MD06G1033300.v1.1

transcriptional regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0013038
Physical Location & Seq
Reverse (-)
3997553 .. 3998305
753 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1033300.v1.1.491

Sequence Viewer

Length: 753 bp
ATGGCTGAACTTGGCCTTCTCACCCGGACCGATCTCCAGAACTTAGCTCTATCACAACAAAATCAAAATCAAACCCAGTTATCAAACCCTAACTTGGTCCCCGAAGCCTGGATGTGGAACCCTAAGCCAGCTCAAGAACCCGAAGATGACTCATGGGAGGTGAGAGCCTTTGCGGAGGACACCGGTAATGTAATGGGCACCACATGGCCTCCAAGGTCTTACACTTGCACATTTTGTAGAAGGGAATTCCGATCCGCTCAAGCCCTAGGAGGCCACATGAATGTGCACCGCCGTGACCGGGCCCGCCTCCACCAATCCCCTCCTCAGATGAGCCCGGCAGCAGTCTCATCAGCTTCCACTTCCTCATTCATAATCCCAACTCAAGAATTTGTGAATGCAAATGGTGGATTATGCCTTGTTTACCAATTGCCAAGCCCTGATAGTATAAATGGTGCATCCTTCAATACTGCGACAAGTTTGATGAGCTCGAGTAGAACACATGGCCATGGTGTTGAGTCATCATCACCATCCACTCTTCTTTCAATTTCACCCAATATTCCACCTCATGACTACTTAGTGTCAGTTGTGCCACCAGCTGGAAGAAGCAATTCTAATTCCCAATATTGTCACTCAAACAAATCATCGGCTCGTGATGATCCGGAACCCTCAAAGTCTGGAACCGAAAAGGGCAATTTTGAAGAGCTTGATTTAGAGCTTCGGCTTGGGCATGGCCGACCGGCAGTACCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

251

Amino Acids

27.23

Weight (kDa)

5.89

Isoelectric Point (pI)

