RchiOBHm_Chr7g0209451

transcriptional regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013038
Physical Location & Seq
Reverse (-)
26858808 .. 26859533
726 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18747

Sequence Viewer

Length: 726 bp
ATGGCTGAGCTTGGCCTTCTCTCCTTGACCCAGCTCCAAAAATTGGCACTGTCACAGGCGCAAAATCCTCAATCAAACCCTAGATCAGTCTGGATGTGGAACCCTAAGCAGGCGCAAGACCAAGAAGACGACTCATGGGAAGTGAGGGCCTTTGCGGAGGATACCGGAAACGTGATGGGCACCACGTGGCCCCCGAGGTCTTACACCTGCACATTTTGCCGGAGGGAATTCCGGTCTGCCCAGGCCCTCGGCGGCCACATGAACGTGCACCGCCGCGACCGGGCGCGCCTCCACCAAGTGCAGCACCCCAGCTCAATCTCAATCAACCCCTCTGCGGTCTCCTCTTCCAGTTCCTCATTCATAATCCCAACTCAAGAGTTCATCGCCGCCAACGGCGGGTTGTGCCTTCTCTACCAATTGCCAAACCCTAACAATGGAACCTTCAGTACTAGTACTGCTACTACTCCAACTGCACCTTTGCTTAACAACACTATTGAGTCTTCTTCTTCAGTACCCTCCACTCTTCTCTCCATCACCCCCAATCCACCCCATGACTACTTAATGACATCATCATCTTGTCTTGTGGAGCCTCATGGAGTTTCCAATTCTAGAAATAATTCCCATTGTCAATACGCAAAACGATCAGCGGATCAAGATCAACCTTCGAGGTCTGGGGTTGAAGATATTGAAGAGCTTGATTTAGAGCTCCGGCTCGGTCCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

241

Amino Acids

26.45

Weight (kDa)

5.77

Isoelectric Point (pI)

