FvH4_5g21910

transcriptional regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013038
Physical Location & Seq
Reverse (-)
13261597 .. 13262662
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21910.t1

Sequence Viewer

Length: 720 bp
ATGGCTAAGCTTAGCCTTCTCTCCTTGACCCAACTCCAAAAATTAGCACCGTCATCGGCGCAGAATCCTCAATCAAACTCTAGATCAATTTGGATGTGGAACCCTAAGCAAGCGCAAGATCAAGAAGACGACTCATGGGAAGTGAGGGCCTTTGCAGAGGACACCGGAAACGTGATGGGAACCACATGGCCGCCGAGGTCTTACACCTGCACATTTTGCCGGAGGGAATTCCGGTCAGCTCAGGCCCTCGGCGGCCACATGAACGTGCACCGCCGCGACCGGGCGCGCCTCCACCAAGTGCAGCACCCCAGCTCAATCTCAATCAACCCATCTGCCATCTCCTCTTCCAGTTCCTCATTCATAATCCCAACTCAAGAGTTCCTCGCCGCCAACGGCGGATTGTGCCTTCTCTACCAATTCTCGGACCCTAATAATGGAGCCTTCACTACTAGTGCTGTTACTGCTCCAACTGCACCTTTGCTTAACAACATTGTTGAGTCTTCTTCAGTACCCTCTAGTCTACTCGCCCCCAATCCACTCCATGACTACTTAATGACGTCATCACCTAGTACTCTTGTGGGGCCTCATGGAGCTTCCAATTCTAGAAATAATTCTCATTGTCAAGACGCAAAACGATCAGCAAACGAAGATCAACCTTCGAGGTCTGGGGTTGAAGATATTGAAGAGCTTGATTTAGAGCTCCGGCTCGGTCCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

240

Amino Acids

26.05

Weight (kDa)

5.95

Isoelectric Point (pI)