68.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 74 - 98 8.4e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17810 AT4G17810
fragaria_vesca FvH4_5g21910 FvH4_5g21930
malus_domestica MD06G1033300.v1.1 MD16G1275500.v1.1
prunus_persica Prupe.5G038200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209451
rosa_laevigata RLG00000003135
rosa_multiflora Rmu_co8408129.1_g000001 Rmu_sc0007059.1_g000004
rosa_roxburghii Rroxscaffold_3G00249450
rosa_rugosa Rorug07G0113000
rosa_samantha Rh7AG246900 Rh7BG242000 Rh7CG262500 Rh7DG253200
rosa_wichuraiana Rw7G020870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 596
AccBSI CCGCTC 1 cut(s) 257
AccIII TCCGGA 1 cut(s) 658
AciI CCGC 4 cut(s) 173, 255, 289, 304
AclWI GGATC 2 cut(s) 246, 650
AcoI YGGCCR 2 cut(s) 502, 730
AcsI RAATTY 2 cut(s) 245, 386
AfaI GTAC 1 cut(s) 744
AfiI CCNNNNNNNGG 5 cut(s) 94, 108, 114, 298, 596
AgeI ACCGGT 1 cut(s) 182
AgsI TTSAA 3 cut(s) 463, 543, 698
AjnI CCWGG 1 cut(s) 107
AleI CACNNNNGTG 1 cut(s) 291
AluBI AGCT 7 cut(s) 47, 131, 353, 486, 596, 703, 715
AluI AGCT 7 cut(s) 47, 131, 353, 486, 596, 703, 715
Alw21I GWGCWC 2 cut(s) 288, 488
Alw26I GTCTC 1 cut(s) 349
Alw44I GTGCAC 1 cut(s) 284
AlwI GGATC 2 cut(s) 246, 650
Ama87I CYCGRG 1 cut(s) 487
Aor13HI TCCGGA 1 cut(s) 658
AoxI GGCC 6 cut(s) 13, 206, 271, 300, 502, 730
ApaI GGGCCC 1 cut(s) 304
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 2 cut(s) 245, 386
AsiGI ACCGGT 1 cut(s) 182
Asp700I GAANNNNTTC 1 cut(s) 607
AspA2I CCTAGG 1 cut(s) 265
AspS9I GGNCC 4 cut(s) 27, 97, 300, 301
AsuC2I CCSGG 3 cut(s) 25, 299, 335
AsuHPI GGTGA 4 cut(s) 13, 172, 516, 540
AvaI CYCGRG 1 cut(s) 487
AvaII GGWCC 2 cut(s) 27, 97
AvrII CCTAGG 1 cut(s) 265
BaeGI GKGCMC 3 cut(s) 200, 288, 304
BalI TGGCCA 1 cut(s) 504
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 3 cut(s) 304, 335, 488
BauI CACGAG 1 cut(s) 648
Bbv12I GWGCWC 2 cut(s) 288, 488
BbvI GCAGC 1 cut(s) 350
BccI CCATC 1 cut(s) 535
BceAI ACGGC 1 cut(s) 276
BciT130I CCWGG 1 cut(s) 109
BcnI CCSGG 3 cut(s) 25, 299, 335
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 1 cut(s) 266
BisI GCNGC 1 cut(s) 339
BlnI CCTAGG 1 cut(s) 265
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 4 cut(s) 25, 109, 299, 335
Bme18I GGWCC 2 cut(s) 27, 97
BmeT110I CYCGRG 1 cut(s) 487
BmgT120I GGNCC 4 cut(s) 27, 97, 300, 301
BmiI GGNNCC 6 cut(s) 99, 119, 199, 302, 663, 679
BmrFI CCNGG 4 cut(s) 25, 109, 299, 335
BmrI ACTGGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 464
BmuI ACTGGG 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 3 cut(s) 117, 243, 366
BpuMI CCSGG 3 cut(s) 25, 299, 335
BsaJI CCNNGG 3 cut(s) 212, 265, 505
BsaWI WCCGGW 2 cut(s) 182, 658
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 5 cut(s) 94, 108, 114, 298, 596
Bse118I RCCGGY 2 cut(s) 182, 736
Bse1I ACTGG 1 cut(s) 76
BseAI TCCGGA 1 cut(s) 658
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 3 cut(s) 212, 265, 505
BseGI GGATG 3 cut(s) 117, 455, 527
BseLI CCNNNNNNNGG 5 cut(s) 94, 108, 114, 298, 596
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 312
BseSI GKGCMC 3 cut(s) 200, 288, 304
BseXI GCAGC 1 cut(s) 350
Bsh1285I CGRYCG 1 cut(s) 737
BshFI GGCC 6 cut(s) 15, 208, 273, 302, 504, 732
BshNI GGYRCC 1 cut(s) 197
BshTI ACCGGT 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 737
BsiHKAI GWGCWC 2 cut(s) 288, 488
BsiHKCI CYCGRG 1 cut(s) 487
