Prupe.5G038200_v2.0.a1

transcriptional regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0013038
Physical Location & Seq
Forward (+)
4274141 .. 4274857
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G038200.1

Sequence Viewer

Length: 717 bp
ATGGCTGAGCTTGGCCTTCTCTCCTTGACCGAGCTCCAAAAATTGTCTCTATCACAACAAAACCAATCGCAATTATTAAACCCTAGCTTGCCCCCAAAAGCCTGGATGTGGAACCCTAAGCCAGCTCAAGAACCCGAAGATGACTCGTGGGAAGTGAGAGCCTTTGCGGAGGATACCGGTAATGTAATGGGCACCACTTGGCCTCCAAGGTCTTACACTTGCACATTTTGTAGAAGGGAATTCCGGTCCGCCCAAGCCCTAGGAGGCCACATGAATGTGCACCGCCGTGACCGCGCCCGGCTCCACCAATCTCATCCTCCGATCAACCCGGCATCAGCCTCATCTGCTTCCACTTCCTCATTCATAATCCCAACTCAAGAATTTGTCAATGCAAATGGTGGGTTATGCCTGGTTTACCAATTGCCAAGCCCTAGTAGTATAAATGGTGCATCCTTCAACACTGCCACAACTTTGATGAGCTCAAGTTCACATGGCGTTGAGCAATCACCATCCACTCTGCTTTCAATCTCACCCAATATTCCACCTCATGACTACTTAGCATCAGTTGTGCCACCAGGAACCAATTCCCAATATTGTCACTCAAGCAAATCAGCTGATGATCCGGAACCCTCAACACCTGAGACCGAAAATGGCAATTTTGAAGAGCTTGATTTAGAGCTTCGCCTTGGCCATGGCCGACCAACAGTACCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

239

Amino Acids

25.89

Weight (kDa)

5.43

Isoelectric Point (pI)

