.1 MD06G1048100.v1.1
prunus_persica	Prupe.5G058300_v2.0.a1 Prupe.5G058300_v2.0.a1 Prupe.5G058300_v2.0.a1
pyrus_communis	pycom04g04570 pycom06g04110
rosa_chinensis	RchiOBHm_Chr7g0205311
rosa_laevigata	RLG00000003389
rosa_multiflora	Rmu_sc0001072.1_g000024 Rmu_ssc0000004.1_g000026
rosa_roxburghii	Rroxscaffold_3G00252480
rosa_rugosa	Rorug07G0089600
rosa_samantha	Rh7AG220300 Rh7BG216400 Rh7CG233100 Rh7DG227200
rosa_wichuraiana	Rw7G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	973
AatII	GACGTC	1 cut(s)	439
AccB7I	CCANNNNNTGG	1 cut(s)	1048
AclWI	GGATC	7 cut(s)	127, 189, 358, 483, 590, 1022, 1356
AcsI	RAATTY	5 cut(s)	287, 683, 811, 970, 1258
AcuI	CTGAAG	3 cut(s)	177, 510, 648
AcyI	GRCGYC	1 cut(s)	436
AfaI	GTAC	2 cut(s)	43, 523
AfiI	CCNNNNNNNGG	3 cut(s)	605, 1048, 1373
AflIII	ACRYGT	1 cut(s)	425
AgeI	ACCGGT	1 cut(s)	296
AgsI	TTSAA	9 cut(s)	223, 304, 461, 778, 790, 916, 992, 1085, 1157
AjuI	GAANNNNNNNTTGG	2 cut(s)	433, 465
AleI	CACNNNNGTG	1 cut(s)	606
Alw21I	GWGCWC	2 cut(s)	382, 613
Alw26I	GTCTC	5 cut(s)	161, 518, 959, 1117, 1187
Alw44I	GTGCAC	1 cut(s)	378
AlwI	GGATC	7 cut(s)	127, 189, 358, 483, 590, 1022, 1356
Ama87I	CYCGRG	1 cut(s)	612
AoxI	GGCC	1 cut(s)	62
ApaLI	GTGCAC	1 cut(s)	378
ApeKI	GCWGC	2 cut(s)	446, 654
ApoI	RAATTY	5 cut(s)	287, 683, 811, 970, 1258
ArsI	GACNNNNNNTTYG	2 cut(s)	720, 752
AsiGI	ACCGGT	1 cut(s)	296
AspS9I	GGNCC	3 cut(s)	14, 62, 1304
AsuHPI	GGTGA	2 cut(s)	173, 211
AsuNHI	GCTAGC	2 cut(s)	329, 632
AvaI	CYCGRG	1 cut(s)	612
AvaII	GGWCC	2 cut(s)	14, 1304
BaeGI	GKGCMC	1 cut(s)	382
BauI	CACGAG	1 cut(s)	150
BbsI	GAAGAC	4 cut(s)	654, 751, 999, 1092
Bbv12I	GWGCWC	2 cut(s)	382, 613
BbvI	GCAGC	2 cut(s)	458, 666
BccI	CCATC	2 cut(s)	947, 1135
BceAI	ACGGC	2 cut(s)	1351, 1390
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BclI	TGATCA	1 cut(s)	1342
BcoDI	GTCTC	5 cut(s)	161, 518, 959, 1117, 1187
BfaI	CTAG	2 cut(s)	330, 633
BfmI	CTRYAG	1 cut(s)	763
BisI	GCNGC	2 cut(s)	447, 655
BlsI	GCNGC	2 cut(s)	448, 656
Bme18I	GGWCC	2 cut(s)	14, 1304
BmeT110I	CYCGRG	1 cut(s)	612
BmgT120I	GGNCC	3 cut(s)	14, 62, 1304
BmtI	GCTAGC	2 cut(s)	333, 636
BpiI	GAAGAC	4 cut(s)	654, 751, 999, 1092
BplI	GAGNNNNNCTC	6 cut(s)	298, 330, 583, 615, 715, 747
BpuEI	CTTGAG	6 cut(s)	717, 840, 1052, 1099, 1141, 1371
