Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000004.1

Orthogroup ID

OG0007896

Physical Location & Seq

Genomic Coordinates Reverse (-)

99932 .. 102800

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000004.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atggtgtgggactcaacggtaccttctagaaaaaggacctgtgtcggtcgtccaaagcaatctcctgttgaaaagctcacaaaagatctatatactattttacatgaacaacagtcttcttacttctctgggtcttctgaagaggatctactttttgagagtgaaacacctatggtctctgttgagataggacatggaagtgttctcataaggcatcccagctcaatagcccgagaagaggagtctgaagctagctcgctttcagttgataaccggcagtgccatataaatgaggcttattcccattctgcatccctttttgtacataataacaagggtgtaaatatgtccagtactgtgattggaaagatgaatagccctgcaggacacgggatgcaacaagagccactgaaaagggacaagtcacagcatgacaacttccaaatcttgggaaaccataattcaccacttcatcatatagatttgaatgatattgtaaattatgaagagttcatgaggcagttgacaaatgaggagcaacagcaattactgaagcatctatctccagtggatgtcaagtttccttatagcctcagaaatatgtttgatagccctcagttcagagagaacttaacttcctttcagcaactgcttgcagaaggggtctttgatatctccttcccaggggcaaaaactgaagactgtaagactttgaaaaggcttgcattatccaattctttgaaatctaagtgggttgaacgctatcatcttatcaagaagtgtaaaactacctccggaaagtctgttgtctctggatctaacttcaccacatctagtaattttcgacaagtcaagagactgcgggatagtgagactcgaagctttccagatgtaaagattgtgatgaagagccccaaaagggtaatcatgaaggggggctatgaaaacaaggatatcctggactatgatggttcttgctttagtccaaaaagcctctttgctttgcctcctgatggtagctctctcatgctggattccatgagttttgtcgaagaaagttctgaccaggatcttctgctggatattccatccaatggatcctacccccaagcagagcttcttcacccagccttgagttttggctcccaacaagcaagcactagtagtagctcaatatacccacatctactccatccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASXH GATA RPN13_C

Protein Analysis

399

Amino Acids

44.85

Weight (kDa)

6.35

Isoelectric Point (pI)

