Rorug07G0113000

transcriptional regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0013038
Physical Location & Seq
Forward (+)
8844336 .. 8844836
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0113000.1

Sequence Viewer

Length: 501 bp
ATGACTCACGCCAATAGATTTGTCTTGCTTCGGGAATCTGCAGAGGATACAGAATTGGACATCTTGGATGCTTCAAATGAGCTTGCTTTCTTCCTGGCCAGGGCCGTGATTGATGATGTGTTGGCTCCGCTGAATTTGGAAGAAATTGGCAGCAGGTTACCGCCAAATTGCAGCGCAACTGAGACGGTGCAAATGGCTCAGTCACTGGTTTCTGTGCATCATGCTGGTGAATATGTGGGGCAGTACAAGTCCATAATTCAGGAATACTTTTTCTCGGATGATATTCCTGTGCTCATTCAAAGCCTTAAAGATCTTGCAGTACCCGAGCGTAATCCCATTTGTGTGAAGAAGCTGATCATACTTGCAATGGATGGAAAGAACCGTGAAAAGGAAATGGCTTCCGTTCTAGCTACTTTCTCCCCTTCATTAATGGATTTGTCGACTCCTGAGGATTCAGAATTGGGCATCTTGGATGCTTCAAATGAGTGTGCTCTCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

166

Amino Acids

18.32

Weight (kDa)

