Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011832

Physical Location & Seq

Genomic Coordinates Reverse (-)

42001131 .. 42002796

Gene Structure 1666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGGTCTATAGGCAGTAGTAGTAGTTCAAAAACTTGGATACCATATATGAACAGCAGAGACTGTTCTCAAGGCTTTTGTAGTTTGTACTGTCCACAATGGTGCTACATCGTAATACCACCCCCTCCTTCCTTTGAGTTTCCTCAGGACAATTCATCTTCATCTCCAAATTTCTCTCCTCTTGTTATCGCAATCATCGGCATTTTGGTGAGTGCCTTTCTTCTTGTGAGCTACTACACCATAATGTCCAAGTACTGCGGTAACGAGGACCGAAGAAGATCAACAAGCAGAGAAGACTATGGCCAGAATGAGGAGCTGGATGGTACCCAAAATCCTTCTATCCATGAACCGTGGTATGTTGTGACTGTCGGCTTGGATGAAGGTGTGATAAAGTCGTTGGGAGTTTATAAGTACAAGAATGGAGATGACTTAGTTGAAGGGACGGATTGCGCTGTCTGTCTGAGTGAGTTTGAAGAAGATGAGAGCCTGAGGCTGTTGCCCAAGTGCAACCATGCTTTTCATCTTCCATGTATTGATACATGGCTCAAGTCTCACTCGAATTGCCCTCTATGTCGTGCTAGCGTGGTTTCGACGAATGCTCCAACACATCAATTGCCTCCTGTTGTGACTGAAACTCCTCCAAGCAGTAGCAATGAAGATGAAAATGTAATCATGGGGGCACAAGTTTCAGAGATGGGTCATCCTCGAAATGTGGAGATATTGCATGGAGATGTCATTCCAAAGACACCAGTACGCGCTTTTAGTGATTTGGGTAATTCAGAAGAGAGGGATACCATAATAGAGATTGAAAGTGATGATACATTTGATCAAACTGTCAGAAGGTCAGTCTCCATGGACTATTTATGTCAGAATAATCGCATTTTAGTTGCCGATATTCTCCGCACGAATGATGAAGAAGATGAAGAACATGTGCAAGGGTGCTCAGAGTCAGGGTCAGATGAGATTGCAGGTTCTTCAAAACAATCAGTAGCTGGAGGAGTTGGAACTCATATCCACAGAAAAGAGACTCTGAGGCATGTTTCAATGAAGAGATCATTTTCAGGCGGAAGATTGTTTCTAACTAGGCCTGCAAGAGCAAGGCATATAGTAATTCCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

373

Amino Acids

41.37

Weight (kDa)

5.02

Isoelectric Point (pI)

