FvH4_5g21930

transcriptional regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0013038
Physical Location & Seq
Reverse (-)
13297756 .. 13298469
714 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21930.t1

Sequence Viewer

Length: 714 bp
ATGGCTGAGCTTGGCCTCCTCTCCTTGACCCAGCTCCAAGCGCAAAATTCTCAATCAAACCCTAGATCAGTCTGGATGTGGAACCCTAAGCAGGCGCATGACCAAGAAGACGACTCATGGGAAGTGAGGGCATTTGCGGAGGACACCGGAAACGTGATGGGCACCACGTGGCCGCCGAGGTCTTACACCTGCACATTTTGCCGGAGGGAATTCCGGTCTGCTCAGGCCCTCGGTGGCCACATGAACGTACACCGCCGCGACCGGGCACGCCTCCACCAAGTGCAGCACCCTAGCTCAATCTCAATCAACCCTTCTGCCGTCTCCTCTTCCAATTCTTCATTCGTAATCCCAACTCAAGAGTTCCTCGCCGCCAATGGCGGATTGTGCCTTCTTTACCAATTGCCTCACCCTAATAATGGAGCATTCACTAATAGTAATGCTACTGCTCCCATTACACCTTTTCTTAATAACACTACTGTTGAGTCTTCTTCTTCTTCAGTACCTTCCACTCTTCTCTCCATCTCCCCTAATCCACTCCATGACTACTTAATGACGTCATCGTCTAGTCTTGTGGGACCTCATGGAGTTTCCAATTCCATAAAAAATTCTCATTGTCAATACGCAAAAAGATCGGCGGAGGAAGATCAACCTTTGAAGTCTGGGGTTGAAGATAGTGAAGAGCTTGATTTAGAGCTCCGGCTCGGTCCATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

238

Amino Acids

25.95

Weight (kDa)

5.81

Isoelectric Point (pI)

