AT4G17905

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011832
Physical Location & Seq
Reverse (-)
9948706 .. 9950041
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17905.1

Sequence Viewer

Length: 933 bp
ATGGAGTCTGATCCAAATCCTAGTGCTTGGAATCAATACATAAACCCAAGAGATTGTACTCAAGGCTTATGTTCCACATTTTGTCCTCAATGGTGTACTTACATCAACTTCTCTCCACCACCAATTTCTTATGAACAATTCCTAAACGATGGCGTTGCATCAAACCCCAATCTCTCCCCTCTTGTCATTGCTATTTTTGGAATATTTGCAACTGCCTTTCTCTTGGCAGCTTACTACACTCTTGTCTCAAAGTATTGCGCCAACGACACCACCAATGAAGCTGCCTCAGAATCCGGAAGATCGGATATAATTCTCGACGTTAACTCGCCGGAAAGAGGAGACCAAGACGATCCTTTTGCTCTTGAGTCTTCAACCGCCGGCTTAGATGATACTCTCATAAAAAAGATCGGTTTCTTCAAGTTAAAAAAGCATCAAAACGGTTTCAAGATCAACGGTACGGATTGTTCAATATGTCTTGGAGAGTTTAACGAAGACGAGAGCTTAAGGTTATTACCTAAATGCAACCACACCTTTCATGTCGTTTGTATCGATCGGTGGCTCAAATCTCACTCAAACTGTCCGCTTTGTCGGGCTAAGATCATCGTCCCTACCACTCAACAACCTGAACATCATGTTGTGGTGATGAATCTTGATCGGTTTACGAGCAATGTTGGATCAGCAGAAGGAAATGTAGTCGTTGATGATCATCGTGAAGAGGTTAGTGTTTCGATTAGTTCTCATCATCCAAGTTGGTTCTCGGCCGCGGATATTGTTCTGCGGATAAGCAGGGACGGAGAAGAGGAAGAGGGAAATTATGATCTTGAAAATGGAAACAGAGAGAAACTTGTAGACTTGAAAAGATCATTCTCAAGTGGTGGCTTGGTTCTTGGGACTCAAGGAAGGACTAGAAGATCCCTAAACATATGTCCTTAA

Protein Analysis

310

Amino Acids

34.43

Weight (kDa)

