Rmu_co8408129.1_g000001

transcriptional regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8408129.1
OG0013038
Physical Location & Seq
Forward (+)
19 .. 570
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8408129.1_g000001.1.cds

Sequence Viewer

Length: 552 bp
atgggcaccacgtggcccccgaggtcttacacctgcacattttgccggagggaattccggtctgcccaggccctcggaggccacatgaacgtgcaccgccgcgaccgggcgcgcctccaccaagtgcagcaccccagctcaatctcaatcaacccctctgcggtctcctcttcaagttcctcattcataatcccaactcaagagttcatcgccgccaacggcgggttgtgccttctctaccaattgccaaaccctaacaatggagccttcaatactagtactgctactactccaactgcacctttgcttaacaacactattgagtcttcttcttcagtaccctccactcttctctccatcacccccaatccaccccatgactacttaatgacatcatcatcttgtcttgtggagcctcatggagttttcaattcgagaaataattcccattgtcaatacgcaaaacgatcagcggatcaagatcaaccttcgaggtctggggttgaagatattgaagagcttgatttagagctccggctcggtccatcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

183

Amino Acids

19.96

Weight (kDa)

6.64

Isoelectric Point (pI)

66.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17810 AT4G17810
fragaria_vesca FvH4_5g21910 FvH4_5g21930
malus_domestica MD06G1033300.v1.1 MD16G1275500.v1.1
prunus_persica Prupe.5G038200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209451
rosa_laevigata RLG00000003135
rosa_multiflora Rmu_co8408129.1_g000001 Rmu_sc0007059.1_g000004
rosa_roxburghii Rroxscaffold_3G00249450
rosa_rugosa Rorug07G0113000
rosa_samantha Rh7AG246900 Rh7BG242000 Rh7CG262500 Rh7DG253200
rosa_wichuraiana Rw7G020870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 41
Acc36I ACCTGC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 5
AccII CGCG 2 cut(s) 102, 112
AciI CCGC 6 cut(s) 97, 100, 161, 213, 222, 473
AclWI GGATC 1 cut(s) 483
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 318
AcvI CACGTG 1 cut(s) 12
AdeI CACNNNGTG 2 cut(s) 12, 124
AfaI GTAC 2 cut(s) 280, 339
AfiI CCNNNNNNNGG 4 cut(s) 106, 160, 222, 260
AgsI TTSAA 5 cut(s) 174, 271, 430, 506, 515
AhlI ACTAGT 1 cut(s) 275
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 3 cut(s) 138, 520, 532
AluI AGCT 3 cut(s) 138, 520, 532
Alw21I GWGCWC 2 cut(s) 96, 534
Alw26I GTCTC 1 cut(s) 169
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 1 cut(s) 483
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 3 cut(s) 14, 69, 79
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 53
AscI GGCGCGCC 1 cut(s) 110
Asp700I GAANNNNTTC 1 cut(s) 442
AspLEI GCGC 2 cut(s) 112, 114
AspS9I GGNCC 3 cut(s) 15, 70, 542
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 352
AvaI CYCGRG 1 cut(s) 19
AvaII GGWCC 1 cut(s) 542
BaeGI GKGCMC 2 cut(s) 8, 96
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 534
BbrPI CACGTG 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 318
Bbv12I GWGCWC 2 cut(s) 96, 534
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 365
BceAI ACGGC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 68
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 169
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 41
BisI GCNGC 3 cut(s) 100, 128, 213
BlsI GCNGC 3 cut(s) 101, 129, 214
BmcAI AGTACT 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 68, 107
Bme18I GGWCC 1 cut(s) 542
BmeT110I CYCGRG 1 cut(s) 19
BmgT120I GGNCC 3 cut(s) 15, 70, 542
BmiI GGNNCC 4 cut(s) 7, 17, 265, 414
BmrFI CCNGG 2 cut(s) 68, 107
BpiI GAAGAC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 183
