Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011832

Physical Location & Seq

Genomic Coordinates Reverse (-)

3863371 .. 3865722

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G033900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGGTCTCTAGGAGGCAGCCCAAAAACTTGGATACCATATATGAACACCAAAGATTGTTCTCAAGGGTTTTGCAGTTTGTACTGTCCACAATGGTGTTACAAGATAATACCTCCTCCACCTGTCTTTGAGTTTCCTGAAGACAATTCATCTTCCCCAAGTTTCTCTCCTCTTGTTATTGCAATTATTGGCATTTTGGTGAGTGCTTTTCTTCTTGTTAGCTACTACACCATAATATCCAAGTACTGCAGCAATGCGGACCGGAGGAGAGCGAGAAGAGAGGATCAGGAGCAGAATGAGGAGATGGAGGACCCTCACAATCCCTCCATCCATGAACCCTGGCATGTCGTGACGGCCGGCTTAGACGAGGCTCTGATCAAGTCATTAACAGTTTGTAAGTACAAGAAAGGAGATGGATTTGTTGAAGGAACAGATTGCTCAGTTTGTCTGAGTGAGTTTGAAGAAGATGAGAGGCTTAGGCTGTTGCCTAAGTGCAACCATGCTTTCCATCTCCCATGCATTGATACATGGCTTAAATCTCACTCAAATTGCCCGTTGTGTCGTGCCAACATAGTTCCTCATCAGTTGCCTCACCCTGCCGTGACTGAAACTCCATCATCAACCAATCATGATGCATCATCCATAGCTGAAAGCCAACCAGCACATGATCAAAATGTTGTCATGGCACAAATTTCCGAAGGGGGTCCTTCTCAAAATGTGGAATCAATGCAAGGAGATCATGAAGGGTATCATCAAGCAATTAGAAGGTCGGTTTCCATGGACGATTGGCGTCAGAATAATCAAGTTTTAGTAGCTGATATTCTGAGCAGGAATGATGAAGAGGATGAGGAGGACGATATGAACTCAGAGTCAGATGATATTGCTGAAGGAGTTGACAAATCTAGCAATAGAAAAGGGGTGCTCCTGCATTGTGTTATGAGTCCTGTTGCAATGAAGAGATCATTTTCAAGTGGAAGATTCTTTCCCACTAGGCCTTCAAGAGCACGGAATACAGTACTTCCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

343

Amino Acids

38.27

Weight (kDa)

5.16

Isoelectric Point (pI)