63.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17570 AT4G17570 AT4G17570 AT5G47140
fragaria_vesca	FvH4_5g20240 FvH4_5g20240
malus_domestica	MD04G1052000.v1.1 MD06G1048100.v1.1
prunus_persica	Prupe.5G058300_v2.0.a1 Prupe.5G058300_v2.0.a1 Prupe.5G058300_v2.0.a1
pyrus_communis	pycom04g04570 pycom06g04110
rosa_chinensis	RchiOBHm_Chr7g0205311
rosa_laevigata	RLG00000003389
rosa_multiflora	Rmu_sc0001072.1_g000024 Rmu_ssc0000004.1_g000026
rosa_roxburghii	Rroxscaffold_3G00252480
rosa_rugosa	Rorug07G0089600
rosa_samantha	Rh7AG220300 Rh7BG216400 Rh7CG233100 Rh7DG227200
rosa_wichuraiana	Rw7G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	1 cut(s)	19
AccB7I	CCANNNNNTGG	2 cut(s)	448, 1094
AccIII	TCCGGA	1 cut(s)	794
AciI	CCGC	1 cut(s)	862
AclWI	GGATC	5 cut(s)	153, 823, 1077, 1092, 1105
AcuI	CTGAAG	4 cut(s)	159, 267, 572, 717
AfaI	GTAC	3 cut(s)	21, 324, 355
AfiI	CCNNNNNNNGG	6 cut(s)	238, 448, 684, 919, 1013, 1094
AgsI	TTSAA	5 cut(s)	71, 487, 715, 742, 758
AhlI	ACTAGT	1 cut(s)	1160
AjnI	CCWGG	3 cut(s)	682, 957, 1065
AjuI	GAANNNNNNNTTGG	2 cut(s)	1101, 1133
AloI	GAACNNNNNNTCC	2 cut(s)	620, 652
AluBI	AGCT	8 cut(s)	76, 222, 251, 255, 882, 1020, 1117, 1170
AluI	AGCT	8 cut(s)	76, 222, 251, 255, 882, 1020, 1117, 1170
Alw26I	GTCTC	4 cut(s)	181, 814, 850, 866
AlwI	GGATC	5 cut(s)	153, 823, 1077, 1092, 1105
AlwNI	CAGNNNCTG	1 cut(s)	649
Ama87I	CYCGRG	1 cut(s)	231
Aor13HI	TCCGGA	1 cut(s)	794
Asp718I	GGTACC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	3 cut(s)	456, 817, 1115
AsuNHI	GCTAGC	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	36
BamHI	GGATCC	1 cut(s)	1097
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	914
BarI	GAAGNNNNNNTAC	2 cut(s)	132, 164
BbsI	GAAGAC	3 cut(s)	108, 126, 705
BccI	CCATC	3 cut(s)	962, 1007, 1096
BciT130I	CCWGG	3 cut(s)	684, 959, 1067
BcoDI	GTCTC	4 cut(s)	181, 814, 850, 866
BcuI	ACTAGT	1 cut(s)	1160
BfaI	CTAG	4 cut(s)	27, 252, 834, 1161
BfmI	CTRYAG	1 cut(s)	381
BglII	AGATCT	1 cut(s)	85
BmcAI	AGTACT	1 cut(s)	355
Bme1390I	CCNGG	3 cut(s)	684, 959, 1067
Bme18I	GGWCC	1 cut(s)	36
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	3 cut(s)	21, 1099, 1144
BmrFI	CCNGG	3 cut(s)	684, 959, 1067
BmsI	GCATC	4 cut(s)	223, 320, 384, 565
BmtI	GCTAGC	1 cut(s)	255
BoxI	GACNNNNGTC	1 cut(s)	41
BpiI	GAAGAC	3 cut(s)	108, 126, 705
BpmI	CTGGAG	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	1153
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	682, 683
BsaWI	WCCGGW	1 cut(s)	794
BsaXI	ACNNNNNCTCC	1 cut(s)	1173
Bsc4I	CCNNNNNNNGG	6 cut(s)	238, 448, 684, 919, 1013, 1094
Bse118I	RCCGGY	1 cut(s)	273
Bse1I	ACTGG	2 cut(s)	351, 566
BseAI	TCCGGA	1 cut(s)	794
BseBI	CCWGG	3 cut(s)	684, 959, 1067
BseDI	CCNNGG	2 cut(s)	682, 683
BseGI	GGATG	6 cut(s)	214, 311, 399, 577, 1088, 1192
BseLI	CCNNNNNNNGG	6 cut(s)	238, 448, 684, 919, 1013, 1094
BseMII	CTCAG	2 cut(s)	607, 629
BseNI	ACTGG	2 cut(s)	351, 566
BseRI	GAGGAG	2 cut(s)	254, 548
BseYI	CCCAGC	2 cut(s)	218, 1126
Bsh1285I	CGRYCG	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	274, 795
BslFI	GGGAC	2 cut(s)	23, 431
BslI	CCNNNNNNNGG	6 cut(s)	238, 448, 684, 919, 1013, 1094
BsmAI	GTCTC	4 cut(s)	181, 814, 850, 866
BsmFI	GGGAC	2 cut(s)	23, 431
Bso31I	GGTCTC	1 cut(s)	181