64.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 68 - 92 8e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17810 AT4G17810
fragaria_vesca FvH4_5g21910 FvH4_5g21930
malus_domestica MD06G1033300.v1.1 MD16G1275500.v1.1
prunus_persica Prupe.5G038200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209451
rosa_laevigata RLG00000003135
rosa_multiflora Rmu_co8408129.1_g000001 Rmu_sc0007059.1_g000004
rosa_roxburghii Rroxscaffold_3G00249450
rosa_rugosa Rorug07G0113000
rosa_samantha Rh7AG246900 Rh7BG242000 Rh7CG262500 Rh7DG253200
rosa_wichuraiana Rw7G020870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 215
Acc36I ACCTGC 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 43
AccII CGCG 2 cut(s) 276, 286
AciI CCGC 8 cut(s) 155, 252, 271, 274, 335, 387, 396, 647
AclWI GGATC 1 cut(s) 657
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 2 cut(s) 427, 492
AcvI CACGTG 1 cut(s) 186
AdeI CACNNNGTG 2 cut(s) 186, 298
AfaI GTAC 3 cut(s) 448, 454, 513
AfiI CCNNNNNNNGG 6 cut(s) 43, 109, 280, 334, 396, 434
AgsI TTSAA 2 cut(s) 680, 689
AhlI ACTAGT 1 cut(s) 449
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 5 cut(s) 10, 34, 312, 694, 706
AluI AGCT 5 cut(s) 10, 34, 312, 694, 706
Alw21I GWGCWC 2 cut(s) 270, 708
Alw26I GTCTC 1 cut(s) 343
Alw44I GTGCAC 1 cut(s) 266
AlwI GGATC 1 cut(s) 657
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 5 cut(s) 13, 147, 188, 243, 253
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 227
AscI GGCGCGCC 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 616
AspLEI GCGC 4 cut(s) 61, 115, 286, 288
AspS9I GGNCC 4 cut(s) 147, 189, 244, 716
AsuC2I CCSGG 1 cut(s) 281
AsuHPI GGTGA 1 cut(s) 526
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 1 cut(s) 716
BaeGI GKGCMC 2 cut(s) 182, 270
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 708
BbrPI CACGTG 1 cut(s) 186
BbsI GAAGAC 2 cut(s) 132, 492
Bbv12I GWGCWC 2 cut(s) 270, 708
BbvI GCAGC 1 cut(s) 313
BccI CCATC 2 cut(s) 169, 539
BceAI ACGGC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 242
BciVI GTATCC 1 cut(s) 154
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 1 cut(s) 343
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 3 cut(s) 81, 450, 609
BfuAI ACCTGC 1 cut(s) 215
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 4 cut(s) 253, 274, 302, 387
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 4 cut(s) 254, 275, 303, 388
BmcAI AGTACT 2 cut(s) 448, 454
Bme1390I CCNGG 2 cut(s) 242, 281
Bme18I GGWCC 1 cut(s) 716
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 4 cut(s) 147, 189, 244, 716
BmiI GGNNCC 5 cut(s) 101, 181, 191, 439, 588
BmrFI CCNGG 2 cut(s) 242, 281
BpiI GAAGAC 2 cut(s) 132, 492
Bpu10I CCTNAGC 1 cut(s) 105
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 281
BsaAI YACGTR 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 654
BsaI GGTCTC 1 cut(s) 343
BsaJI CCNNGG 3 cut(s) 194, 240, 247
BsaWI WCCGGW 2 cut(s) 164, 231
Bsc4I CCNNNNNNNGG 6 cut(s) 43, 109, 280, 334, 396, 434
Bse1I ACTGG 1 cut(s) 348
Bse8I GATNNNNATC 1 cut(s) 654
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 3 cut(s) 194, 240, 247
BseGI GGATG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 654
BseLI CCNNNNNNNGG 6 cut(s) 43, 109, 280, 334, 396, 434
BseNI ACTGG 1 cut(s) 348
BsePI GCGCGC 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 331
BseSI GKGCMC 2 cut(s) 182, 270
BseXI GCAGC 1 cut(s) 313
BseYI CCCAGC 2 cut(s) 30, 308
BsgI GTGCAG 3 cut(s) 193, 320, 456
Bsh1236I CGCG 2 cut(s) 276, 286
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 5 cut(s) 15, 149, 190, 245, 255
BshNI GGYRCC 1 cut(s) 179