BsiSI CCGG 6 cut(s) 25, 183, 298, 335, 659, 737
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 5 cut(s) 94, 108, 114, 298, 596
BsmAI GTCTC 1 cut(s) 349
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 6 cut(s) 15, 208, 273, 302, 504, 732
BsoBI CYCGRG 1 cut(s) 487
Bsp120I GGGCCC 1 cut(s) 300
Bsp1286I GDGCHC 5 cut(s) 200, 288, 304, 335, 488
Bsp13I TCCGGA 1 cut(s) 658
Bsp143I GATC 3 cut(s) 31, 251, 655
Bsp19I CCATGG 1 cut(s) 505
BspACI CCGC 4 cut(s) 173, 255, 289, 304
BspANI GGCC 6 cut(s) 15, 208, 273, 302, 504, 732
BspCNI CTCAG 1 cut(s) 337
BspEI TCCGGA 1 cut(s) 658
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 6 cut(s) 99, 119, 199, 302, 663, 679
BspPI GGATC 2 cut(s) 246, 650
BspQI GCTCTTC 1 cut(s) 693
BspT107I GGYRCC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 257
BsrFI RCCGGY 2 cut(s) 182, 736
BsrI ACTGG 1 cut(s) 76
BssAI RCCGGY 2 cut(s) 182, 736
BssECI CCNNGG 3 cut(s) 212, 265, 505
BssMI GATC 3 cut(s) 31, 251, 655
BssSI CACGAG 1 cut(s) 648
BssT1I CCWWGG 3 cut(s) 212, 265, 505
Bst2BI CACGAG 1 cut(s) 648
Bst2UI CCWGG 1 cut(s) 109
Bst6I CTCTTC 2 cut(s) 540, 693
BstC8I GCNNGC 2 cut(s) 129, 304
BstDEI CTNAG 4 cut(s) 43, 123, 324, 574
BstDSI CCRYGG 1 cut(s) 505
BstF5I GGATG 3 cut(s) 117, 455, 527
BstKTI GATC 3 cut(s) 34, 254, 658
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 3 cut(s) 31, 251, 655
BstMCI CGRYCG 1 cut(s) 737
BstNI CCWGG 1 cut(s) 109
BstSCI CCNGG 4 cut(s) 23, 107, 297, 333
BstSLI GKGCMC 3 cut(s) 200, 288, 304
BstV1I GCAGC 1 cut(s) 350
BsuRI GGCC 6 cut(s) 15, 208, 273, 302, 504, 732
BtgI CCRYGG 1 cut(s) 505
BtsCI GGATG 3 cut(s) 117, 455, 527
Cac8I GCNNGC 2 cut(s) 129, 304
CciI TCATGA 1 cut(s) 565
Cfr10I RCCGGY 2 cut(s) 182, 736
Cfr13I GGNCC 4 cut(s) 27, 97, 300, 301
CpoI CGGWCCG 1 cut(s) 27
Csp6I GTAC 1 cut(s) 743
CspAI ACCGGT 1 cut(s) 182
CspI CGGWCCG 1 cut(s) 27
CviAII CATG 7 cut(s) 153, 204, 277, 500, 506, 566, 728
CviQI GTAC 1 cut(s) 743
DdeI CTNAG 4 cut(s) 43, 123, 324, 574
DpnI GATC 3 cut(s) 33, 253, 657
DpnII GATC 3 cut(s) 31, 251, 655
EaeI YGGCCR 2 cut(s) 502, 730
Eam1104I CTCTTC 2 cut(s) 540, 693
EarI CTCTTC 2 cut(s) 540, 693
Ecl136II GAGCTC 1 cut(s) 486
Eco130I CCWWGG 3 cut(s) 212, 265, 505
Eco24I GRGCYC 3 cut(s) 304, 335, 488
Eco47I GGWCC 2 cut(s) 27, 97
Eco53kI GAGCTC 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 487
EcoICRI GAGCTC 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 107
EcoT14I CCWWGG 3 cut(s) 212, 265, 505
EcoT38I GRGCYC 3 cut(s) 304, 335, 488
ErhI CCWWGG 3 cut(s) 212, 265, 505
FaeI CATG 7 cut(s) 156, 207, 280, 503, 509, 569, 731
FaqI GGGAC 1 cut(s) 83
FatI CATG 7 cut(s) 152, 203, 276, 499, 505, 565, 727
FauI CCCGC 1 cut(s) 311
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 3 cut(s) 124, 442, 514
FriOI GRGCYC 3 cut(s) 304, 335, 488
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 1 cut(s) 266
GluI GCNGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 20
HaeIII GGCC 6 cut(s) 15, 208, 273, 302, 504, 732
HapII CCGG 6 cut(s) 25, 183, 298, 335, 659, 737
Hin1II CATG 7 cut(s) 156, 207, 280, 503, 509, 569, 731
HinfI GANTC 2 cut(s) 149, 515
HpaII CCGG 6 cut(s) 25, 183, 298, 335, 659, 737
HphI GGTGA 4 cut(s) 13, 172, 516, 540
Hpy166II GTNNAC 2 cut(s) 286, 421
Hpy188I TCNGA 2 cut(s) 251, 327
Hpy188III TCNNGA 8 cut(s) 37, 134, 383, 566, 650, 659, 675, 750
Hpy8I GTNNAC 2 cut(s) 286, 421