65.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17810 AT4G17810
fragaria_vesca FvH4_5g21910 FvH4_5g21930
malus_domestica MD06G1033300.v1.1 MD16G1275500.v1.1
prunus_persica Prupe.5G038200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209451
rosa_laevigata RLG00000003135
rosa_multiflora Rmu_co8408129.1_g000001 Rmu_sc0007059.1_g000004
rosa_roxburghii Rroxscaffold_3G00249450
rosa_rugosa Rorug07G0113000
rosa_samantha Rh7AG246900 Rh7BG242000 Rh7CG262500 Rh7DG253200
rosa_wichuraiana Rw7G020870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AccII CGCG 1 cut(s) 294
AccIII TCCGGA 1 cut(s) 622
AciI CCGC 4 cut(s) 167, 249, 283, 292
AclWI GGATC 1 cut(s) 614
AcoI YGGCCR 2 cut(s) 688, 694
AcsI RAATTY 2 cut(s) 239, 380
AfaI GTAC 1 cut(s) 708
AfiI CCNNNNNNNGG 1 cut(s) 108
AgeI ACCGGT 1 cut(s) 176
AgsI TTSAA 3 cut(s) 457, 525, 662
AjnI CCWGG 3 cut(s) 101, 408, 574
AleI CACNNNNGTG 1 cut(s) 285
AluBI AGCT 8 cut(s) 10, 34, 87, 125, 480, 614, 667, 679
AluI AGCT 8 cut(s) 10, 34, 87, 125, 480, 614, 667, 679
Alw21I GWGCWC 3 cut(s) 36, 282, 482
Alw26I GTCTC 2 cut(s) 51, 635
Alw44I GTGCAC 1 cut(s) 278
AlwI GGATC 1 cut(s) 614
Aor13HI TCCGGA 1 cut(s) 622
AoxI GGCC 5 cut(s) 13, 200, 265, 688, 694
ApaLI GTGCAC 1 cut(s) 278
ApoI RAATTY 2 cut(s) 239, 380
AsiGI ACCGGT 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 583
AspA2I CCTAGG 1 cut(s) 259
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 246
AsuC2I CCSGG 2 cut(s) 298, 329
AsuHPI GGTGA 2 cut(s) 498, 522
AvaII GGWCC 1 cut(s) 246
AvrII CCTAGG 1 cut(s) 259
BaeGI GKGCMC 2 cut(s) 194, 282
BalI TGGCCA 1 cut(s) 690
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 2 cut(s) 36, 482
BauI CACGAG 1 cut(s) 145
Bbv12I GWGCWC 3 cut(s) 36, 282, 482
BccI CCATC 1 cut(s) 517
BceAI ACGGC 1 cut(s) 270
BciT130I CCWGG 3 cut(s) 103, 410, 576
BciVI GTATCC 1 cut(s) 166
BcnI CCSGG 2 cut(s) 298, 329
BcoDI GTCTC 2 cut(s) 51, 635
BfaI CTAG 3 cut(s) 84, 260, 432
BfuI GTATCC 1 cut(s) 166
BlnI CCTAGG 1 cut(s) 259
BlpI GCTNAGC 1 cut(s) 6
Bme1390I CCNGG 5 cut(s) 103, 298, 329, 410, 576
Bme18I GGWCC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 5 cut(s) 113, 193, 302, 580, 627
BmrFI CCNGG 5 cut(s) 103, 298, 329, 410, 576
BmsI GCATC 3 cut(s) 341, 458, 569
Bpu10I CCTNAGC 1 cut(s) 117
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 4 cut(s) 111, 360, 466, 586
BpuMI CCSGG 2 cut(s) 298, 329
BsaI GGTCTC 1 cut(s) 635
BsaJI CCNNGG 4 cut(s) 206, 259, 685, 691
BsaWI WCCGGW 3 cut(s) 176, 243, 622
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 176
BseAI TCCGGA 1 cut(s) 622
BseBI CCWGG 3 cut(s) 103, 410, 576
BseDI CCNNGG 4 cut(s) 206, 259, 685, 691
BseGI GGATG 4 cut(s) 111, 313, 449, 509
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 630
BseSI GKGCMC 2 cut(s) 194, 282
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 5 cut(s) 15, 202, 267, 690, 696
BshNI GGYRCC 1 cut(s) 191
BshTI ACCGGT 1 cut(s) 176
BsiHKAI GWGCWC 3 cut(s) 36, 282, 482
BsiSI CCGG 5 cut(s) 177, 244, 298, 329, 623
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 2 cut(s) 51, 635
BsnI GGCC 5 cut(s) 15, 202, 267, 690, 696
Bso31I GGTCTC 1 cut(s) 635
Bsp1286I GDGCHC 4 cut(s) 36, 194, 282, 482