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 2 cut(s) 270, 708
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 5 cut(s) 165, 220, 232, 280, 709
BslI CCNNNNNNNGG 6 cut(s) 43, 109, 280, 334, 396, 434
BsmAI GTCTC 1 cut(s) 343
BsnI GGCC 5 cut(s) 15, 149, 190, 245, 255
Bso31I GGTCTC 1 cut(s) 343
BsoBI CYCGRG 1 cut(s) 193
Bsp1286I GDGCHC 3 cut(s) 182, 270, 708
Bsp143I GATC 4 cut(s) 83, 641, 649, 655
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 8 cut(s) 155, 252, 271, 274, 335, 387, 396, 647
BspANI GGCC 5 cut(s) 15, 149, 190, 245, 255
BspFNI CGCG 2 cut(s) 276, 286
BspLI GGNNCC 5 cut(s) 101, 181, 191, 439, 588
BspMI ACCTGC 1 cut(s) 215
BspPI GGATC 1 cut(s) 657
BspQI GCTCTTC 1 cut(s) 684
BspT107I GGYRCC 1 cut(s) 179
BspTNI GGTCTC 1 cut(s) 343
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 3 cut(s) 194, 240, 247
BssHII GCGCGC 1 cut(s) 284
BssMI GATC 4 cut(s) 83, 641, 649, 655
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 3 cut(s) 349, 528, 684
BstAPI GCANNNNNTGC 1 cut(s) 216
BstBAI YACGTR 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 111, 286
BstDEI CTNAG 2 cut(s) 6, 105
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 2 cut(s) 276, 286
BstHHI GCGC 4 cut(s) 61, 115, 286, 288
BstKTI GATC 4 cut(s) 86, 644, 652, 658
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 4 cut(s) 83, 641, 649, 655
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 2 cut(s) 216, 402
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 2 cut(s) 240, 279
BstSLI GKGCMC 2 cut(s) 182, 270
BstUI CGCG 2 cut(s) 276, 286
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 2 cut(s) 132, 492
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 5 cut(s) 15, 149, 190, 245, 255
BtgZI GCGATG 1 cut(s) 367
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 47
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 2 cut(s) 111, 286
CfoI GCGC 4 cut(s) 61, 115, 286, 288
Cfr13I GGNCC 4 cut(s) 147, 189, 244, 716
Csp6I GTAC 3 cut(s) 447, 453, 512
CviAII CATG 4 cut(s) 135, 259, 551, 593
CviQI GTAC 3 cut(s) 447, 453, 512
DdeI CTNAG 2 cut(s) 6, 105
DpnI GATC 4 cut(s) 85, 643, 651, 657
DpnII GATC 4 cut(s) 83, 641, 649, 655
DraIII CACNNNGTG 2 cut(s) 186, 298
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 3 cut(s) 349, 528, 684
EarI CTCTTC 3 cut(s) 349, 528, 684
Ecl136II GAGCTC 1 cut(s) 706
Eco24I GRGCYC 1 cut(s) 708
Eco31I GGTCTC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 716
Eco53kI GAGCTC 1 cut(s) 706
Eco57I CTGAAG 2 cut(s) 427, 492
Eco72I CACGTG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 706
EcoO109I RGGNCCY 2 cut(s) 147, 244
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 708
FaeI CATG 4 cut(s) 138, 262, 554, 596
FaiI YATR 5 cut(s) 136, 260, 362, 552, 594
FatI CATG 4 cut(s) 134, 258, 550, 592
FauI CCCGC 1 cut(s) 389
Fnu4HI GCNGC 4 cut(s) 253, 274, 302, 387
FokI GGATG 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 708
Fsp4HI GCNGC 4 cut(s) 253, 274, 302, 387
FspBI CTAG 3 cut(s) 81, 450, 609
GlaI GCGC 4 cut(s) 60, 114, 285, 287
GluI GCNGC 4 cut(s) 253, 274, 302, 387
GsaI CCCAGC 2 cut(s) 34, 312
HaeIII GGCC 5 cut(s) 15, 149, 190, 245, 255
HapII CCGG 5 cut(s) 165, 220, 232, 280, 709
HhaI GCGC 4 cut(s) 61, 115, 286, 288
Hin1II CATG 4 cut(s) 138, 262, 554, 596
Hin6I GCGC 4 cut(s) 59, 113, 284, 286
HinP1I GCGC 4 cut(s) 59, 113, 284, 286
HinfI GANTC 2 cut(s) 131, 497
HpaII CCGG 5 cut(s) 165, 220, 232, 280, 709
HphI GGTGA 1 cut(s) 526
Hpy166II GTNNAC 1 cut(s) 268
Hpy188III TCNNGA 5 cut(s) 91, 374, 609, 653, 723
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 4 cut(s) 26, 416, 451, 672