4.45

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 82 - 137 4.2e-08 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17810 AT4G17810
fragaria_vesca FvH4_5g21910 FvH4_5g21930
malus_domestica MD06G1033300.v1.1 MD16G1275500.v1.1
prunus_persica Prupe.5G038200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209451
rosa_laevigata RLG00000003135
rosa_multiflora Rmu_co8408129.1_g000001 Rmu_sc0007059.1_g000004
rosa_roxburghii Rroxscaffold_3G00249450
rosa_rugosa Rorug07G0113000
rosa_samantha Rh7AG246900 Rh7BG242000 Rh7CG262500 Rh7DG253200
rosa_wichuraiana Rw7G020870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 144
AccI GTMKAC 1 cut(s) 440
AciI CCGC 3 cut(s) 128, 161, 496
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 2 cut(s) 245, 321
AfiI CCNNNNNNNGG 2 cut(s) 100, 388
AgsI TTSAA 3 cut(s) 75, 299, 480
AjnI CCWGG 2 cut(s) 93, 98
AluBI AGCT 3 cut(s) 82, 352, 410
AluI AGCT 3 cut(s) 82, 352, 410
Alw21I GWGCWC 2 cut(s) 294, 493
Alw26I GTCTC 1 cut(s) 176
AlwNI CAGNNNCTG 1 cut(s) 205
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 2 cut(s) 96, 102
ApeKI GCWGC 2 cut(s) 150, 171
ApoI RAATTY 1 cut(s) 133
AseI ATTAAT 1 cut(s) 428
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 323
AxyI CCTNAGG 1 cut(s) 447
BalI TGGCCA 1 cut(s) 98
Bbv12I GWGCWC 2 cut(s) 294, 493
BbvI GCAGC 2 cut(s) 162, 183
BccI CCATC 1 cut(s) 365
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 2 cut(s) 95, 100
BciVI GTATCC 1 cut(s) 40
BclI TGATCA 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 1 cut(s) 407
BfmI CTRYAG 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 144
BfuI GTATCC 1 cut(s) 40
BglII AGATCT 1 cut(s) 310
BisI GCNGC 2 cut(s) 151, 172
BlsI GCNGC 2 cut(s) 152, 173
Bme1390I CCNGG 2 cut(s) 95, 100
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 102
BmiI GGNNCC 1 cut(s) 126
BmrFI CCNGG 2 cut(s) 95, 100
BmsI GCATC 4 cut(s) 58, 226, 463, 474
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 388
Bse1I ACTGG 1 cut(s) 210
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 372
BseBI CCWGG 2 cut(s) 95, 100
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 4 cut(s) 73, 283, 376, 478
BseLI CCNNNNNNNGG 2 cut(s) 100, 388
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 3 cut(s) 171, 212, 438
BseNI ACTGG 1 cut(s) 210
BseXI GCAGC 2 cut(s) 162, 183
BshFI GGCC 2 cut(s) 98, 104
BsiHKAI GWGCWC 2 cut(s) 294, 493
BsiHKCI CYCGRG 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 100, 388
BsmAI GTCTC 1 cut(s) 176
BsmBI CGTCTC 1 cut(s) 176
BsnI GGCC 2 cut(s) 98, 104
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 2 cut(s) 294, 493
Bsp143I GATC 2 cut(s) 310, 354
BspACI CCGC 3 cut(s) 128, 161, 496
BspANI GGCC 2 cut(s) 98, 104
BspCNI CTCAG 3 cut(s) 172, 211, 439
BspLI GGNNCC 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 43
BspMI ACCTGC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 372
BsrI ACTGG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 2 cut(s) 310, 354
Bst2UI CCWGG 2 cut(s) 95, 100
Bst4CI ACNGT 2 cut(s) 187, 383
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 3 cut(s) 180, 198, 447
BstEII GGTNACC 1 cut(s) 156
BstF5I GGATG 4 cut(s) 73, 283, 376, 478
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 2 cut(s) 313, 357
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 2 cut(s) 310, 354
BstNI CCWGG 2 cut(s) 95, 100
BstPI GGTNACC 1 cut(s) 156
BstSCI CCNGG 2 cut(s) 93, 98
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 162, 183
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
Bsu36I CCTNAGG 1 cut(s) 447
BsuI GTATCC 1 cut(s) 40
BsuRI GGCC 2 cut(s) 98, 104
BtsCI GGATG 4 cut(s) 73, 283, 376, 478
BtsIMutI CAGTG 1 cut(s) 203
BveI ACCTGC 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 205
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 102
Csp6I GTAC 2 cut(s) 244, 320
CviAII CATG 1 cut(s) 221
CviJI RGCY 9 cut(s) 82, 98, 104, 125, 197, 303, 352, 398, 410
CviKI_1 RGCY 9 cut(s) 82, 98, 104, 125, 197, 303, 352, 398, 410
CviQI GTAC 2 cut(s) 244, 320
DdeI CTNAG 3 cut(s) 180, 198, 447
DpnI GATC 2 cut(s) 312, 356
DpnII GATC 2 cut(s) 310, 354
EaeI YGGCCR 1 cut(s) 96
Eco81I CCTNAGG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 323
Eco91I GGTNACC 1 cut(s) 156
EcoO65I GGTNACC 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 93, 98
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 1 cut(s) 224
FaiI YATR 4 cut(s) 222, 234, 254, 359
FatI CATG 1 cut(s) 220
FbaI TGATCA 1 cut(s) 354
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 2 cut(s) 151, 172
FokI GGATG 4 cut(s) 80, 290, 383, 485
Fsp4HI GCNGC 2 cut(s) 151, 172
FspBI CTAG 1 cut(s) 407
GlaI GCGC 1 cut(s) 175
GluI GCNGC 2 cut(s) 151, 172
HaeIII GGCC 2 cut(s) 98, 104
HhaI GCGC 1 cut(s) 176
Hin1II CATG 1 cut(s) 224
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HinfI GANTC 4 cut(s) 4, 35, 442, 452
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 2 cut(s) 277, 457
Hpy188III TCNNGA 3 cut(s) 32, 260, 446
Hpy8I GTNNAC 1 cut(s) 441
HpyAV CCTTC 1 cut(s) 432
HpyCH4III ACNGT 2 cut(s) 187, 383
HpyCH4V TGCA 6 cut(s) 41, 171, 190, 217, 317, 365
HpyF3I CTNAG 3 cut(s) 180, 198, 447
Hsp92II CATG 1 cut(s) 224
HspAI GCGC 1 cut(s) 174
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 2 cut(s) 310, 354
LmnI GCTCC 1 cut(s) 130
Lsp1109I GCAGC 2 cut(s) 162, 183
LweI GCATC 4 cut(s) 58, 226, 463, 474
MaeI CTAG 1 cut(s) 407
MaeIII GTNAC 2 cut(s) 156, 201
MalI GATC 2 cut(s) 312, 356
MboI GATC 2 cut(s) 310, 354
MboII GAAGA 3 cut(s) 82, 152, 358
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 2 cut(s) 294, 493
MlsI TGGCCA 1 cut(s) 98
MluCI AATT 6 cut(s) 53, 133, 144, 166, 255, 458
MluNI TGGCCA 1 cut(s) 98
MlyI GAGTC 1 cut(s) 436
MnlI CCTC 2 cut(s) 37, 442
Mox20I TGGCCA 1 cut(s) 98
MscI TGGCCA 1 cut(s) 98
MseI TTAA 2 cut(s) 306, 428
MslI CAYNNNNRTG 2 cut(s) 225, 341
Msp20I TGGCCA 1 cut(s) 98
MspA1I CMGCKG 2 cut(s) 130, 498
MspR9I CCNGG 2 cut(s) 95, 100
MvaI CCWGG 2 cut(s) 95, 100
NdeII GATC 2 cut(s) 310, 354
NlaIII CATG 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 201
PfeI GAWTC 2 cut(s) 35, 452
PkrI GCNGC 2 cut(s) 152, 173
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PshBI ATTAAT 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 93, 98
PspEI GGTNACC 1 cut(s) 156
PspGI CCWGG 2 cut(s) 93, 98
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 102
PstI CTGCAG 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 205
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 2 cut(s) 245, 321
RsaNI GTAC 2 cut(s) 244, 320
RseI CAYNNNNRTG 2 cut(s) 225, 341
SalI GTCGAC 1 cut(s) 439
SaqAI TTAA 2 cut(s) 306, 428
SatI GCNGC 2 cut(s) 151, 172
Sau3AI GATC 2 cut(s) 310, 354
Sau96I GGNCC 1 cut(s) 102
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 2 cut(s) 95, 100
SduI GDGCHC 2 cut(s) 294, 493
SetI ASST 4 cut(s) 84, 158, 354, 412
SfaNI GCATC 4 cut(s) 58, 226, 463, 474
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 2 cut(s) 225, 341
Sse9I AATT 6 cut(s) 53, 133, 144, 166, 255, 458
SsiI CCGC 3 cut(s) 128, 161, 496
SspMI CTAG 1 cut(s) 407
StyD4I CCNGG 2 cut(s) 93, 98
TaaI ACNGT 2 cut(s) 187, 383
TaqI TCGA 1 cut(s) 440
TasI AATT 6 cut(s) 53, 133, 144, 166, 255, 458
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 2 cut(s) 35, 452
Tru1I TTAA 2 cut(s) 306, 428
Tru9I TTAA 2 cut(s) 306, 428
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 1 cut(s) 201
TseI GCWGC 2 cut(s) 150, 171
Tsp45I GTSAC 1 cut(s) 201
TspDTI ATGAA 1 cut(s) 414
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 1 cut(s) 210
VspI ATTAAT 1 cut(s) 428
XapI RAATTY 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 440
XspI CTAG 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.