Bsp13I TCCGGA 1 cut(s) 622
Bsp143I GATC 2 cut(s) 321, 619
Bsp1720I GCTNAGC 1 cut(s) 6
Bsp19I CCATGG 1 cut(s) 691
BspACI CCGC 4 cut(s) 167, 249, 283, 292
BspANI GGCC 5 cut(s) 15, 202, 267, 690, 696
BspCNI CTCAG 1 cut(s) 631
BspEI TCCGGA 1 cut(s) 622
BspFNI CGCG 1 cut(s) 294
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 5 cut(s) 113, 193, 302, 580, 627
BspPI GGATC 1 cut(s) 614
BspQI GCTCTTC 1 cut(s) 657
BspT107I GGYRCC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 635
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 4 cut(s) 206, 259, 685, 691
BssMI GATC 2 cut(s) 321, 619
BssSI CACGAG 1 cut(s) 145
BssT1I CCWWGG 4 cut(s) 206, 259, 685, 691
Bst2BI CACGAG 1 cut(s) 145
Bst2UI CCWGG 3 cut(s) 103, 410, 576
Bst4CI ACNGT 1 cut(s) 706
Bst6I CTCTTC 1 cut(s) 657
BstC8I GCNNGC 2 cut(s) 89, 123
BstDEI CTNAG 4 cut(s) 6, 117, 556, 639
BstDSI CCRYGG 1 cut(s) 691
BstF5I GGATG 4 cut(s) 111, 313, 449, 509
BstFNI CGCG 1 cut(s) 294
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 2 cut(s) 324, 622
BstMAI GTCTC 2 cut(s) 51, 635
BstMBI GATC 2 cut(s) 321, 619
BstMWI GCNNNNNNNGC 2 cut(s) 291, 344
BstNI CCWGG 3 cut(s) 103, 410, 576
BstSCI CCNGG 5 cut(s) 101, 296, 327, 408, 574
BstSLI GKGCMC 2 cut(s) 194, 282
BstUI CGCG 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 102
BsuI GTATCC 1 cut(s) 166
BsuRI GGCC 5 cut(s) 15, 202, 267, 690, 696
BtgI CCRYGG 1 cut(s) 691
BtsCI GGATG 4 cut(s) 111, 313, 449, 509
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 1 cut(s) 459
Cac8I GCNNGC 2 cut(s) 89, 123
CciI TCATGA 1 cut(s) 547
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 1 cut(s) 246
CpoI CGGWCCG 1 cut(s) 246
Csp6I GTAC 1 cut(s) 707
CspAI ACCGGT 1 cut(s) 176
CspI CGGWCCG 1 cut(s) 246
CviAII CATG 4 cut(s) 271, 491, 548, 692
CviQI GTAC 1 cut(s) 707
DdeI CTNAG 4 cut(s) 6, 117, 556, 639
DpnI GATC 2 cut(s) 323, 621
DpnII GATC 2 cut(s) 321, 619
EaeI YGGCCR 2 cut(s) 688, 694
Eam1104I CTCTTC 1 cut(s) 657
EarI CTCTTC 1 cut(s) 657
EciI GGCGGA 1 cut(s) 238
Ecl136II GAGCTC 2 cut(s) 34, 480
Eco130I CCWWGG 4 cut(s) 206, 259, 685, 691
Eco24I GRGCYC 2 cut(s) 36, 482
Eco31I GGTCTC 1 cut(s) 635
Eco47I GGWCC 1 cut(s) 246
Eco53kI GAGCTC 2 cut(s) 34, 480
EcoICRI GAGCTC 2 cut(s) 34, 480
EcoRI GAATTC 1 cut(s) 239
EcoRII CCWGG 3 cut(s) 101, 408, 574
EcoT14I CCWWGG 4 cut(s) 206, 259, 685, 691
EcoT38I GRGCYC 2 cut(s) 36, 482
ErhI CCWWGG 4 cut(s) 206, 259, 685, 691
FaeI CATG 4 cut(s) 274, 494, 551, 695
FaiI YATR 7 cut(s) 272, 365, 406, 440, 492, 549, 693
FatI CATG 4 cut(s) 270, 490, 547, 691
FokI GGATG 4 cut(s) 118, 300, 436, 496
FriOI GRGCYC 2 cut(s) 36, 482
FspBI CTAG 3 cut(s) 84, 260, 432
GlaI GCGC 1 cut(s) 295
HaeIII GGCC 5 cut(s) 15, 202, 267, 690, 696
HapII CCGG 5 cut(s) 177, 244, 298, 329, 623
HhaI GCGC 1 cut(s) 296
Hin1II CATG 4 cut(s) 274, 494, 551, 695
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 1 cut(s) 143
HpaII CCGG 5 cut(s) 177, 244, 298, 329, 623
HphI GGTGA 2 cut(s) 498, 522
Hpy166II GTNNAC 3 cut(s) 280, 415, 488
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 5 cut(s) 128, 377, 548, 623, 714
Hpy8I GTNNAC 3 cut(s) 280, 415, 488
HpyAV CCTTC 3 cut(s) 26, 228, 463
HpyCH4III ACNGT 1 cut(s) 706