59.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	149 - 192	1.5e-14	Ring finger domain
zf-RING_11	PF17123	149 - 178	1.2e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	150 - 191	1.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	150 - 191	3.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	153 - 192	3.2e-09	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	157 - 195	3.8e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17905 AT4G17905
fragaria_vesca	FvH4_5g22340
malus_domestica	MD00G1071800.v1.1 MD06G1035800.v1.1
prunus_persica	Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1
pyrus_communis	pycom16g24230
rosa_chinensis	RchiOBHm_Chr7g0210051
rosa_laevigata	RLG00000003068
rosa_multiflora	Rmu_sc0004509.1_g000028
rosa_roxburghii	Rroxscaffold_3G00248650
rosa_rugosa	Rorug07G0118100
rosa_samantha	Rh7BG246500 Rh7CG268700 Rh7DG258800
rosa_wichuraiana	Rw7G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	959
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	323
AccII	CGCG	1 cut(s)	756
AciI	CCGC	3 cut(s)	258, 901, 1065
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	169
AfaI	GTAC	5 cut(s)	89, 254, 325, 413, 753
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	928
AgsI	TTSAA	6 cut(s)	30, 437, 473, 809, 978, 1044
AleI	CACNNNNGTG	1 cut(s)	100
AluBI	AGCT	3 cut(s)	231, 316, 992
AluI	AGCT	3 cut(s)	231, 316, 992
Alw21I	GWGCWC	1 cut(s)	944
Alw26I	GTCTC	4 cut(s)	54, 555, 853, 1019
AlwNI	CAGNNNCTG	2 cut(s)	63, 992
AoxI	GGCC	2 cut(s)	301, 1085
ApoI	RAATTY	1 cut(s)	169
Asp718I	GGTACC	1 cut(s)	323
AspLEI	GCGC	2 cut(s)	452, 758
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	220
AsuNHI	GCTAGC	1 cut(s)	578
AvaII	GGWCC	1 cut(s)	268
AxyI	CCTNAGG	2 cut(s)	144, 488
BaeGI	GKGCMC	1 cut(s)	682
BalI	TGGCCA	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	944
BccI	CCATC	2 cut(s)	314, 688
BciVI	GTATCC	2 cut(s)	33, 784
BclI	TGATCA	1 cut(s)	826
BcoDI	GTCTC	4 cut(s)	54, 555, 853, 1019
BfaI	CTAG	3 cut(s)	579, 1083, 1120
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	959
BfuI	GTATCC	2 cut(s)	33, 784
BmcAI	AGTACT	1 cut(s)	254
Bme18I	GGWCC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	325
BmtI	GCTAGC	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	1014
BpuEI	CTTGAG	2 cut(s)	54, 530
BsaJI	CCNNGG	2 cut(s)	350, 852
BsaXI	ACNNNNNCTCC	4 cut(s)	583, 613, 619, 649
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	749
Bse21I	CCTNAGG	2 cut(s)	144, 488
Bse3DI	GCAATG	1 cut(s)	658
BseDI	CCNNGG	2 cut(s)	350, 852
BseGI	GGATG	3 cut(s)	325, 382, 700
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMI	GCAATG	1 cut(s)	658
BseMII	CTCAG	5 cut(s)	158, 452, 479, 957, 1022
BseNI	ACTGG	1 cut(s)	749
BseRI	GAGGAG	4 cut(s)	168, 326, 627, 1011
BseSI	GKGCMC	1 cut(s)	682
Bsh1236I	CGCG	1 cut(s)	756
BshFI	GGCC	2 cut(s)	303, 1087
BshNI	GGYRCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	944
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	4 cut(s)	54, 555, 853, 1019
BsmFI	GGGAC	1 cut(s)	454
BsmI	GAATGC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	303, 1087
Bsp1286I	GDGCHC	2 cut(s)	682, 944
Bsp143I	GATC	3 cut(s)	278, 826, 1052
Bsp19I	CCATGG	1 cut(s)	852
BspACI	CCGC	3 cut(s)	258, 901, 1065
BspANI	GGCC	2 cut(s)	303, 1087
BspCNI	CTCAG	5 cut(s)	157, 453, 480, 956, 1023
BspFNI	CGCG	1 cut(s)	756
BspLI	GGNNCC	1 cut(s)	325
BspMI	ACCTGC	1 cut(s)	959
BspOI	GCTAGC	1 cut(s)	582
BspT107I	GGYRCC	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	658
BsrI	ACTGG	1 cut(s)	749
BssECI	CCNNGG	2 cut(s)	350, 852
BssMI	GATC	3 cut(s)	278, 826, 1052
BssT1I	CCWWGG	1 cut(s)	852
Bst4CI	ACNGT	5 cut(s)	65, 92, 351, 367, 835
Bst6I	CTCTTC	2 cut(s)	777, 1043
BstC8I	GCNNGC	2 cut(s)	580, 1089
BstDEI	CTNAG	6 cut(s)	144, 430, 461, 488, 943, 1031
BstDSI	CCRYGG	2 cut(s)	350, 852
BstF5I	GGATG	3 cut(s)	325, 382, 700
BstFNI	CGCG	1 cut(s)	756
BstHHI	GCGC	2 cut(s)	452, 758
BstKTI	GATC	3 cut(s)	281, 829, 1055
BstMAI	GTCTC	4 cut(s)	54, 555, 853, 1019
BstMBI	GATC	3 cut(s)	278, 826, 1052
BstNSI	RCATGY	2 cut(s)	932, 1040
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	682
BstUI	CGCG	1 cut(s)	756
BstV2I	GAAGAC	1 cut(s)	300
Bsu36I	CCTNAGG	2 cut(s)	144, 488
BsuI	GTATCC	2 cut(s)	33, 784
BsuRI	GGCC	2 cut(s)	303, 1087
BtgI	CCRYGG	2 cut(s)	350, 852