55.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 62 - 86 7.8e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17810 AT4G17810
fragaria_vesca FvH4_5g21910 FvH4_5g21930
malus_domestica MD06G1033300.v1.1 MD16G1275500.v1.1
prunus_persica Prupe.5G038200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0209451
rosa_laevigata RLG00000003135
rosa_multiflora Rmu_co8408129.1_g000001 Rmu_sc0007059.1_g000004
rosa_roxburghii Rroxscaffold_3G00249450
rosa_rugosa Rorug07G0113000
rosa_samantha Rh7AG246900 Rh7BG242000 Rh7CG262500 Rh7DG253200
rosa_wichuraiana Rw7G020870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 197
AasI GACNNNNNNGTC 1 cut(s) 559
AatII GACGTC 1 cut(s) 557
Acc36I ACCTGC 1 cut(s) 197
AccB1I GGYRCC 1 cut(s) 161
AccII CGCG 1 cut(s) 258
AciI CCGC 7 cut(s) 137, 173, 253, 256, 369, 378, 635
AcoI YGGCCR 2 cut(s) 170, 235
AcsI RAATTY 3 cut(s) 46, 209, 604
AcuI CTGAAG 1 cut(s) 480
AcvI CACGTG 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 554
AdeI CACNNNGTG 2 cut(s) 168, 280
AfaI GTAC 2 cut(s) 249, 501
AfiI CCNNNNNNNGG 3 cut(s) 91, 262, 416
AgsI TTSAA 2 cut(s) 655, 668
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AluBI AGCT 5 cut(s) 10, 34, 294, 682, 694
AluI AGCT 5 cut(s) 10, 34, 294, 682, 694
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 1 cut(s) 325
AoxI GGCC 4 cut(s) 13, 170, 225, 235
ApeKI GCWGC 1 cut(s) 283
ApoI RAATTY 3 cut(s) 46, 209, 604
AspLEI GCGC 2 cut(s) 43, 97
AspS9I GGNCC 3 cut(s) 226, 575, 704
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 398
AvaII GGWCC 2 cut(s) 575, 704
BaeGI GKGCMC 2 cut(s) 164, 268
BalI TGGCCA 1 cut(s) 237
BanI GGYRCC 1 cut(s) 161
BanII GRGCYC 1 cut(s) 696
BbrPI CACGTG 1 cut(s) 168
BbsI GAAGAC 2 cut(s) 114, 477
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 1 cut(s) 295
BccI CCATC 2 cut(s) 151, 527
BceAI ACGGC 1 cut(s) 302
BcgI CGANNNNNNTGC 2 cut(s) 612, 646
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 3 cut(s) 63, 291, 564
BfuAI ACCTGC 1 cut(s) 197
BisI GCNGC 4 cut(s) 173, 256, 284, 369
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 4 cut(s) 174, 257, 285, 370
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 2 cut(s) 575, 704
BmgT120I GGNCC 3 cut(s) 226, 575, 704
BmiI GGNNCC 3 cut(s) 83, 163, 576
BmrFI CCNGG 1 cut(s) 263
BpiI GAAGAC 2 cut(s) 114, 477
Bpu10I CCTNAGC 2 cut(s) 87, 222
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 339
BpuMI CCSGG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 554
BsaJI CCNNGG 2 cut(s) 176, 229
BsaWI WCCGGW 2 cut(s) 146, 213
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 262, 416
BseDI CCNNGG 2 cut(s) 176, 229
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 3 cut(s) 91, 262, 416
BseMII CTCAG 1 cut(s) 236
BseRI GAGGAG 2 cut(s) 8, 313
BseSI GKGCMC 2 cut(s) 164, 268
BseXI GCAGC 1 cut(s) 295
BseYI CCCAGC 1 cut(s) 30
BsgI GTGCAG 2 cut(s) 175, 302
Bsh1236I CGCG 1 cut(s) 258
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 4 cut(s) 15, 172, 227, 237
BshNI GGYRCC 1 cut(s) 161
BsiEI CGRYCG 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 696
BsiSI CCGG 5 cut(s) 147, 202, 214, 262, 697
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 3 cut(s) 91, 262, 416
BsmAI GTCTC 1 cut(s) 325
BsmBI CGTCTC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 588
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 4 cut(s) 15, 172, 227, 237
Bsp1286I GDGCHC 3 cut(s) 164, 268, 696
Bsp143I GATC 3 cut(s) 65, 629, 643
Bsp1720I GCTNAGC 1 cut(s) 6
BspACI CCGC 7 cut(s) 137, 173, 253, 256, 369, 378, 635
BspANI GGCC 4 cut(s) 15, 172, 227, 237
BspCNI CTCAG 1 cut(s) 235
BspFNI CGCG 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 83, 163, 576
BspMI ACCTGC 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 672
BspT107I GGYRCC 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 176, 229
BssMI GATC 3 cut(s) 65, 629, 643
BssNI GRCGYC 1 cut(s) 554
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 3 cut(s) 331, 516, 672
BstACI GRCGYC 1 cut(s) 554
BstAPI GCANNNNNTGC 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 168
BstC8I GCNNGC 2 cut(s) 93, 268
BstDEI CTNAG 3 cut(s) 6, 87, 222
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 258
BstHHI GCGC 2 cut(s) 43, 97
BstKTI GATC 3 cut(s) 68, 632, 646
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 3 cut(s) 65, 629, 643
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 3 cut(s) 40, 198, 384
BstSCI CCNGG 1 cut(s) 261
BstSLI GKGCMC 2 cut(s) 164, 268
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 295
BstV2I GAAGAC 2 cut(s) 114, 477
BsuRI GGCC 4 cut(s) 15, 172, 227, 237
BtsCI GGATG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 197