5.11

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 154 - 197 3.6e-15 Ring finger domain
zf-RING_11 PF17123 154 - 183 3.5e-11 RING-like zinc finger
zf-C3HC4_2 PF13923 155 - 196 2.2e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 155 - 196 2.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 163 - 197 2.7e-09 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011832)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17905 AT4G17905
fragaria_vesca FvH4_5g22340
malus_domestica MD00G1071800.v1.1 MD06G1035800.v1.1
prunus_persica Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1
pyrus_communis pycom16g24230
rosa_chinensis RchiOBHm_Chr7g0210051
rosa_laevigata RLG00000003068
rosa_multiflora Rmu_sc0004509.1_g000028
rosa_roxburghii Rroxscaffold_3G00248650
rosa_rugosa Rorug07G0118100
rosa_samantha Rh7BG246500 Rh7CG268700 Rh7DG258800
rosa_wichuraiana Rw7G021390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 849
AccII CGCG 1 cut(s) 764
AccIII TCCGGA 1 cut(s) 293
AciI CCGC 5 cut(s) 375, 581, 762, 764, 778
AclWI GGATC 4 cut(s) 5, 344, 682, 906
AcoI YGGCCR 1 cut(s) 759
AfaI GTAC 3 cut(s) 58, 97, 457
AfiI CCNNNNNNNGG 1 cut(s) 335
AflII CTTAAG 1 cut(s) 502
AgsI TTSAA 6 cut(s) 372, 418, 445, 468, 824, 856
AluBI AGCT 3 cut(s) 230, 281, 501
AluI AGCT 3 cut(s) 230, 281, 501
Alw26I GTCTC 2 cut(s) 250, 333
AlwI GGATC 4 cut(s) 5, 344, 682, 906
Aor13HI TCCGGA 1 cut(s) 293
AoxI GGCC 1 cut(s) 759
ApeKI GCWGC 2 cut(s) 227, 281
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AspLEI GCGC 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 652
BbsI GAAGAC 2 cut(s) 360, 498
BbvI GCAGC 2 cut(s) 239, 268
BccI CCATC 1 cut(s) 143
BcgI CGANNNNNNTGC 4 cut(s) 137, 171, 338, 372
BclI TGATCA 1 cut(s) 703
BcoDI GTCTC 2 cut(s) 250, 333
BfaI CTAG 2 cut(s) 21, 906
BfrI CTTAAG 1 cut(s) 502
BisI GCNGC 3 cut(s) 228, 282, 762
BlsI GCNGC 3 cut(s) 229, 283, 763
BmsI GCATC 2 cut(s) 167, 439
BpiI GAAGAC 2 cut(s) 360, 498
BpuEI CTTGAG 4 cut(s) 45, 383, 853, 879
Bsa29I ATCGAT 1 cut(s) 549
BsaBI GATNNNNATC 2 cut(s) 15, 705
BsaI GGTCTC 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 762
BsaWI WCCGGW 1 cut(s) 293
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse118I RCCGGY 1 cut(s) 377
Bse3DI GCAATG 2 cut(s) 186, 673
Bse8I GATNNNNATC 2 cut(s) 15, 705
BseAI TCCGGA 1 cut(s) 293
BseCI ATCGAT 1 cut(s) 549
BseDI CCNNGG 1 cut(s) 762
BseGI GGATG 1 cut(s) 742
BseJI GATNNNNATC 2 cut(s) 15, 705
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMI GCAATG 2 cut(s) 186, 673
BseMII CTCAG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 351
BseX3I CGGCCG 1 cut(s) 759
BseXI GCAGC 2 cut(s) 239, 268
Bsh1236I CGCG 1 cut(s) 764
Bsh1285I CGRYCG 2 cut(s) 553, 762
BshFI GGCC 1 cut(s) 761
BshVI ATCGAT 1 cut(s) 549
BsiEI CGRYCG 2 cut(s) 553, 762
BsiSI CCGG 3 cut(s) 294, 329, 378
BslFI GGGAC 3 cut(s) 590, 803, 904
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 2 cut(s) 250, 333
BsmFI GGGAC 3 cut(s) 590, 803, 904
BsnI GGCC 1 cut(s) 761
Bso31I GGTCTC 1 cut(s) 333
Bsp13I TCCGGA 1 cut(s) 293
BspACI CCGC 5 cut(s) 375, 581, 762, 764, 778
BspANI GGCC 1 cut(s) 761
BspCNI CTCAG 1 cut(s) 299
BspDI ATCGAT 1 cut(s) 549
BspEI TCCGGA 1 cut(s) 293
BspFNI CGCG 1 cut(s) 764
BspPI GGATC 4 cut(s) 5, 344, 682, 906
BspTI CTTAAG 1 cut(s) 502
BspTNI GGTCTC 1 cut(s) 333
BsrDI GCAATG 2 cut(s) 186, 673
BsrFI RCCGGY 1 cut(s) 377
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 762
Bst4CI ACNGT 3 cut(s) 440, 455, 578
Bst6I CTCTTC 3 cut(s) 708, 792, 798
BstAFI CTTAAG 1 cut(s) 502
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 3 cut(s) 286, 382, 594
BstDSI CCRYGG 1 cut(s) 762
BstF5I GGATG 1 cut(s) 742
BstFNI CGCG 1 cut(s) 764
BstHHI GCGC 1 cut(s) 260
BstMAI GTCTC 2 cut(s) 250, 333
BstMCI CGRYCG 2 cut(s) 553, 762
BstUI CGCG 1 cut(s) 764
BstV1I GCAGC 2 cut(s) 239, 268
BstV2I GAAGAC 2 cut(s) 360, 498
BstX2I RGATCY 1 cut(s) 911
BstYI RGATCY 1 cut(s) 911
BstZI CGGCCG 1 cut(s) 759
Bsu15I ATCGAT 1 cut(s) 549
BsuRI GGCC 1 cut(s) 761
BsuTUI ATCGAT 1 cut(s) 549
BtgI CCRYGG 1 cut(s) 762
