AT4G17810

C2H2-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0013038
Physical Location & Seq
Forward (+)
9906821 .. 9908027
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17810.1

Sequence Viewer

Length: 615 bp
ATGAACGGTGGTGCATGGATGTGGAACCCTAACAAAATTGAAGAATTGGAGGATGATGATGAATCTTGGGAAGTCAAAGCCTTTGAGCAAGACACTAAAGGCAACATCTCTGGTACCACTTGGCCTCCAAGATCTTACACTTGCAATTTCTGCCGCCGTGAGTTCCGTTCTGCTCAAGCCTTAGGCGGTCACATGAATGTCCACCGCCGTGACCGCGCCTCATCTAGGGCTCATCAAGGTTCCACCGTTGCGGCTGCGGCTAGAAGCGGCCACGGGGGGATGTTACTCAATTCTTGTGCTCCGCCGTTGCCTACAACGACACTTATAATACAATCCACGGCGAGTAACATTGAAGGTTTGTCCCATTTCTACCAACTGCAAAACCCTAGTGGCATTTTTGGTAATTCTGGTGACATGGTGAATCTTTATGGTACGACTTCGTTTCCTCCGAGCAACCTTCCGTTTTCAATGTTGAATTCTCCAGTAGAAGTTCCTCCTCGGCTTATTGAATATTCGACAGGAGATGATGAGAGCATTGGCTCGATGAAAGAAGCGACAGGAACATCAGTGGATGAGCTTGATCTTGAACTTCGGCTAGGGCACCATCCACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

204

Amino Acids

22.28

Weight (kDa)