64.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 68 - 92 7.9e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17810 AT4G17810
fragaria_vesca FvH4_5g21910 FvH4_5g21930
malus_domestica MD06G1033300.v1.1 MD16G1275500.v1.1
prunus_persica Prupe.5G038200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209451
rosa_laevigata RLG00000003135
rosa_multiflora Rmu_co8408129.1_g000001 Rmu_sc0007059.1_g000004
rosa_roxburghii Rroxscaffold_3G00249450
rosa_rugosa Rorug07G0113000
rosa_samantha Rh7AG246900 Rh7BG242000 Rh7CG262500 Rh7DG253200
rosa_wichuraiana Rw7G020870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 215
AatII GACGTC 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 215
AccI GTMKAC 1 cut(s) 520
AccII CGCG 2 cut(s) 276, 286
AciI CCGC 6 cut(s) 191, 252, 271, 274, 387, 396
AcoI YGGCCR 2 cut(s) 188, 253
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 489
AcyI GRCGYC 1 cut(s) 557
AdeI CACNNNGTG 1 cut(s) 298
AfaI GTAC 2 cut(s) 510, 571
AfiI CCNNNNNNNGG 3 cut(s) 280, 421, 434
AgsI TTSAA 2 cut(s) 674, 683
AhlI ACTAGT 1 cut(s) 449
AluBI AGCT 6 cut(s) 10, 239, 312, 593, 688, 700
AluI AGCT 6 cut(s) 10, 239, 312, 593, 688, 700
Alw21I GWGCWC 2 cut(s) 270, 702
Alw44I GTGCAC 1 cut(s) 266
AoxI GGCC 5 cut(s) 147, 188, 243, 253, 581
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 227
AscI GGCGCGCC 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 610
AspLEI GCGC 4 cut(s) 61, 115, 286, 288
AspS9I GGNCC 5 cut(s) 147, 244, 424, 581, 710
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 555
AvaII GGWCC 2 cut(s) 424, 710
BaeGI GKGCMC 1 cut(s) 270
BanII GRGCYC 1 cut(s) 702
BbsI GAAGAC 2 cut(s) 132, 492
Bbv12I GWGCWC 2 cut(s) 270, 702
BbvI GCAGC 1 cut(s) 313
BccI CCATC 3 cut(s) 169, 337, 344
BceAI ACGGC 1 cut(s) 409
BcgI CGANNNNNNTGC 2 cut(s) 36, 70
BcnI CCSGG 1 cut(s) 281
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 5 cut(s) 81, 450, 516, 567, 603
BfuAI ACCTGC 1 cut(s) 215
BisI GCNGC 5 cut(s) 191, 253, 274, 302, 387
BlpI GCTNAGC 2 cut(s) 6, 11
BlsI GCNGC 5 cut(s) 192, 254, 275, 303, 388
BmcAI AGTACT 1 cut(s) 571
Bme1390I CCNGG 1 cut(s) 281
Bme18I GGWCC 2 cut(s) 424, 710
BmgT120I GGNCC 5 cut(s) 147, 244, 424, 581, 710
BmiI GGNNCC 5 cut(s) 101, 181, 426, 439, 582
BmrFI CCNGG 1 cut(s) 281
BpiI GAAGAC 2 cut(s) 132, 492
Bpu10I CCTNAGC 2 cut(s) 105, 240
Bpu1102I GCTNAGC 2 cut(s) 6, 11
BpuEI CTTGAG 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 557
BsaJI CCNNGG 2 cut(s) 194, 247
BsaWI WCCGGW 2 cut(s) 164, 231
Bsc4I CCNNNNNNNGG 3 cut(s) 280, 421, 434
Bse1I ACTGG 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 194, 247
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 3 cut(s) 280, 421, 434
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 348
BsePI GCGCGC 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 331
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 1 cut(s) 313
BseYI CCCAGC 1 cut(s) 308
BsgI GTGCAG 3 cut(s) 193, 320, 456
Bsh1236I CGCG 2 cut(s) 276, 286
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 5 cut(s) 149, 190, 245, 255, 583
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 2 cut(s) 270, 702
BsiSI CCGG 5 cut(s) 165, 220, 232, 280, 703