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	914
Bsp13I	TCCGGA	1 cut(s)	794
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	5 cut(s)	85, 145, 815, 1069, 1097
BspACI	CCGC	1 cut(s)	862
BspCNI	CTCAG	2 cut(s)	606, 628
BspEI	TCCGGA	1 cut(s)	794
BspHI	TCATGA	2 cut(s)	513, 927
BspLI	GGNNCC	3 cut(s)	21, 1099, 1144
BspMAI	CTGCAG	1 cut(s)	385
BspOI	GCTAGC	1 cut(s)	255
BspPI	GGATC	5 cut(s)	153, 823, 1077, 1092, 1105
BspQI	GCTCTTC	1 cut(s)	902
BspT107I	GGYRCC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	273
BsrGI	TGTACA	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	351, 566
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	682, 683
BssMI	GATC	5 cut(s)	85, 145, 815, 1069, 1097
Bst2UI	CCWGG	3 cut(s)	684, 959, 1067
Bst4CI	ACNGT	4 cut(s)	19, 114, 358, 704
Bst6I	CTCTTC	4 cut(s)	135, 231, 501, 902
BstAUI	TGTACA	1 cut(s)	322
BstC8I	GCNNGC	5 cut(s)	253, 257, 654, 723, 1156
BstDEI	CTNAG	3 cut(s)	593, 615, 747
BstF5I	GGATG	6 cut(s)	214, 311, 399, 577, 1088, 1192
BstKTI	GATC	5 cut(s)	88, 148, 818, 1072, 1100
BstMAI	GTCTC	4 cut(s)	181, 814, 850, 866
BstMBI	GATC	5 cut(s)	85, 145, 815, 1069, 1097
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	403
BstNI	CCWGG	3 cut(s)	684, 959, 1067
BstPAI	GACNNNNGTC	1 cut(s)	41
BstSCI	CCNGG	3 cut(s)	682, 957, 1065
BstSFI	CTRYAG	1 cut(s)	381
BstV2I	GAAGAC	3 cut(s)	108, 126, 705
BstX2I	RGATCY	5 cut(s)	85, 145, 815, 1069, 1097
BstYI	RGATCY	5 cut(s)	85, 145, 815, 1069, 1097
BtsCI	GGATG	6 cut(s)	214, 311, 399, 577, 1088, 1192
BtsI	GCAGTG	1 cut(s)	284
BtsIMutI	CAGTG	3 cut(s)	284, 407, 573
Cac8I	GCNNGC	5 cut(s)	253, 257, 654, 723, 1156
CaiI	CAGNNNCTG	1 cut(s)	649
CciI	TCATGA	2 cut(s)	513, 927
Cfr10I	RCCGGY	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	3 cut(s)	20, 323, 354
CviAII	CATG	7 cut(s)	104, 194, 431, 514, 928, 1027, 1039
CviQI	GTAC	3 cut(s)	20, 323, 354
DdeI	CTNAG	3 cut(s)	593, 615, 747
DpnI	GATC	5 cut(s)	87, 147, 817, 1071, 1099
DpnII	GATC	5 cut(s)	85, 145, 815, 1069, 1097
Eam1104I	CTCTTC	4 cut(s)	135, 231, 501, 902
EarI	CTCTTC	4 cut(s)	135, 231, 501, 902
Eco24I	GRGCYC	1 cut(s)	914
Eco31I	GGTCTC	1 cut(s)	181
Eco32I	GATATC	2 cut(s)	673, 955
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	4 cut(s)	159, 267, 572, 717
Eco88I	CYCGRG	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRII	CCWGG	3 cut(s)	682, 957, 1065
EcoRV	GATATC	2 cut(s)	673, 955
EcoT38I	GRGCYC	1 cut(s)	914
FaeI	CATG	7 cut(s)	107, 197, 434, 517, 931, 1030, 1042
FalI	AAGNNNNNCTT	2 cut(s)	1101, 1133
FaqI	GGGAC	2 cut(s)	23, 431
FatI	CATG	7 cut(s)	103, 193, 430, 513, 927, 1026, 1038
FauI	CCCGC	1 cut(s)	855
FokI	GGATG	6 cut(s)	201, 298, 406, 584, 1075, 1179
FriOI	GRGCYC	1 cut(s)	914
FspBI	CTAG	4 cut(s)	27, 252, 834, 1161
GsaI	CCCAGC	2 cut(s)	222, 1130
GsuI	CTGGAG	1 cut(s)	549
HapII	CCGG	2 cut(s)	274, 795
Hin1II	CATG	7 cut(s)	107, 197, 434, 517, 931, 1030, 1042
HincII	GTYRAC	1 cut(s)	525
HindII	GTYRAC	1 cut(s)	525
HindIII	AAGCTT	1 cut(s)	880
HinfI	GANTC	4 cut(s)	11, 242, 874, 1034
HpaII	CCGG	2 cut(s)	274, 795
HphI	GGTGA	3 cut(s)	456, 817, 1115
Hpy166II	GTNNAC	1 cut(s)	525
Hpy188I	TCNGA	5 cut(s)	139, 247, 596, 623, 1063
Hpy188III	TCNNGA	9 cut(s)	27, 514, 775, 795, 813, 853, 887, 928, 1010
Hpy8I	GTNNAC	1 cut(s)	525