5.17

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17810 AT4G17810
fragaria_vesca FvH4_5g21910 FvH4_5g21930
malus_domestica MD06G1033300.v1.1 MD16G1275500.v1.1
prunus_persica Prupe.5G038200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209451
rosa_laevigata RLG00000003135
rosa_multiflora Rmu_co8408129.1_g000001 Rmu_sc0007059.1_g000004
rosa_roxburghii Rroxscaffold_3G00249450
rosa_rugosa Rorug07G0113000
rosa_samantha Rh7AG246900 Rh7BG242000 Rh7CG262500 Rh7DG253200
rosa_wichuraiana Rw7G020870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
Acc65I GGTACC 1 cut(s) 113
AccB1I GGYRCC 2 cut(s) 113, 600
AccII CGCG 1 cut(s) 216
AciI CCGC 8 cut(s) 154, 186, 205, 214, 251, 257, 267, 302
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 1 cut(s) 475
AfaI GTAC 2 cut(s) 115, 433
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 6 cut(s) 41, 353, 468, 475, 509, 587
AleI CACNNNNGTG 1 cut(s) 207
AluBI AGCT 1 cut(s) 577
AluI AGCT 1 cut(s) 577
Alw21I GWGCWC 1 cut(s) 301
AoxI GGCC 2 cut(s) 122, 268
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 475
Asp718I GGTACC 1 cut(s) 113
AspLEI GCGC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 422, 430
AxyI CCTNAGG 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 603
BanI GGYRCC 2 cut(s) 113, 600
BanII GRGCYC 1 cut(s) 232
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 612
BceAI ACGGC 4 cut(s) 141, 192, 289, 354
BfaI CTAG 4 cut(s) 225, 261, 387, 596
BglII AGATCT 1 cut(s) 131
BisI GCNGC 5 cut(s) 154, 252, 255, 258, 268
BlsI GCNGC 5 cut(s) 155, 253, 256, 259, 269
BmiI GGNNCC 4 cut(s) 26, 115, 241, 602
BpmI CTGGAG 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 159
BsaJI CCNNGG 3 cut(s) 271, 336, 497
BsaXI ACNNNNNCTCC 2 cut(s) 109, 139
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 482
Bse21I CCTNAGG 1 cut(s) 181
BseDI CCNNGG 3 cut(s) 271, 336, 497
BseGI GGATG 5 cut(s) 24, 58, 285, 577, 604
BseLI CCNNNNNNNGG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 482
BseRI GAGGAG 1 cut(s) 486
BseSI GKGCMC 1 cut(s) 603
BseXI GCAGC 1 cut(s) 241
Bsh1236I CGCG 1 cut(s) 216
BshFI GGCC 2 cut(s) 124, 270
BshNI GGYRCC 2 cut(s) 113, 600
BsiHKAI GWGCWC 1 cut(s) 301
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 346
BsnI GGCC 2 cut(s) 124, 270
Bsp1286I GDGCHC 3 cut(s) 232, 301, 603
Bsp143I GATC 2 cut(s) 131, 580
BspACI CCGC 8 cut(s) 154, 186, 205, 214, 251, 257, 267, 302
BspANI GGCC 2 cut(s) 124, 270
BspFNI CGCG 1 cut(s) 216
BspLI GGNNCC 4 cut(s) 26, 115, 241, 602
BspT107I GGYRCC 2 cut(s) 113, 600
BsrI ACTGG 1 cut(s) 482
BssECI CCNNGG 3 cut(s) 271, 336, 497
BssMI GATC 2 cut(s) 131, 580
Bst4CI ACNGT 3 cut(s) 8, 247, 612
BstAPI GCANNNNNTGC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 181
BstDSI CCRYGG 2 cut(s) 271, 336
BstENI CCTNNNNNAGG 1 cut(s) 223
BstF5I GGATG 5 cut(s) 24, 58, 285, 577, 604
BstFNI CGCG 1 cut(s) 216
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 2 cut(s) 134, 583
BstMBI GATC 2 cut(s) 131, 580
BstMWI GCNNNNNNNGC 3 cut(s) 150, 213, 257
BstSLI GKGCMC 1 cut(s) 603
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
Bsu36I CCTNAGG 1 cut(s) 181
BsuRI GGCC 2 cut(s) 124, 270
BtgI CCRYGG 2 cut(s) 271, 336
BtsCI GGATG 5 cut(s) 24, 58, 285, 577, 604
BtsIMutI CAGTG 1 cut(s) 573
CfoI GCGC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 114, 432
CviAII CATG 3 cut(s) 15, 193, 415
CviQI GTAC 2 cut(s) 114, 432
DdeI CTNAG 1 cut(s) 181
DpnI GATC 2 cut(s) 133, 582
DpnII GATC 2 cut(s) 131, 580
EaeI YGGCCR 1 cut(s) 268
EciI GGCGGA 1 cut(s) 291
Eco24I GRGCYC 1 cut(s) 232
Eco81I CCTNAGG 1 cut(s) 181
EcoNI CCTNNNNNAGG 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 232
FaeI CATG 3 cut(s) 18, 196, 418
FaiI YATR 5 cut(s) 16, 194, 326, 416, 429
FaqI GGGAC 1 cut(s) 346
FatI CATG 3 cut(s) 14, 192, 414
Fnu4HI GCNGC 5 cut(s) 154, 252, 255, 258, 268
FokI GGATG 5 cut(s) 31, 65, 292, 584, 591
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 5 cut(s) 154, 252, 255, 258, 268
FspBI CTAG 4 cut(s) 225, 261, 387, 596
GlaI GCGC 1 cut(s) 217
GluI GCNGC 5 cut(s) 154, 252, 255, 258, 268
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 2 cut(s) 124, 270
HhaI GCGC 1 cut(s) 218
Hin1II CATG 3 cut(s) 18, 196, 418
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HinfI GANTC 2 cut(s) 62, 421
HphI GGTGA 2 cut(s) 422, 430
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 1 cut(s) 450
Hpy188III TCNNGA 1 cut(s) 584
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 347, 467
HpyCH4III ACNGT 3 cut(s) 8, 247, 612
HpyCH4V TGCA 3 cut(s) 14, 144, 379
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 213, 257
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 3 cut(s) 18, 196, 418
HspAI GCGC 1 cut(s) 216
KpnI GGTACC 1 cut(s) 117
Kzo9I GATC 2 cut(s) 131, 580
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 5 cut(s) 96, 393, 495, 504, 543
Lsp1109I GCAGC 1 cut(s) 241
MaeI CTAG 4 cut(s) 225, 261, 387, 596
MaeIII GTNAC 5 cut(s) 188, 209, 282, 344, 410
MalI GATC 2 cut(s) 133, 582
MboI GATC 2 cut(s) 131, 580
MboII GAAGA 1 cut(s) 53
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 3 cut(s) 232, 301, 603
MluCI AATT 6 cut(s) 36, 44, 145, 289, 403, 475
MnlI CCTC 6 cut(s) 43, 135, 229, 456, 504, 507
MslI CAYNNNNRTG 3 cut(s) 19, 195, 207
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 3 cut(s) 150, 213, 257
NdeII GATC 2 cut(s) 131, 580
NlaIII CATG 3 cut(s) 18, 196, 418
NlaIV GGNNCC 4 cut(s) 26, 115, 241, 602
NmeAIII GCCGAG 1 cut(s) 478
NmuCI GTSAC 3 cut(s) 188, 209, 410
OliI CACNNNNGTG 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 446
PfeI GAWTC 2 cut(s) 62, 421
PkrI GCNGC 5 cut(s) 155, 253, 256, 259, 269
PsiI TTATAA 1 cut(s) 326
PspN4I GGNNCC 4 cut(s) 26, 115, 241, 602
PsuI RGATCY 1 cut(s) 131
RsaI GTAC 2 cut(s) 115, 433
RsaNI GTAC 2 cut(s) 114, 432
RseI CAYNNNNRTG 3 cut(s) 19, 195, 207
SatI GCNGC 5 cut(s) 154, 252, 255, 258, 268
Sau3AI GATC 2 cut(s) 131, 580
SduI GDGCHC 3 cut(s) 232, 301, 603
SetI ASST 4 cut(s) 241, 358, 459, 579
SmiMI CAYNNNNRTG 3 cut(s) 19, 195, 207
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 6 cut(s) 36, 44, 145, 289, 403, 475
SsiI CCGC 8 cut(s) 154, 186, 205, 214, 251, 257, 267, 302
SspI AATATT 1 cut(s) 512
SspMI CTAG 4 cut(s) 225, 261, 387, 596
TaaI ACNGT 3 cut(s) 8, 247, 612
TaqI TCGA 2 cut(s) 515, 542
TasI AATT 6 cut(s) 36, 44, 145, 289, 403, 475
TauI GCSGC 4 cut(s) 156, 254, 260, 270
TfiI GAWTC 2 cut(s) 62, 421
TscAI CASTG 1 cut(s) 573
TseFI GTSAC 3 cut(s) 188, 209, 410
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 3 cut(s) 188, 209, 410
TspDTI ATGAA 4 cut(s) 17, 75, 209, 560
TspGWI ACGGA 2 cut(s) 155, 450
TspRI CASTG 1 cut(s) 573
XagI CCTNNNNNAGG 1 cut(s) 223
XapI RAATTY 1 cut(s) 475
XspI CTAG 4 cut(s) 225, 261, 387, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.