BslI CCNNNNNNNGG 3 cut(s) 280, 421, 434
BsnI GGCC 5 cut(s) 149, 190, 245, 255, 583
Bsp1286I GDGCHC 2 cut(s) 270, 702
Bsp143I GATC 4 cut(s) 83, 118, 635, 649
Bsp1720I GCTNAGC 2 cut(s) 6, 11
BspACI CCGC 6 cut(s) 191, 252, 271, 274, 387, 396
BspANI GGCC 5 cut(s) 149, 190, 245, 255, 583
BspCNI CTCAG 1 cut(s) 253
BspFNI CGCG 2 cut(s) 276, 286
BspLI GGNNCC 5 cut(s) 101, 181, 426, 439, 582
BspMI ACCTGC 1 cut(s) 215
BspQI GCTCTTC 1 cut(s) 678
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 2 cut(s) 194, 247
BssHII GCGCGC 1 cut(s) 284
BssMI GATC 4 cut(s) 83, 118, 635, 649
BssNI GRCGYC 1 cut(s) 557
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 2 cut(s) 349, 678
BstACI GRCGYC 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 111, 286
BstDEI CTNAG 4 cut(s) 6, 11, 105, 240
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 2 cut(s) 276, 286
BstHHI GCGC 4 cut(s) 61, 115, 286, 288
BstKTI GATC 4 cut(s) 86, 121, 638, 652
BstMBI GATC 4 cut(s) 83, 118, 635, 649
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 4 cut(s) 216, 402, 461, 470
BstSCI CCNGG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 270
BstUI CGCG 2 cut(s) 276, 286
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 2 cut(s) 132, 492
BsuRI GGCC 5 cut(s) 149, 190, 245, 255, 583
BtsCI GGATG 1 cut(s) 99
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 2 cut(s) 111, 286
CfoI GCGC 4 cut(s) 61, 115, 286, 288
Cfr13I GGNCC 5 cut(s) 147, 244, 424, 581, 710
CseI GACGC 1 cut(s) 635
Csp6I GTAC 2 cut(s) 509, 570
CviAII CATG 5 cut(s) 135, 186, 259, 542, 587
CviQI GTAC 2 cut(s) 509, 570
DdeI CTNAG 4 cut(s) 6, 11, 105, 240
DpnI GATC 4 cut(s) 85, 120, 637, 651
DpnII GATC 4 cut(s) 83, 118, 635, 649
DraIII CACNNNGTG 1 cut(s) 298
EaeI YGGCCR 2 cut(s) 188, 253
Eam1104I CTCTTC 2 cut(s) 349, 678
EarI CTCTTC 2 cut(s) 349, 678
EciI GGCGGA 1 cut(s) 411
Ecl136II GAGCTC 1 cut(s) 700
Eco24I GRGCYC 1 cut(s) 702
Eco47I GGWCC 2 cut(s) 424, 710
Eco53kI GAGCTC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 489
EcoICRI GAGCTC 1 cut(s) 700
EcoO109I RGGNCCY 3 cut(s) 147, 244, 581
EcoRI GAATTC 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 702
FaeI CATG 5 cut(s) 138, 189, 262, 545, 590
FaiI YATR 6 cut(s) 136, 187, 260, 362, 543, 588
FatI CATG 5 cut(s) 134, 185, 258, 541, 586
FblI GTMKAC 1 cut(s) 520
Fnu4HI GCNGC 5 cut(s) 191, 253, 274, 302, 387
FokI GGATG 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 702
Fsp4HI GCNGC 5 cut(s) 191, 253, 274, 302, 387
FspBI CTAG 5 cut(s) 81, 450, 516, 567, 603
GlaI GCGC 4 cut(s) 60, 114, 285, 287
GluI GCNGC 5 cut(s) 191, 253, 274, 302, 387
GsaI CCCAGC 1 cut(s) 312
HaeIII GGCC 5 cut(s) 149, 190, 245, 255, 583
HapII CCGG 5 cut(s) 165, 220, 232, 280, 703
HgaI GACGC 1 cut(s) 635
HhaI GCGC 4 cut(s) 61, 115, 286, 288
Hin1I GRCGYC 1 cut(s) 557
Hin1II CATG 5 cut(s) 138, 189, 262, 545, 590
Hin6I GCGC 4 cut(s) 59, 113, 284, 286
HinP1I GCGC 4 cut(s) 59, 113, 284, 286
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 3 cut(s) 64, 131, 497
HpaII CCGG 5 cut(s) 165, 220, 232, 280, 703
HphI GGTGA 1 cut(s) 555
Hpy166II GTNNAC 2 cut(s) 268, 521
Hpy188I TCNGA 1 cut(s) 424
Hpy188III TCNNGA 6 cut(s) 81, 122, 374, 603, 623, 717
Hpy8I GTNNAC 2 cut(s) 268, 521