BtsCI GGATG 1 cut(s) 742
Cac8I GCNNGC 1 cut(s) 379
CfoI GCGC 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 377
Cfr42I CCGCGG 1 cut(s) 765
ClaI ATCGAT 1 cut(s) 549
Csp6I GTAC 3 cut(s) 57, 96, 456
CviAII CATG 2 cut(s) 536, 632
CviJI RGCY 9 cut(s) 66, 230, 281, 381, 501, 559, 593, 761, 879
CviKI_1 RGCY 9 cut(s) 66, 230, 281, 381, 501, 559, 593, 761, 879
CviQI GTAC 3 cut(s) 57, 96, 456
DdeI CTNAG 3 cut(s) 286, 382, 594
EaeI YGGCCR 1 cut(s) 759
EagI CGGCCG 1 cut(s) 759
Eam1104I CTCTTC 3 cut(s) 708, 792, 798
EarI CTCTTC 3 cut(s) 708, 792, 798
EclXI CGGCCG 1 cut(s) 759
Eco31I GGTCTC 1 cut(s) 333
Eco52I CGGCCG 1 cut(s) 759
FaeI CATG 2 cut(s) 539, 635
FaqI GGGAC 3 cut(s) 590, 803, 904
FatI CATG 2 cut(s) 535, 631
FauNDI CATATG 1 cut(s) 923
FbaI TGATCA 1 cut(s) 703
FblI GTMKAC 1 cut(s) 849
Fnu4HI GCNGC 3 cut(s) 228, 282, 762
FokI GGATG 1 cut(s) 729
Fsp4HI GCNGC 3 cut(s) 228, 282, 762
FspBI CTAG 2 cut(s) 21, 906
GlaI GCGC 1 cut(s) 259
GluI GCNGC 3 cut(s) 228, 282, 762
HaeIII GGCC 1 cut(s) 761
HapII CCGG 3 cut(s) 294, 329, 378
HhaI GCGC 1 cut(s) 260
Hin1II CATG 2 cut(s) 539, 635
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 6 cut(s) 5, 31, 290, 365, 646, 892
HpaI GTTAAC 1 cut(s) 322
HpaII CCGG 3 cut(s) 294, 329, 378
HphI GGTGA 1 cut(s) 652
Hpy166II GTNNAC 4 cut(s) 96, 322, 660, 850
Hpy188I TCNGA 3 cut(s) 10, 289, 304
Hpy188III TCNNGA 7 cut(s) 294, 314, 362, 445, 650, 710, 821
Hpy8I GTNNAC 4 cut(s) 96, 322, 660, 850
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 2 cut(s) 677, 894
HpyCH4III ACNGT 3 cut(s) 440, 455, 578
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 3 cut(s) 158, 209, 522
HpyF3I CTNAG 3 cut(s) 286, 382, 594
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 2 cut(s) 539, 635
HspAI GCGC 1 cut(s) 258
Kpn2I TCCGGA 1 cut(s) 293
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 703
KspAI GTTAAC 1 cut(s) 322
KspI CCGCGG 1 cut(s) 765
LpnPI CCDG 5 cut(s) 307, 342, 391, 636, 772
Lsp1109I GCAGC 2 cut(s) 239, 268
LweI GCATC 2 cut(s) 167, 439
MaeI CTAG 2 cut(s) 21, 906
MaeII ACGT 1 cut(s) 318
MboII GAAGA 8 cut(s) 309, 360, 406, 503, 725, 809, 815, 921
MflI RGATCY 1 cut(s) 911
MluCI AATT 4 cut(s) 123, 137, 309, 811
MlyI GAGTC 3 cut(s) 14, 374, 886
MmeI TCCRAC 1 cut(s) 652
MnlI CCTC 7 cut(s) 96, 189, 295, 329, 709, 793, 799
MroI TCCGGA 1 cut(s) 293
MroNI GCCGGC 1 cut(s) 377
MseI TTAA 5 cut(s) 321, 422, 486, 503, 931
MspA1I CMGCKG 1 cut(s) 764
MspCI CTTAAG 1 cut(s) 502
MspI CCGG 3 cut(s) 294, 329, 378
MvnI CGCG 1 cut(s) 764
NaeI GCCGGC 1 cut(s) 379
NdeI CATATG 1 cut(s) 923
NgoMIV GCCGGC 1 cut(s) 377
NlaIII CATG 2 cut(s) 539, 635
NmeAIII GCCGAG 1 cut(s) 737
PcsI WCGNNNNNNNCGW 1 cut(s) 546
PdiI GCCGGC 1 cut(s) 379
PfeI GAWTC 3 cut(s) 31, 290, 646
PkrI GCNGC 3 cut(s) 229, 283, 763
Ple19I CGATCG 1 cut(s) 553
PleI GAGTC 3 cut(s) 13, 373, 886
PpsI GAGTC 3 cut(s) 13, 373, 886
PsrI GAACNNNNNNTAC 2 cut(s) 448, 480
PsuI RGATCY 1 cut(s) 911
PvuI CGATCG 1 cut(s) 553
RsaI GTAC 3 cut(s) 58, 97, 457
RsaNI GTAC 3 cut(s) 57, 96, 456
SacII CCGCGG 1 cut(s) 765
SaqAI TTAA 5 cut(s) 321, 422, 486, 503, 931
SatI GCNGC 3 cut(s) 228, 282, 762
SchI GAGTC 3 cut(s) 14, 374, 886
SetI ASST 9 cut(s) 232, 283, 321, 503, 509, 517, 533, 625, 720
SfaNI GCATC 2 cut(s) 167, 439
Sfr303I CCGCGG 1 cut(s) 765
SgrBI CCGCGG 1 cut(s) 765
SmlI CTYRAG 5 cut(s) 60, 362, 502, 868, 894
SmoI CTYRAG 5 cut(s) 60, 362, 502, 868, 894
Sse9I AATT 4 cut(s) 123, 137, 309, 811
SsiI CCGC 5 cut(s) 375, 581, 762, 764, 778
SspI AATATT 1 cut(s) 204
SspMI CTAG 2 cut(s) 21, 906
TaaI ACNGT 3 cut(s) 440, 455, 578
TaiI ACGT 1 cut(s) 321
TaqI TCGA 3 cut(s) 315, 549, 728
TasI AATT 4 cut(s) 123, 137, 309, 811
TatI WGTACW 2 cut(s) 56, 95
TauI GCSGC 1 cut(s) 764
TfiI GAWTC 3 cut(s) 31, 290, 646
Tru1I TTAA 5 cut(s) 321, 422, 486, 503, 931
Tru9I TTAA 5 cut(s) 321, 422, 486, 503, 931
TseI GCWGC 2 cut(s) 227, 281
TspDTI ATGAA 4 cut(s) 147, 291, 524, 659
TspGWI ACGGA 2 cut(s) 473, 807
Vha464I CTTAAG 1 cut(s) 502
XmiI GTMKAC 1 cut(s) 849
XspI CTAG 2 cut(s) 21, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.