BtsCI	GGATG	3 cut(s)	325, 382, 700
BveI	ACCTGC	1 cut(s)	959
Cac8I	GCNNGC	2 cut(s)	580, 1089
CaiI	CAGNNNCTG	2 cut(s)	63, 992
CfoI	GCGC	2 cut(s)	452, 758
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	5 cut(s)	88, 253, 324, 412, 752
CviAII	CATG	9 cut(s)	344, 512, 528, 540, 673, 725, 853, 929, 1037
CviQI	GTAC	5 cut(s)	88, 253, 324, 412, 752
DdeI	CTNAG	6 cut(s)	144, 430, 461, 488, 943, 1031
DpnI	GATC	3 cut(s)	280, 828, 1054
DpnII	GATC	3 cut(s)	278, 826, 1052
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	2 cut(s)	777, 1043
EarI	CTCTTC	2 cut(s)	777, 1043
EciI	GGCGGA	1 cut(s)	1080
Eco130I	CCWWGG	1 cut(s)	852
Eco147I	AGGCCT	1 cut(s)	1087
Eco47I	GGWCC	1 cut(s)	268
Eco81I	CCTNAGG	2 cut(s)	144, 488
EcoT14I	CCWWGG	1 cut(s)	852
ErhI	CCWWGG	1 cut(s)	852
FaeI	CATG	9 cut(s)	347, 515, 531, 543, 676, 728, 856, 932, 1040
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	9 cut(s)	343, 511, 527, 539, 672, 724, 852, 928, 1036
FbaI	TGATCA	1 cut(s)	826
FokI	GGATG	3 cut(s)	332, 389, 687
FspBI	CTAG	3 cut(s)	579, 1083, 1120
GlaI	GCGC	2 cut(s)	451, 757
GsuI	CTGGAG	1 cut(s)	1014
HaeIII	GGCC	2 cut(s)	303, 1087
HhaI	GCGC	2 cut(s)	452, 758
Hin1II	CATG	9 cut(s)	347, 515, 531, 543, 676, 728, 856, 932, 1040
Hin6I	GCGC	2 cut(s)	450, 756
HinP1I	GCGC	2 cut(s)	450, 756
HinfI	GANTC	2 cut(s)	947, 1027
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	8 cut(s)	462, 691, 781, 839, 870, 946, 958, 1032
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	95
Hpy99I	CGWCG	1 cut(s)	595
HpyAV	CCTTC	5 cut(s)	138, 345, 374, 431, 834
HpyCH4III	ACNGT	5 cut(s)	65, 92, 351, 367, 835
HpyCH4V	TGCA	5 cut(s)	507, 724, 934, 968, 1091
HpyF3I	CTNAG	6 cut(s)	144, 430, 461, 488, 943, 1031
Hsp92II	CATG	9 cut(s)	347, 515, 531, 543, 676, 728, 856, 932, 1040
HspAI	GCGC	2 cut(s)	450, 756
KpnI	GGTACC	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	826
Kzo9I	GATC	3 cut(s)	278, 826, 1052
LmnI	GCTCC	2 cut(s)	313, 604
MaeI	CTAG	3 cut(s)	579, 1083, 1120
MaeIII	GTNAC	3 cut(s)	260, 361, 625
MalI	GATC	3 cut(s)	280, 828, 1054
MboI	GATC	3 cut(s)	278, 826, 1052
MfeI	CAATTG	1 cut(s)	611
MhlI	GDGCHC	2 cut(s)	682, 944
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	6 cut(s)	151, 169, 559, 611, 775, 1110
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	2 cut(s)	956, 1021
MmeI	TCCRAC	2 cut(s)	626, 982
Mox20I	TGGCCA	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	303
MslI	CAYNNNNRTG	4 cut(s)	100, 206, 242, 729
Msp20I	TGGCCA	1 cut(s)	303
MunI	CAATTG	1 cut(s)	611
Mva1269I	GAATGC	1 cut(s)	601
MvnI	CGCG	1 cut(s)	756
NcoI	CCATGG	1 cut(s)	852
NdeII	GATC	3 cut(s)	278, 826, 1052
NheI	GCTAGC	1 cut(s)	578
NlaIII	CATG	9 cut(s)	347, 515, 531, 543, 676, 728, 856, 932, 1040
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	2 cut(s)	361, 625
NspI	RCATGY	2 cut(s)	932, 1040
OliI	CACNNNNGTG	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	1087
PciI	ACATGT	1 cut(s)	928
PctI	GAATGC	1 cut(s)	601
PleI	GAGTC	2 cut(s)	955, 1021
PpsI	GAGTC	2 cut(s)	955, 1021
PscI	ACATGT	1 cut(s)	928
PsiI	TTATAA	1 cut(s)	408
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	268
PsrI	GAACNNNNNNTAC	2 cut(s)	10, 42
PstNI	CAGNNNCTG	2 cut(s)	63, 992
RsaI	GTAC	5 cut(s)	89, 254, 325, 413, 753
RsaNI	GTAC	5 cut(s)	88, 253, 324, 412, 752
RseI	CAYNNNNRTG	4 cut(s)	100, 206, 242, 729
Sau3AI	GATC	3 cut(s)	278, 826, 1052
Sau96I	GGNCC	1 cut(s)	268
ScaI	AGTACT	1 cut(s)	254
SchI	GAGTC	2 cut(s)	956, 1021
SduI	GDGCHC	2 cut(s)	682, 944
SetI	ASST	6 cut(s)	233, 318, 385, 845, 973, 994
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	4 cut(s)	100, 206, 242, 729
SmlI	CTYRAG	2 cut(s)	69, 545
SmoI	CTYRAG	2 cut(s)	69, 545
Sse9I	AATT	6 cut(s)	151, 169, 559, 611, 775, 1110
SseBI	AGGCCT	1 cut(s)	1087
SsiI	CCGC	3 cut(s)	258, 901, 1065
SspMI	CTAG	3 cut(s)	579, 1083, 1120
StuI	AGGCCT	1 cut(s)	1087
StyI	CCWWGG	1 cut(s)	852
TaaI	ACNGT	5 cut(s)	65, 92, 351, 367, 835
TaqI	TCGA	3 cut(s)	557, 590, 706
TaqII	GACCGA	1 cut(s)	285
TasI	AATT	6 cut(s)	151, 169, 559, 611, 775, 1110
TatI	WGTACW	3 cut(s)	87, 252, 411
TseFI	GTSAC	2 cut(s)	361, 625
Tsp45I	GTSAC	2 cut(s)	361, 625
TspGWI	ACGGA	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	2 cut(s)	932, 1040
XspI	CTAG	3 cut(s)	579, 1083, 1120
ZrmI	AGTACT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.