HpyCH4V TGCA 4 cut(s) 222, 280, 392, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 344
HpyF3I CTNAG 4 cut(s) 6, 117, 556, 639
Hsp92II CATG 4 cut(s) 274, 494, 551, 695
HspAI GCGC 1 cut(s) 294
Kpn2I TCCGGA 1 cut(s) 622
Kzo9I GATC 2 cut(s) 321, 619
LguI GCTCTTC 1 cut(s) 657
LmnI GCTCC 2 cut(s) 39, 306
LweI GCATC 3 cut(s) 341, 458, 569
MaeI CTAG 3 cut(s) 84, 260, 432
MaeIII GTNAC 2 cut(s) 287, 596
MalI GATC 2 cut(s) 323, 621
MboI GATC 2 cut(s) 321, 619
MboII GAAGA 2 cut(s) 149, 674
MfeI CAATTG 1 cut(s) 419
MhlI GDGCHC 4 cut(s) 36, 194, 282, 482
MlsI TGGCCA 1 cut(s) 690
MluCI AATT 7 cut(s) 41, 71, 239, 380, 419, 583, 655
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 8 cut(s) 163, 213, 257, 327, 349, 367, 555, 640
Mox20I TGGCCA 1 cut(s) 690
MroI TCCGGA 1 cut(s) 622
MroXI GAANNNNTTC 1 cut(s) 583
MscI TGGCCA 1 cut(s) 690
MseI TTAA 1 cut(s) 77
MslI CAYNNNNRTG 3 cut(s) 273, 275, 285
Msp20I TGGCCA 1 cut(s) 690
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 5 cut(s) 177, 244, 298, 329, 623
MspR9I CCNGG 5 cut(s) 103, 298, 329, 410, 576
MunI CAATTG 1 cut(s) 419
MvaI CCWGG 3 cut(s) 103, 410, 576
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 291, 344
NciI CCSGG 2 cut(s) 298, 329
NcoI CCATGG 1 cut(s) 691
NdeII GATC 2 cut(s) 321, 619
NlaIII CATG 4 cut(s) 274, 494, 551, 695
NlaIV GGNNCC 5 cut(s) 113, 193, 302, 580, 627
NmuCI GTSAC 2 cut(s) 287, 596
OliI CACNNNNGTG 1 cut(s) 285
PagI TCATGA 1 cut(s) 547
PciSI GCTCTTC 1 cut(s) 657
PdmI GAANNNNTTC 1 cut(s) 583
PinAI ACCGGT 1 cut(s) 176
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp124BI GAGCTC 2 cut(s) 36, 482
Psp6I CCWGG 3 cut(s) 101, 408, 574
PspGI CCWGG 3 cut(s) 101, 408, 574
PspN4I GGNNCC 5 cut(s) 113, 193, 302, 580, 627
PspPI GGNCC 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 1 cut(s) 708
RsaNI GTAC 1 cut(s) 707
RseI CAYNNNNRTG 3 cut(s) 273, 275, 285
Rsr2I CGGWCCG 1 cut(s) 246
RsrII CGGWCCG 1 cut(s) 246
SacI GAGCTC 2 cut(s) 36, 482
SapI GCTCTTC 1 cut(s) 657
SaqAI TTAA 1 cut(s) 77
Sau3AI GATC 2 cut(s) 321, 619
Sau96I GGNCC 1 cut(s) 246
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 5 cut(s) 103, 298, 329, 410, 576
SduI GDGCHC 4 cut(s) 36, 194, 282, 482
SfaNI GCATC 3 cut(s) 341, 458, 569
SinI GGWCC 1 cut(s) 246
SmiMI CAYNNNNRTG 3 cut(s) 273, 275, 285
SmlI CTYRAG 4 cut(s) 126, 375, 481, 601
SmoI CTYRAG 4 cut(s) 126, 375, 481, 601
Sse9I AATT 7 cut(s) 41, 71, 239, 380, 419, 583, 655
SsiI CCGC 4 cut(s) 167, 249, 283, 292
SspI AATATT 2 cut(s) 538, 593
SspMI CTAG 3 cut(s) 84, 260, 432
SstI GAGCTC 2 cut(s) 36, 482
StyD4I CCNGG 5 cut(s) 101, 296, 327, 408, 574
StyI CCWWGG 4 cut(s) 206, 259, 685, 691
TaaI ACNGT 1 cut(s) 706
TaqII GACCGA 2 cut(s) 44, 659
TasI AATT 7 cut(s) 41, 71, 239, 380, 419, 583, 655
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 2 cut(s) 287, 596
Tsp45I GTSAC 2 cut(s) 287, 596
TspDTI ATGAA 2 cut(s) 287, 352
TspRI CASTG 1 cut(s) 466
VneI GTGCAC 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 246
XapI RAATTY 2 cut(s) 239, 380
XmaJI CCTAGG 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 583
XspI CTAG 3 cut(s) 84, 260, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.