BsaBI	GATNNNNATC	1 cut(s)	1347
BsaHI	GRCGYC	1 cut(s)	436
BsaI	GGTCTC	1 cut(s)	1117
BsaWI	WCCGGW	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	3 cut(s)	605, 1048, 1373
Bse118I	RCCGGY	2 cut(s)	76, 296
Bse3DI	GCAATG	2 cut(s)	94, 705
Bse8I	GATNNNNATC	1 cut(s)	1347
BseGI	GGATG	2 cut(s)	325, 787
BseJI	GATNNNNATC	1 cut(s)	1347
BseLI	CCNNNNNNNGG	3 cut(s)	605, 1048, 1373
BseMI	GCAATG	2 cut(s)	94, 705
BseMII	CTCAG	4 cut(s)	162, 618, 901, 1203
BseRI	GAGGAG	1 cut(s)	736
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	458, 666
BshFI	GGCC	1 cut(s)	64
BshTI	ACCGGT	1 cut(s)	296
BsiHKAI	GWGCWC	2 cut(s)	382, 613
BsiHKCI	CYCGRG	1 cut(s)	612
BsiSI	CCGG	2 cut(s)	77, 297
BslFI	GGGAC	2 cut(s)	410, 447
BslI	CCNNNNNNNGG	3 cut(s)	605, 1048, 1373
BsmAI	GTCTC	5 cut(s)	161, 518, 959, 1117, 1187
BsmFI	GGGAC	2 cut(s)	410, 447
BsnI	GGCC	1 cut(s)	64
Bso31I	GGTCTC	1 cut(s)	1117
BsoBI	CYCGRG	1 cut(s)	612
Bsp1286I	GDGCHC	2 cut(s)	382, 613
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	4 cut(s)	163, 617, 900, 1202
BspOI	GCTAGC	2 cut(s)	333, 636
BspPI	GGATC	7 cut(s)	127, 189, 358, 483, 590, 1022, 1356
BspTNI	GGTCTC	1 cut(s)	1117
BsrDI	GCAATG	2 cut(s)	94, 705
BsrFI	RCCGGY	2 cut(s)	76, 296
BssAI	RCCGGY	2 cut(s)	76, 296
BssNI	GRCGYC	1 cut(s)	436
BssSI	CACGAG	1 cut(s)	150
Bst2BI	CACGAG	1 cut(s)	150
Bst4CI	ACNGT	4 cut(s)	29, 199, 268, 1091
Bst6I	CTCTTC	5 cut(s)	147, 612, 713, 1069, 1248
BstACI	GRCGYC	1 cut(s)	436
BstAPI	GCANNNNNTGC	1 cut(s)	1016
BstC8I	GCNNGC	3 cut(s)	331, 634, 1017
BstDEI	CTNAG	6 cut(s)	171, 604, 643, 739, 887, 1189
BstENI	CCTNNNNNAGG	1 cut(s)	603
BstF5I	GGATG	2 cut(s)	325, 787
BstMAI	GTCTC	5 cut(s)	161, 518, 959, 1117, 1187
BstMWI	GCNNNNNNNGC	2 cut(s)	891, 1016
BstNSI	RCATGY	3 cut(s)	429, 898, 1066
BstSFI	CTRYAG	1 cut(s)	763
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	458, 666
BstV2I	GAAGAC	4 cut(s)	654, 751, 999, 1092
BstX2I	RGATCY	4 cut(s)	475, 595, 1027, 1348
BstYI	RGATCY	4 cut(s)	475, 595, 1027, 1348
BsuRI	GGCC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	325, 787
BtsIMutI	CAGTG	2 cut(s)	25, 273
Cac8I	GCNNGC	3 cut(s)	331, 634, 1017
Cfr10I	RCCGGY	2 cut(s)	76, 296
Cfr13I	GGNCC	3 cut(s)	14, 62, 1304
Csp6I	GTAC	2 cut(s)	42, 522