HpyAV CCTTC 3 cut(s) 26, 234, 469
HpyCH4V TGCA 4 cut(s) 228, 286, 398, 455
HpyF3I CTNAG 4 cut(s) 43, 123, 324, 574
Hsp92II CATG 7 cut(s) 156, 207, 280, 503, 509, 569, 731
Kpn2I TCCGGA 1 cut(s) 658
Kzo9I GATC 3 cut(s) 31, 251, 655
LguI GCTCTTC 1 cut(s) 693
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 1 cut(s) 464
MaeI CTAG 1 cut(s) 266
MaeIII GTNAC 2 cut(s) 293, 626
MalI GATC 3 cut(s) 33, 253, 657
MbiI CCGCTC 1 cut(s) 257
MboI GATC 3 cut(s) 31, 251, 655
MboII GAAGA 4 cut(s) 155, 527, 612, 710
MfeI CAATTG 1 cut(s) 425
MhlI GDGCHC 5 cut(s) 200, 288, 304, 335, 488
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 7 cut(s) 245, 386, 425, 543, 607, 613, 691
MluNI TGGCCA 1 cut(s) 504
MlyI GAGTC 2 cut(s) 143, 524
Mox20I TGGCCA 1 cut(s) 504
MroI TCCGGA 1 cut(s) 658
MroXI GAANNNNTTC 1 cut(s) 607
MscI TGGCCA 1 cut(s) 504
MslI CAYNNNNRTG 4 cut(s) 279, 281, 291, 504
Msp20I TGGCCA 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 6 cut(s) 25, 183, 298, 335, 659, 737
MspR9I CCNGG 4 cut(s) 25, 109, 299, 335
MunI CAATTG 1 cut(s) 425
Mva1269I GAATGC 1 cut(s) 400
MvaI CCWGG 1 cut(s) 109
NciI CCSGG 3 cut(s) 25, 299, 335
NcoI CCATGG 1 cut(s) 505
NdeII GATC 3 cut(s) 31, 251, 655
NlaIII CATG 7 cut(s) 156, 207, 280, 503, 509, 569, 731
NlaIV GGNNCC 6 cut(s) 99, 119, 199, 302, 663, 679
NmuCI GTSAC 2 cut(s) 293, 626
OliI CACNNNNGTG 1 cut(s) 291
PaeR7I CTCGAG 1 cut(s) 487
PagI TCATGA 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 693
PctI GAATGC 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 607
PflMI CCANNNNNTGG 1 cut(s) 596
PinAI ACCGGT 1 cut(s) 182
PkrI GCNGC 1 cut(s) 340
PleI GAGTC 2 cut(s) 143, 523
PpsI GAGTC 2 cut(s) 143, 523
Psp124BI GAGCTC 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 6 cut(s) 99, 119, 199, 302, 663, 679
PspOMI GGGCCC 1 cut(s) 300
PspPI GGNCC 4 cut(s) 27, 97, 300, 301
PspXI VCTCGAGB 1 cut(s) 487
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 1 cut(s) 744
RsaNI GTAC 1 cut(s) 743
RseI CAYNNNNRTG 4 cut(s) 279, 281, 291, 504
Rsr2I CGGWCCG 1 cut(s) 27
RsrII CGGWCCG 1 cut(s) 27
SacI GAGCTC 1 cut(s) 488
SapI GCTCTTC 1 cut(s) 693
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 3 cut(s) 31, 251, 655
Sau96I GGNCC 4 cut(s) 27, 97, 300, 301
SchI GAGTC 2 cut(s) 143, 524
ScrFI CCNGG 4 cut(s) 25, 109, 299, 335
SduI GDGCHC 5 cut(s) 200, 288, 304, 335, 488
SfaNI GCATC 1 cut(s) 464
Sfr274I CTCGAG 1 cut(s) 487
SinI GGWCC 2 cut(s) 27, 97
SlaI CTCGAG 1 cut(s) 487
SmiMI CAYNNNNRTG 4 cut(s) 279, 281, 291, 504
SmlI CTYRAG 4 cut(s) 132, 258, 381, 487
SmoI CTYRAG 4 cut(s) 132, 258, 381, 487
Sse9I AATT 7 cut(s) 245, 386, 425, 543, 607, 613, 691
SsiI CCGC 4 cut(s) 173, 255, 289, 304
SspI AATATT 2 cut(s) 556, 623
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 1 cut(s) 488
StyD4I CCNGG 4 cut(s) 23, 107, 297, 333
StyI CCWWGG 3 cut(s) 212, 265, 505
TaqI TCGA 1 cut(s) 488
TaqII GACCGA 1 cut(s) 44
TasI AATT 7 cut(s) 245, 386, 425, 543, 607, 613, 691
TseFI GTSAC 2 cut(s) 293, 626
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 2 cut(s) 293, 626
TspDTI ATGAA 2 cut(s) 293, 358
Van91I CCANNNNNTGG 1 cut(s) 596
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 2 cut(s) 27, 97
XapI RAATTY 2 cut(s) 245, 386
XhoI CTCGAG 1 cut(s) 487
XmaJI CCTAGG 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 607
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.