BpuMI CCSGG 1 cut(s) 107
BsaAI YACGTR 1 cut(s) 12
BsaBI GATNNNNATC 1 cut(s) 480
BsaI GGTCTC 1 cut(s) 169
BsaJI CCNNGG 3 cut(s) 20, 66, 73
BsaWI WCCGGW 1 cut(s) 57
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 160, 222, 260
Bse8I GATNNNNATC 1 cut(s) 480
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 3 cut(s) 20, 66, 73
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 4 cut(s) 106, 160, 222, 260
BsePI GCGCGC 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 157
BseSI GKGCMC 2 cut(s) 8, 96
BseXI GCAGC 1 cut(s) 139
BseYI CCCAGC 1 cut(s) 134
BsgI GTGCAG 3 cut(s) 19, 146, 282
Bsh1236I CGCG 2 cut(s) 102, 112
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 3 cut(s) 16, 71, 81
BshNI GGYRCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 106
BsiHKAI GWGCWC 2 cut(s) 96, 534
BsiHKCI CYCGRG 1 cut(s) 19
BsiSI CCGG 4 cut(s) 46, 58, 106, 535
BslI CCNNNNNNNGG 4 cut(s) 106, 160, 222, 260
BsmAI GTCTC 1 cut(s) 169
BsnI GGCC 3 cut(s) 16, 71, 81
Bso31I GGTCTC 1 cut(s) 169
BsoBI CYCGRG 1 cut(s) 19
Bsp1286I GDGCHC 3 cut(s) 8, 96, 534
Bsp143I GATC 3 cut(s) 467, 475, 481
BspACI CCGC 6 cut(s) 97, 100, 161, 213, 222, 473
BspANI GGCC 3 cut(s) 16, 71, 81
BspFNI CGCG 2 cut(s) 102, 112
BspLI GGNNCC 4 cut(s) 7, 17, 265, 414
BspMI ACCTGC 1 cut(s) 41
BspPI GGATC 1 cut(s) 483
BspQI GCTCTTC 1 cut(s) 510
BspT107I GGYRCC 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 169
BssECI CCNNGG 3 cut(s) 20, 66, 73
BssHII GCGCGC 1 cut(s) 110
BssMI GATC 3 cut(s) 467, 475, 481
Bst2UI CCWGG 1 cut(s) 68
Bst6I CTCTTC 3 cut(s) 175, 354, 510
BstAPI GCANNNNNTGC 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 112
BstFNI CGCG 2 cut(s) 102, 112
BstHHI GCGC 2 cut(s) 112, 114
BstKTI GATC 3 cut(s) 470, 478, 484
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 3 cut(s) 467, 475, 481
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 42, 228
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 66, 105
BstSLI GKGCMC 2 cut(s) 8, 96
BstUI CGCG 2 cut(s) 102, 112
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 318
BsuRI GGCC 3 cut(s) 16, 71, 81
BtgZI GCGATG 1 cut(s) 193
BveI ACCTGC 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 2 cut(s) 112, 114
Cfr13I GGNCC 3 cut(s) 15, 70, 542
Csp6I GTAC 2 cut(s) 279, 338
CviAII CATG 3 cut(s) 85, 377, 419
CviJI RGCY 9 cut(s) 16, 71, 81, 138, 266, 415, 520, 532, 538
CviKI_1 RGCY 9 cut(s) 16, 71, 81, 138, 266, 415, 520, 532, 538
CviQI GTAC 2 cut(s) 279, 338
DpnI GATC 3 cut(s) 469, 477, 483
DpnII GATC 3 cut(s) 467, 475, 481
DraIII CACNNNGTG 2 cut(s) 12, 124
Eam1104I CTCTTC 3 cut(s) 175, 354, 510
EarI CTCTTC 3 cut(s) 175, 354, 510
Ecl136II GAGCTC 1 cut(s) 532
Eco24I GRGCYC 1 cut(s) 534
Eco31I GGTCTC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 542
Eco53kI GAGCTC 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 318
Eco72I CACGTG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 19
EcoICRI GAGCTC 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 534
FaeI CATG 3 cut(s) 88, 380, 422
FaiI YATR 4 cut(s) 86, 188, 378, 420
FatI CATG 3 cut(s) 84, 376, 418
FauI CCCGC 1 cut(s) 215
Fnu4HI GCNGC 3 cut(s) 100, 128, 213
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 3 cut(s) 100, 128, 213
FspBI CTAG 1 cut(s) 276
GlaI GCGC 2 cut(s) 111, 113
GluI GCNGC 3 cut(s) 100, 128, 213
GsaI CCCAGC 1 cut(s) 138
HaeIII GGCC 3 cut(s) 16, 71, 81