Cac8I GCNNGC 2 cut(s) 93, 268
CfoI GCGC 2 cut(s) 43, 97
Cfr13I GGNCC 3 cut(s) 226, 575, 704
Csp6I GTAC 2 cut(s) 248, 500
CviAII CATG 5 cut(s) 98, 117, 241, 539, 581
CviQI GTAC 2 cut(s) 248, 500
DdeI CTNAG 3 cut(s) 6, 87, 222
DpnI GATC 3 cut(s) 67, 631, 645
DpnII GATC 3 cut(s) 65, 629, 643
DraIII CACNNNGTG 2 cut(s) 168, 280
DrdI GACNNNNNNGTC 1 cut(s) 559
DseDI GACNNNNNNGTC 1 cut(s) 559
EaeI YGGCCR 2 cut(s) 170, 235
Eam1104I CTCTTC 3 cut(s) 331, 516, 672
EarI CTCTTC 3 cut(s) 331, 516, 672
EciI GGCGGA 2 cut(s) 393, 650
Ecl136II GAGCTC 1 cut(s) 694
Eco24I GRGCYC 1 cut(s) 696
Eco47I GGWCC 2 cut(s) 575, 704
Eco53kI GAGCTC 1 cut(s) 694
Eco57I CTGAAG 1 cut(s) 480
Eco72I CACGTG 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 694
EcoO109I RGGNCCY 2 cut(s) 226, 575
EcoRI GAATTC 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 696
Esp3I CGTCTC 1 cut(s) 325
FaeI CATG 5 cut(s) 101, 120, 244, 542, 584
FaiI YATR 6 cut(s) 99, 118, 242, 540, 582, 599
FaqI GGGAC 1 cut(s) 588
FatI CATG 5 cut(s) 97, 116, 240, 538, 580
Fnu4HI GCNGC 4 cut(s) 173, 256, 284, 369
FokI GGATG 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 4 cut(s) 173, 256, 284, 369
FspBI CTAG 3 cut(s) 63, 291, 564
GlaI GCGC 2 cut(s) 42, 96
GluI GCNGC 4 cut(s) 173, 256, 284, 369
GsaI CCCAGC 1 cut(s) 34
HaeIII GGCC 4 cut(s) 15, 172, 227, 237
HapII CCGG 5 cut(s) 147, 202, 214, 262, 697
HhaI GCGC 2 cut(s) 43, 97
Hin1I GRCGYC 1 cut(s) 554
Hin1II CATG 5 cut(s) 101, 120, 244, 542, 584
Hin6I GCGC 2 cut(s) 41, 95
HinP1I GCGC 2 cut(s) 41, 95
HinfI GANTC 2 cut(s) 113, 482
HpaII CCGG 5 cut(s) 147, 202, 214, 262, 697
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 250
Hpy188III TCNNGA 3 cut(s) 73, 356, 711
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 3 cut(s) 321, 398, 513
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 4 cut(s) 153, 167, 246, 554
HpyCH4V TGCA 2 cut(s) 192, 283
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 198, 384
HpyF3I CTNAG 3 cut(s) 6, 87, 222
HpySE526I ACGT 4 cut(s) 153, 167, 246, 554
Hsp92I GRCGYC 1 cut(s) 554
Hsp92II CATG 5 cut(s) 101, 120, 244, 542, 584
HspAI GCGC 2 cut(s) 41, 95
Kzo9I GATC 3 cut(s) 65, 629, 643
LguI GCTCTTC 1 cut(s) 672
LmnI GCTCC 4 cut(s) 39, 419, 451, 699
Lsp1109I GCAGC 1 cut(s) 295
MaeI CTAG 3 cut(s) 63, 291, 564
MaeII ACGT 4 cut(s) 153, 167, 246, 554
MalI GATC 3 cut(s) 67, 631, 645
MboI GATC 3 cut(s) 65, 629, 643
MfeI CAATTG 1 cut(s) 398
MhlI GDGCHC 3 cut(s) 164, 268, 696
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 6 cut(s) 46, 209, 331, 398, 592, 604
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 2 cut(s) 107, 491
Mox20I TGGCCA 1 cut(s) 237
MscI TGGCCA 1 cut(s) 237
MseI TTAA 2 cut(s) 465, 548
Msp20I TGGCCA 1 cut(s) 237
MspI CCGG 5 cut(s) 147, 202, 214, 262, 697
MspR9I CCNGG 1 cut(s) 263
MunI CAATTG 1 cut(s) 398
Mva1269I GAATGC 1 cut(s) 422
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 40, 198, 384
NciI CCSGG 1 cut(s) 263
NdeII GATC 3 cut(s) 65, 629, 643
NlaIII CATG 5 cut(s) 101, 120, 244, 542, 584
NlaIV GGNNCC 3 cut(s) 83, 163, 576
NmeAIII GCCGAG 1 cut(s) 201
PaqCI CACCTGC 1 cut(s) 197
PciSI GCTCTTC 1 cut(s) 672
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PctI GAATGC 1 cut(s) 422
PkrI GCNGC 4 cut(s) 174, 257, 285, 370
PleI GAGTC 2 cut(s) 107, 490
PmaCI CACGTG 1 cut(s) 168
PmlI CACGTG 1 cut(s) 168
PpsI GAGTC 2 cut(s) 107, 490
Ppu21I YACGTR 1 cut(s) 168
PpuMI RGGWCCY 1 cut(s) 575
Psp124BI GAGCTC 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 575
PspCI CACGTG 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 30
PspN4I GGNNCC 3 cut(s) 83, 163, 576
PspPI GGNCC 3 cut(s) 226, 575, 704
PspPPI RGGWCCY 1 cut(s) 575
RsaI GTAC 2 cut(s) 249, 501
RsaNI GTAC 2 cut(s) 248, 500
SacI GAGCTC 1 cut(s) 696
SapI GCTCTTC 1 cut(s) 672
SaqAI TTAA 2 cut(s) 465, 548
SatI GCNGC 4 cut(s) 173, 256, 284, 369
Sau3AI GATC 3 cut(s) 65, 629, 643
Sau96I GGNCC 3 cut(s) 226, 575, 704
SchI GAGTC 2 cut(s) 107, 491
ScrFI CCNGG 1 cut(s) 263
SduI GDGCHC 3 cut(s) 164, 268, 696
SinI GGWCC 2 cut(s) 575, 704
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 6 cut(s) 46, 209, 331, 398, 592, 604
SsiI CCGC 7 cut(s) 137, 173, 253, 256, 369, 378, 635
SspMI CTAG 3 cut(s) 63, 291, 564
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 4 cut(s) 156, 170, 249, 557
TaqII GACCGA 1 cut(s) 692
TasI AATT 6 cut(s) 46, 209, 331, 398, 592, 604
TauI GCSGC 3 cut(s) 175, 258, 371
Tru1I TTAA 2 cut(s) 465, 548
Tru9I TTAA 2 cut(s) 465, 548
TseI GCWGC 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 257, 327
VpaK11BI GGWCC 2 cut(s) 575, 704
XapI RAATTY 3 cut(s) 46, 209, 604
XspI CTAG 3 cut(s) 63, 291, 564
ZraI GACGTC 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.