HpyAV CCTTC 4 cut(s) 26, 416, 451, 666
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 3 cut(s) 171, 264, 557
HpyCH4V TGCA 5 cut(s) 155, 210, 268, 301, 473
HpyF10VI GCNNNNNNNGC 4 cut(s) 216, 402, 461, 470
HpyF3I CTNAG 4 cut(s) 6, 11, 105, 240
HpySE526I ACGT 3 cut(s) 171, 264, 557
Hsp92I GRCGYC 1 cut(s) 557
Hsp92II CATG 5 cut(s) 138, 189, 262, 545, 590
HspAI GCGC 4 cut(s) 59, 113, 284, 286
Kzo9I GATC 4 cut(s) 83, 118, 635, 649
LguI GCTCTTC 1 cut(s) 678
LmnI GCTCC 4 cut(s) 437, 469, 590, 705
Lsp1109I GCAGC 1 cut(s) 313
MaeI CTAG 5 cut(s) 81, 450, 516, 567, 603
MaeII ACGT 3 cut(s) 171, 264, 557
MaeIII GTNAC 1 cut(s) 457
MalI GATC 4 cut(s) 85, 120, 637, 651
MboI GATC 4 cut(s) 83, 118, 635, 649
MboII GAAGA 7 cut(s) 137, 336, 492, 495, 659, 686, 695
MhlI GDGCHC 2 cut(s) 270, 702
MluCI AATT 6 cut(s) 41, 87, 227, 416, 598, 610
MlyI GAGTC 2 cut(s) 125, 506
MmeI TCCRAC 1 cut(s) 491
MroXI GAANNNNTTC 1 cut(s) 610
MseI TTAA 2 cut(s) 483, 551
MslI CAYNNNNRTG 1 cut(s) 263
MspI CCGG 5 cut(s) 165, 220, 232, 280, 703
MspR9I CCNGG 1 cut(s) 281
MvnI CGCG 2 cut(s) 276, 286
MwoI GCNNNNNNNGC 4 cut(s) 216, 402, 461, 470
NciI CCSGG 1 cut(s) 281
NdeII GATC 4 cut(s) 83, 118, 635, 649
NlaIII CATG 5 cut(s) 138, 189, 262, 545, 590
NlaIV GGNNCC 5 cut(s) 101, 181, 426, 439, 582
NmeAIII GCCGAG 2 cut(s) 219, 228
PalAI GGCGCGCC 1 cut(s) 284
PaqCI CACCTGC 1 cut(s) 215
PauI GCGCGC 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 678
PdmI GAANNNNTTC 1 cut(s) 610
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 5 cut(s) 192, 254, 275, 303, 388
PleI GAGTC 2 cut(s) 125, 505
PpsI GAGTC 2 cut(s) 125, 505
Psp124BI GAGCTC 1 cut(s) 702
PspFI CCCAGC 1 cut(s) 308
PspN4I GGNNCC 5 cut(s) 101, 181, 426, 439, 582
PspPI GGNCC 5 cut(s) 147, 244, 424, 581, 710
PteI GCGCGC 1 cut(s) 284
RsaI GTAC 2 cut(s) 510, 571
RsaNI GTAC 2 cut(s) 509, 570
RseI CAYNNNNRTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 702
SapI GCTCTTC 1 cut(s) 678
SaqAI TTAA 2 cut(s) 483, 551
SatI GCNGC 5 cut(s) 191, 253, 274, 302, 387
Sau3AI GATC 4 cut(s) 83, 118, 635, 649
Sau96I GGNCC 5 cut(s) 147, 244, 424, 581, 710
ScaI AGTACT 1 cut(s) 571
SchI GAGTC 2 cut(s) 125, 506
ScrFI CCNGG 1 cut(s) 281
SduI GDGCHC 2 cut(s) 270, 702
SgsI GGCGCGCC 1 cut(s) 284
SinI GGWCC 2 cut(s) 424, 710
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
SpeI ACTAGT 1 cut(s) 449
Sse9I AATT 6 cut(s) 41, 87, 227, 416, 598, 610
SsiI CCGC 6 cut(s) 191, 252, 271, 274, 387, 396
SspMI CTAG 5 cut(s) 81, 450, 516, 567, 603
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 3 cut(s) 174, 267, 560
TaqI TCGA 1 cut(s) 659
TaqII GACCGA 1 cut(s) 698
TasI AATT 6 cut(s) 41, 87, 227, 416, 598, 610
TatI WGTACW 1 cut(s) 569
TauI GCSGC 4 cut(s) 193, 255, 276, 389
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 2 cut(s) 483, 551
Tru9I TTAA 2 cut(s) 483, 551
TseI GCWGC 1 cut(s) 301
TspDTI ATGAA 2 cut(s) 275, 349
VneI GTGCAC 1 cut(s) 266
VpaK11BI GGWCC 2 cut(s) 424, 710
XapI RAATTY 1 cut(s) 227
XbaI TCTAGA 2 cut(s) 80, 602
XmiI GTMKAC 1 cut(s) 520
XmnI GAANNNNTTC 1 cut(s) 610
XspI CTAG 5 cut(s) 81, 450, 516, 567, 603
ZraI GACGTC 1 cut(s) 558
ZrmI AGTACT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.