HpyAV	CCTTC	4 cut(s)	33, 653, 688, 925
HpyCH4III	ACNGT	4 cut(s)	19, 114, 358, 704
HpyCH4V	TGCA	5 cut(s)	311, 383, 397, 656, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	403
HpyF3I	CTNAG	3 cut(s)	593, 615, 747
Hsp92II	CATG	7 cut(s)	107, 197, 434, 517, 931, 1030, 1042
Kpn2I	TCCGGA	1 cut(s)	794
KpnI	GGTACC	1 cut(s)	23
Kzo9I	GATC	5 cut(s)	85, 145, 815, 1069, 1097
LguI	GCTCTTC	1 cut(s)	902
LmnI	GCTCC	2 cut(s)	535, 1148
LweI	GCATC	4 cut(s)	223, 320, 384, 565
MaeI	CTAG	4 cut(s)	27, 252, 834, 1161
MaeIII	GTNAC	1 cut(s)	423
MalI	GATC	5 cut(s)	87, 147, 817, 1071, 1099
MboI	GATC	5 cut(s)	85, 145, 815, 1069, 1097
MflI	RGATCY	5 cut(s)	85, 145, 815, 1069, 1097
MhlI	GDGCHC	1 cut(s)	914
MluCI	AATT	5 cut(s)	460, 499, 545, 733, 838
MlyI	GAGTC	3 cut(s)	5, 251, 868
MroI	TCCGGA	1 cut(s)	794
MseI	TTAA	1 cut(s)	632
MslI	CAYNNNNRTG	2 cut(s)	198, 288
MspI	CCGG	2 cut(s)	274, 795
MspR9I	CCNGG	3 cut(s)	684, 959, 1067
MvaI	CCWGG	3 cut(s)	684, 959, 1067
MwoI	GCNNNNNNNGC	1 cut(s)	403
NdeII	GATC	5 cut(s)	85, 145, 815, 1069, 1097
NheI	GCTAGC	1 cut(s)	251
NlaIII	CATG	7 cut(s)	107, 197, 434, 517, 931, 1030, 1042
NlaIV	GGNNCC	3 cut(s)	21, 1099, 1144
NmuCI	GTSAC	1 cut(s)	423
PagI	TCATGA	2 cut(s)	513, 927
PasI	CCCWGGG	1 cut(s)	683
PciSI	GCTCTTC	1 cut(s)	902
PfeI	GAWTC	1 cut(s)	1034
PflMI	CCANNNNNTGG	2 cut(s)	448, 1094
PfoI	TCCNGGA	1 cut(s)	957
PleI	GAGTC	3 cut(s)	5, 250, 868
PpsI	GAGTC	3 cut(s)	5, 250, 868
PpuMI	RGGWCCY	1 cut(s)	36
PshAI	GACNNNNGTC	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	3 cut(s)	682, 957, 1065
PspFI	CCCAGC	2 cut(s)	218, 1126
PspGI	CCWGG	3 cut(s)	682, 957, 1065
PspN4I	GGNNCC	3 cut(s)	21, 1099, 1144
PspPI	GGNCC	1 cut(s)	36
PspPPI	RGGWCCY	1 cut(s)	36
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	649
PsuI	RGATCY	5 cut(s)	85, 145, 815, 1069, 1097
RsaI	GTAC	3 cut(s)	21, 324, 355
RsaNI	GTAC	3 cut(s)	20, 323, 354
RseI	CAYNNNNRTG	2 cut(s)	198, 288
SapI	GCTCTTC	1 cut(s)	902
SaqAI	TTAA	1 cut(s)	632
Sau3AI	GATC	5 cut(s)	85, 145, 815, 1069, 1097
Sau96I	GGNCC	1 cut(s)	36
SbfI	CCTGCAGG	1 cut(s)	385
ScaI	AGTACT	1 cut(s)	355
SchI	GAGTC	3 cut(s)	5, 251, 868
ScrFI	CCNGG	3 cut(s)	684, 959, 1067
SdaI	CCTGCAGG	1 cut(s)	385
SduI	GDGCHC	1 cut(s)	914
SfaNI	GCATC	4 cut(s)	223, 320, 384, 565
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	2 cut(s)	198, 288
SmlI	CTYRAG	1 cut(s)	1132
SmoI	CTYRAG	1 cut(s)	1132
SpeI	ACTAGT	1 cut(s)	1160
Sse8387I	CCTGCAGG	1 cut(s)	385
Sse9I	AATT	5 cut(s)	460, 499, 545, 733, 838
SsiI	CCGC	1 cut(s)	862
SspMI	CTAG	4 cut(s)	27, 252, 834, 1161
StyD4I	CCNGG	3 cut(s)	682, 957, 1065
TaaI	ACNGT	4 cut(s)	19, 114, 358, 704
TaqI	TCGA	3 cut(s)	844, 877, 1050
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	5 cut(s)	460, 499, 545, 733, 838
TatI	WGTACW	2 cut(s)	322, 353
TfiI	GAWTC	1 cut(s)	1034
Tru1I	TTAA	1 cut(s)	632
Tru9I	TTAA	1 cut(s)	632
TscAI	CASTG	3 cut(s)	284, 414, 573
TseFI	GTSAC	1 cut(s)	423
Tsp45I	GTSAC	1 cut(s)	423
TspDTI	ATGAA	8 cut(s)	120, 386, 461, 502, 519, 920, 944, 957
TspRI	CASTG	3 cut(s)	284, 414, 573
Van91I	CCANNNNNTGG	2 cut(s)	448, 1094
VpaK11BI	GGWCC	1 cut(s)	36
XbaI	TCTAGA	1 cut(s)	26
XspI	CTAG	4 cut(s)	27, 252, 834, 1161
ZrmI	AGTACT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.