HapII CCGG 4 cut(s) 46, 58, 106, 535
HhaI GCGC 2 cut(s) 112, 114
Hin1II CATG 3 cut(s) 88, 380, 422
Hin6I GCGC 2 cut(s) 110, 112
HinP1I GCGC 2 cut(s) 110, 112
HinfI GANTC 1 cut(s) 323
HpaII CCGG 4 cut(s) 46, 58, 106, 535
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 4 cut(s) 200, 435, 479, 549
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 3 cut(s) 242, 277, 498
HpyCH4IV ACGT 2 cut(s) 11, 90
HpyCH4V TGCA 4 cut(s) 36, 94, 127, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 228
HpySE526I ACGT 2 cut(s) 11, 90
Hsp92II CATG 3 cut(s) 88, 380, 422
HspAI GCGC 2 cut(s) 110, 112
Kzo9I GATC 3 cut(s) 467, 475, 481
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 3 cut(s) 263, 412, 537
LpnPI CCDG 9 cut(s) 46, 53, 59, 71, 80, 119, 148, 483, 548
Lsp1109I GCAGC 1 cut(s) 139
MaeI CTAG 1 cut(s) 276
MaeII ACGT 2 cut(s) 11, 90
MalI GATC 3 cut(s) 469, 477, 483
MboI GATC 3 cut(s) 467, 475, 481
MboII GAAGA 7 cut(s) 162, 318, 321, 324, 341, 518, 527
MfeI CAATTG 1 cut(s) 242
MhlI GDGCHC 3 cut(s) 8, 96, 534
MluCI AATT 4 cut(s) 53, 242, 430, 442
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 317
MroXI GAANNNNTTC 1 cut(s) 442
MseI TTAA 2 cut(s) 309, 386
MslI CAYNNNNRTG 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 473
MspI CCGG 4 cut(s) 46, 58, 106, 535
MspR9I CCNGG 2 cut(s) 68, 107
MunI CAATTG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 68
MvnI CGCG 2 cut(s) 102, 112
MwoI GCNNNNNNNGC 2 cut(s) 42, 228
NciI CCSGG 1 cut(s) 107
NdeII GATC 3 cut(s) 467, 475, 481
NlaIII CATG 3 cut(s) 88, 380, 422
NlaIV GGNNCC 4 cut(s) 7, 17, 265, 414
PalAI GGCGCGCC 1 cut(s) 110
PaqCI CACCTGC 1 cut(s) 41
PauI GCGCGC 1 cut(s) 110
PciSI GCTCTTC 1 cut(s) 510
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 442
PkrI GCNGC 3 cut(s) 101, 129, 214
PleI GAGTC 1 cut(s) 331
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
PpsI GAGTC 1 cut(s) 331
Ppu21I YACGTR 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 66
PspCI CACGTG 1 cut(s) 12
PspFI CCCAGC 1 cut(s) 134
PspGI CCWGG 1 cut(s) 66
PspN4I GGNNCC 4 cut(s) 7, 17, 265, 414
PspPI GGNCC 3 cut(s) 15, 70, 542
PteI GCGCGC 1 cut(s) 110
RsaI GTAC 2 cut(s) 280, 339
RsaNI GTAC 2 cut(s) 279, 338
RseI CAYNNNNRTG 1 cut(s) 89
SacI GAGCTC 1 cut(s) 534
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 2 cut(s) 309, 386
SatI GCNGC 3 cut(s) 100, 128, 213
Sau3AI GATC 3 cut(s) 467, 475, 481
Sau96I GGNCC 3 cut(s) 15, 70, 542
ScaI AGTACT 1 cut(s) 280
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 68, 107
SduI GDGCHC 3 cut(s) 8, 96, 534
SgsI GGCGCGCC 1 cut(s) 110
SinI GGWCC 1 cut(s) 542
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
SpeI ACTAGT 1 cut(s) 275
Sse9I AATT 4 cut(s) 53, 242, 430, 442
SsiI CCGC 6 cut(s) 97, 100, 161, 213, 222, 473
SspMI CTAG 1 cut(s) 276
SstI GAGCTC 1 cut(s) 534
StyD4I CCNGG 2 cut(s) 66, 105
TaiI ACGT 2 cut(s) 14, 93
TaqI TCGA 2 cut(s) 434, 491
TaqII GACCGA 1 cut(s) 530
TasI AATT 4 cut(s) 53, 242, 430, 442
TatI WGTACW 1 cut(s) 278
TauI GCSGC 2 cut(s) 102, 215
Tru1I TTAA 2 cut(s) 309, 386
Tru9I TTAA 2 cut(s) 309, 386
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 3 cut(s) 101, 175, 196
VneI GTGCAC 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 542
XapI RAATTY 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 1 cut(s) 276
ZrmI AGTACT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.