CspAI	ACCGGT	1 cut(s)	296
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	6 cut(s)	146, 426, 575, 895, 1063, 1405
CviQI	GTAC	2 cut(s)	42, 522
DdeI	CTNAG	6 cut(s)	171, 604, 643, 739, 887, 1189
DraI	TTTAAA	1 cut(s)	1285
DrdI	GACNNNNNNGTC	1 cut(s)	973
DseDI	GACNNNNNNGTC	1 cut(s)	973
Eam1104I	CTCTTC	5 cut(s)	147, 612, 713, 1069, 1248
EarI	CTCTTC	5 cut(s)	147, 612, 713, 1069, 1248
Eco31I	GGTCTC	1 cut(s)	1117
Eco47I	GGWCC	2 cut(s)	14, 1304
Eco57I	CTGAAG	3 cut(s)	177, 510, 648
Eco88I	CYCGRG	1 cut(s)	612
EcoNI	CCTNNNNNAGG	1 cut(s)	603
EcoO109I	RGGNCCY	1 cut(s)	14
EcoRI	GAATTC	1 cut(s)	287
FaeI	CATG	6 cut(s)	149, 429, 578, 898, 1066, 1408
FalI	AAGNNNNNCTT	4 cut(s)	525, 557, 1380, 1412
FaqI	GGGAC	2 cut(s)	410, 447
FatI	CATG	6 cut(s)	145, 425, 574, 894, 1062, 1404
FbaI	TGATCA	1 cut(s)	1342
Fnu4HI	GCNGC	2 cut(s)	447, 655
FokI	GGATG	2 cut(s)	332, 794
Fsp4HI	GCNGC	2 cut(s)	447, 655
FspBI	CTAG	2 cut(s)	330, 633
GluI	GCNGC	2 cut(s)	447, 655
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	2 cut(s)	77, 297
Hin1I	GRCGYC	1 cut(s)	436
Hin1II	CATG	6 cut(s)	149, 429, 578, 898, 1066, 1408
HincII	GTYRAC	1 cut(s)	862
HindII	GTYRAC	1 cut(s)	862
HindIII	AAGCTT	3 cut(s)	1013, 1117, 1171
HinfI	GANTC	5 cut(s)	232, 398, 623, 863, 1123
HpaII	CCGG	2 cut(s)	77, 297
HphI	GGTGA	2 cut(s)	173, 211
Hpy166II	GTNNAC	6 cut(s)	44, 130, 380, 755, 862, 1304
Hpy188I	TCNGA	7 cut(s)	370, 529, 628, 890, 1027, 1192, 1342
Hpy188III	TCNNGA	9 cut(s)	254, 304, 317, 348, 614, 878, 1069, 1346, 1358
Hpy8I	GTNNAC	6 cut(s)	44, 130, 380, 755, 862, 1304
Hpy99I	CGWCG	1 cut(s)	1372
HpyAV	CCTTC	4 cut(s)	152, 304, 414, 772
HpyCH4III	ACNGT	4 cut(s)	29, 199, 268, 1091
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	4 cut(s)	87, 380, 983, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	891, 1016
HpyF3I	CTNAG	6 cut(s)	171, 604, 643, 739, 887, 1189
HpySE526I	ACGT	1 cut(s)	436
Hsp92I	GRCGYC	1 cut(s)	436
Hsp92II	CATG	6 cut(s)	149, 429, 578, 898, 1066, 1408
Ksp22I	TGATCA	1 cut(s)	1342
LmnI	GCTCC	2 cut(s)	709, 723
Lsp1109I	GCAGC	2 cut(s)	458, 666
MaeI	CTAG	2 cut(s)	330, 633
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	3 cut(s)	34, 1093, 1147
MflI	RGATCY	4 cut(s)	475, 595, 1027, 1348
MhlI	GDGCHC	2 cut(s)	382, 613