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 3 cut(s) 171, 185, 264
HpyCH4V TGCA 4 cut(s) 210, 268, 301, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 216, 402
HpyF3I CTNAG 2 cut(s) 6, 105
HpySE526I ACGT 3 cut(s) 171, 185, 264
Hsp92II CATG 4 cut(s) 138, 262, 554, 596
HspAI GCGC 4 cut(s) 59, 113, 284, 286
Kzo9I GATC 4 cut(s) 83, 641, 649, 655
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 3 cut(s) 39, 586, 711
Lsp1109I GCAGC 1 cut(s) 313
MaeI CTAG 3 cut(s) 81, 450, 609
MaeII ACGT 3 cut(s) 171, 185, 264
MaeIII GTNAC 1 cut(s) 51
MalI GATC 4 cut(s) 85, 643, 651, 657
MboI GATC 4 cut(s) 83, 641, 649, 655
MboII GAAGA 8 cut(s) 137, 336, 492, 495, 498, 515, 692, 701
MfeI CAATTG 1 cut(s) 416
MhlI GDGCHC 3 cut(s) 182, 270, 708
MluCI AATT 5 cut(s) 41, 227, 416, 604, 616
MlyI GAGTC 2 cut(s) 125, 506
MmeI TCCRAC 1 cut(s) 491
MroXI GAANNNNTTC 1 cut(s) 616
MseI TTAA 2 cut(s) 483, 560
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 5 cut(s) 165, 220, 232, 280, 709
MspR9I CCNGG 2 cut(s) 242, 281
MunI CAATTG 1 cut(s) 416
MvaI CCWGG 1 cut(s) 242
MvnI CGCG 2 cut(s) 276, 286
MwoI GCNNNNNNNGC 2 cut(s) 216, 402
NciI CCSGG 1 cut(s) 281
NdeII GATC 4 cut(s) 83, 641, 649, 655
NlaIII CATG 4 cut(s) 138, 262, 554, 596
NlaIV GGNNCC 5 cut(s) 101, 181, 191, 439, 588
NmeAIII GCCGAG 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 51
PalAI GGCGCGCC 1 cut(s) 284
PaqCI CACCTGC 1 cut(s) 215
PauI GCGCGC 1 cut(s) 284
PciSI GCTCTTC 1 cut(s) 684
PcsI WCGNNNNNNNCGW 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 616
PflMI CCANNNNNTGG 1 cut(s) 43
PkrI GCNGC 4 cut(s) 254, 275, 303, 388
PleI GAGTC 2 cut(s) 125, 505
PmaCI CACGTG 1 cut(s) 186
PmlI CACGTG 1 cut(s) 186
PpsI GAGTC 2 cut(s) 125, 505
Ppu21I YACGTR 1 cut(s) 186
Psp124BI GAGCTC 1 cut(s) 708
Psp6I CCWGG 1 cut(s) 240
PspCI CACGTG 1 cut(s) 186
PspFI CCCAGC 2 cut(s) 30, 308
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 5 cut(s) 101, 181, 191, 439, 588
PspPI GGNCC 4 cut(s) 147, 189, 244, 716
PsrI GAACNNNNNNTAC 2 cut(s) 430, 462
PteI GCGCGC 1 cut(s) 284
RsaI GTAC 3 cut(s) 448, 454, 513
RsaNI GTAC 3 cut(s) 447, 453, 512
RseI CAYNNNNRTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 708
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 2 cut(s) 483, 560
SatI GCNGC 4 cut(s) 253, 274, 302, 387
Sau3AI GATC 4 cut(s) 83, 641, 649, 655
Sau96I GGNCC 4 cut(s) 147, 189, 244, 716
ScaI AGTACT 2 cut(s) 448, 454
SchI GAGTC 2 cut(s) 125, 506
ScrFI CCNGG 2 cut(s) 242, 281
SduI GDGCHC 3 cut(s) 182, 270, 708
SgsI GGCGCGCC 1 cut(s) 284
SinI GGWCC 1 cut(s) 716
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
SpeI ACTAGT 1 cut(s) 449
Sse9I AATT 5 cut(s) 41, 227, 416, 604, 616
SsiI CCGC 8 cut(s) 155, 252, 271, 274, 335, 387, 396, 647
SspMI CTAG 3 cut(s) 81, 450, 609
SstI GAGCTC 1 cut(s) 708
StyD4I CCNGG 2 cut(s) 240, 279
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 3 cut(s) 174, 188, 267
TaqI TCGA 1 cut(s) 665
TaqII GACCGA 1 cut(s) 704
TasI AATT 5 cut(s) 41, 227, 416, 604, 616
TatI WGTACW 2 cut(s) 446, 452
TauI GCSGC 3 cut(s) 255, 276, 389
Tru1I TTAA 2 cut(s) 483, 560
Tru9I TTAA 2 cut(s) 483, 560
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 1 cut(s) 51
TseI GCWGC 1 cut(s) 301
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 3 cut(s) 275, 349, 370
TspRI CASTG 1 cut(s) 54
Van91I CCANNNNNTGG 1 cut(s) 43
VneI GTGCAC 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 1 cut(s) 227
XbaI TCTAGA 1 cut(s) 608
XmnI GAANNNNTTC 1 cut(s) 616
XspI CTAG 3 cut(s) 81, 450, 609
ZrmI AGTACT 2 cut(s) 448, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.