MluCI	AATT	7 cut(s)	287, 683, 811, 845, 911, 970, 1258
MlyI	GAGTC	3 cut(s)	392, 857, 1132
MmeI	TCCRAC	1 cut(s)	1029
MseI	TTAA	5 cut(s)	207, 681, 999, 1175, 1284
MslI	CAYNNNNRTG	4 cut(s)	49, 150, 579, 606
MspI	CCGG	2 cut(s)	77, 297
MwoI	GCNNNNNNNGC	2 cut(s)	891, 1016
NheI	GCTAGC	2 cut(s)	329, 632
NlaIII	CATG	6 cut(s)	149, 429, 578, 898, 1066, 1408
NspI	RCATGY	3 cut(s)	429, 898, 1066
OliI	CACNNNNGTG	1 cut(s)	606
PaeR7I	CTCGAG	1 cut(s)	612
PciI	ACATGT	1 cut(s)	425
PfeI	GAWTC	2 cut(s)	232, 623
PflMI	CCANNNNNTGG	1 cut(s)	1048
PinAI	ACCGGT	1 cut(s)	296
PkrI	GCNGC	2 cut(s)	448, 656
PleI	GAGTC	3 cut(s)	392, 857, 1131
PpsI	GAGTC	3 cut(s)	392, 857, 1131
PpuMI	RGGWCCY	1 cut(s)	14
PscI	ACATGT	1 cut(s)	425
Psp5II	RGGWCCY	1 cut(s)	14
PspPI	GGNCC	3 cut(s)	14, 62, 1304
PspPPI	RGGWCCY	1 cut(s)	14
PsuI	RGATCY	4 cut(s)	475, 595, 1027, 1348
RsaI	GTAC	2 cut(s)	43, 523
RsaNI	GTAC	2 cut(s)	42, 522
RseI	CAYNNNNRTG	4 cut(s)	49, 150, 579, 606
SaqAI	TTAA	5 cut(s)	207, 681, 999, 1175, 1284
SatI	GCNGC	2 cut(s)	447, 655
Sau96I	GGNCC	3 cut(s)	14, 62, 1304
SchI	GAGTC	3 cut(s)	392, 857, 1132
SduI	GDGCHC	2 cut(s)	382, 613
SfcI	CTRYAG	1 cut(s)	763
Sfr274I	CTCGAG	1 cut(s)	612
SinI	GGWCC	2 cut(s)	14, 1304
SlaI	CTCGAG	1 cut(s)	612
SmiMI	CAYNNNNRTG	4 cut(s)	49, 150, 579, 606
SmlI	CTYRAG	7 cut(s)	612, 732, 855, 1067, 1114, 1120, 1386
SmoI	CTYRAG	7 cut(s)	612, 732, 855, 1067, 1114, 1120, 1386
Sse9I	AATT	7 cut(s)	287, 683, 811, 845, 911, 970, 1258
SspMI	CTAG	2 cut(s)	330, 633
TaaI	ACNGT	4 cut(s)	29, 199, 268, 1091
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	6 cut(s)	101, 341, 401, 613, 1130, 1370
TasI	AATT	7 cut(s)	287, 683, 811, 845, 911, 970, 1258
TatI	WGTACW	1 cut(s)	41
TfiI	GAWTC	2 cut(s)	232, 623
Tru1I	TTAA	5 cut(s)	207, 681, 999, 1175, 1284
Tru9I	TTAA	5 cut(s)	207, 681, 999, 1175, 1284
TscAI	CASTG	2 cut(s)	32, 273
TseI	GCWGC	2 cut(s)	446, 654
TspRI	CASTG	2 cut(s)	32, 273
Van91I	CCANNNNNTGG	1 cut(s)	1048
VneI	GTGCAC	1 cut(s)	378
VpaK11BI	GGWCC	2 cut(s)	14, 1304
XagI	CCTNNNNNAGG	1 cut(s)	603
XapI	RAATTY	5 cut(s)	287, 683, 811, 970, 1258
XceI	RCATGY	3 cut(s)	429, 898, 1066
XhoI	CTCGAG	1 cut(s)	612
XspI	CTAG	2 cut(s)	330, 633
ZraI	GACGTC	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.