61.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17905 AT4G17905
fragaria_vesca	FvH4_5g22340
malus_domestica	MD00G1071800.v1.1 MD06G1035800.v1.1
prunus_persica	Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1
pyrus_communis	pycom16g24230
rosa_chinensis	RchiOBHm_Chr7g0210051
rosa_laevigata	RLG00000003068
rosa_multiflora	Rmu_sc0004509.1_g000028
rosa_roxburghii	Rroxscaffold_3G00248650
rosa_rugosa	Rorug07G0118100
rosa_samantha	Rh7BG246500 Rh7CG268700 Rh7DG258800
rosa_wichuraiana	Rw7G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	1 cut(s)	291
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	690
AcuI	CTGAAG	2 cut(s)	159, 906
AcyI	GRCGYC	1 cut(s)	790
AfaI	GTAC	4 cut(s)	83, 245, 401, 1017
AgsI	TTSAA	4 cut(s)	425, 461, 969, 999
AjnI	CCWGG	1 cut(s)	338
AleI	CACNNNNGTG	1 cut(s)	94
AluBI	AGCT	3 cut(s)	222, 647, 815
AluI	AGCT	3 cut(s)	222, 647, 815
Alw21I	GWGCWC	2 cut(s)	924, 1006
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	291
AoxI	GGCC	2 cut(s)	354, 992
ApeKI	GCWGC	2 cut(s)	18, 249
ApoI	RAATTY	1 cut(s)	690
AspS9I	GGNCC	3 cut(s)	259, 310, 704
AsuHPI	GGTGA	2 cut(s)	211, 584
AvaII	GGWCC	3 cut(s)	259, 310, 704
BbsI	GAAGAC	1 cut(s)	147
Bbv12I	GWGCWC	2 cut(s)	924, 1006
BbvI	GCAGC	2 cut(s)	30, 261
BccI	CCATC	5 cut(s)	298, 335, 407, 516, 622
BceAI	ACGGC	2 cut(s)	369, 584
BciT130I	CCWGG	1 cut(s)	340
BciVI	GTATCC	1 cut(s)	27
BclI	TGATCA	2 cut(s)	375, 667
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	4 cut(s)	11, 903, 990, 1027
BfmI	CTRYAG	1 cut(s)	247
BfuI	GTATCC	1 cut(s)	27
BisI	GCNGC	2 cut(s)	19, 250
BlsI	GCNGC	2 cut(s)	20, 251
BmcAI	AGTACT	2 cut(s)	245, 1017
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	3 cut(s)	259, 310, 704
BmgT120I	GGNCC	3 cut(s)	259, 310, 704
BmiI	GGNNCC	2 cut(s)	312, 705
BmrFI	CCNGG	1 cut(s)	340
BmsI	GCATC	2 cut(s)	622, 644
BpiI	GAAGAC	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	790
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	2 cut(s)	338, 777
BsaWI	WCCGGW	1 cut(s)	261
BsaXI	ACNNNNNCTCC	4 cut(s)	308, 338, 595, 625
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	1 cut(s)	1022
Bse3DI	GCAATG	2 cut(s)	259, 957
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	2 cut(s)	338, 777
BseGI	GGATG	3 cut(s)	327, 638, 850
BseMI	GCAATG	2 cut(s)	259, 957
BseMII	CTCAG	4 cut(s)	440, 453, 815, 879
BseNI	ACTGG	1 cut(s)	1022
BseRI	GAGGAG	5 cut(s)	105, 159, 280, 314, 863
BseX3I	CGGCCG	1 cut(s)	354
BseXI	GCAGC	2 cut(s)	30, 261
Bsh1285I	CGRYCG	1 cut(s)	357
BshFI	GGCC	2 cut(s)	356, 994
BsiEI	CGRYCG	1 cut(s)	357
BsiHKAI	GWGCWC	2 cut(s)	924, 1006
BsiSI	CCGG	2 cut(s)	262, 357
BsmAI	GTCTC	1 cut(s)	12
BsnI	GGCC	2 cut(s)	356, 994
Bso31I	GGTCTC	1 cut(s)	12
Bsp1286I	GDGCHC	2 cut(s)	924, 1006
Bsp143I	GATC	5 cut(s)	283, 375, 667, 736, 959
Bsp19I	CCATGG	1 cut(s)	777
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	2 cut(s)	356, 994
BspCNI	CTCAG	4 cut(s)	441, 452, 816, 878
BspHI	TCATGA	2 cut(s)	628, 739
BspLI	GGNNCC	2 cut(s)	312, 705
BspMAI	CTGCAG	1 cut(s)	251
BspPI	GGATC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	12
BsrDI	GCAATG	2 cut(s)	259, 957
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	1 cut(s)	1022
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	338, 777
BssMI	GATC	5 cut(s)	283, 375, 667, 736, 959
BssNI	GRCGYC	1 cut(s)	790
BssT1I	CCWWGG	1 cut(s)	777
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	3 cut(s)	86, 391, 1015
Bst6I	CTCTTC	3 cut(s)	271, 834, 950
BstACI	GRCGYC	1 cut(s)	790
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	7 cut(s)	361, 439, 449, 476, 489, 824, 865
BstDSI	CCRYGG	1 cut(s)	777
BstF5I	GGATG	3 cut(s)	327, 638, 850
BstKTI	GATC	5 cut(s)	286, 378, 670, 739, 962
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	5 cut(s)	283, 375, 667, 736, 959
BstMCI	CGRYCG	1 cut(s)	357
BstNI	CCWGG	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	30, 261
BstV2I	GAAGAC	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	30
BstZI	CGGCCG	1 cut(s)	354
BsuI	GTATCC	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	356, 994
BtgI	CCRYGG	1 cut(s)	777
BtsCI	GGATG	3 cut(s)	327, 638, 850
Cac8I	GCNNGC	1 cut(s)	358
CciI	TCATGA	2 cut(s)	628, 739
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	3 cut(s)	259, 310, 704
CpoI	CGGWCCG	1 cut(s)	259
CseI	GACGC	1 cut(s)	779
Csp6I	GTAC	4 cut(s)	82, 244, 400, 1016
CspI	CGGWCCG	1 cut(s)	259
CviQI	GTAC	4 cut(s)	82, 244, 400, 1016
DdeI	CTNAG	7 cut(s)	361, 439, 449, 476, 489, 824, 865
DpnI	GATC	5 cut(s)	285, 377, 669, 738, 961
DpnII	GATC	5 cut(s)	283, 375, 667, 736, 959
EaeI	YGGCCR	1 cut(s)	354
EagI	CGGCCG	1 cut(s)	354
Eam1104I	CTCTTC	3 cut(s)	271, 834, 950
EarI	CTCTTC	3 cut(s)	271, 834, 950
EclXI	CGGCCG	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	777
Eco147I	AGGCCT	1 cut(s)	994
Eco31I	GGTCTC	1 cut(s)	12
Eco47I	GGWCC	3 cut(s)	259, 310, 704
Eco52I	CGGCCG	1 cut(s)	354
Eco57I	CTGAAG	2 cut(s)	159, 906
EcoO109I	RGGNCCY	2 cut(s)	310, 704
EcoRII	CCWGG	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	777
EcoT22I	ATGCAT	2 cut(s)	521, 637
ErhI	CCWWGG	1 cut(s)	777
FbaI	TGATCA	2 cut(s)	375, 667
Fnu4HI	GCNGC	2 cut(s)	19, 250
FokI	GGATG	3 cut(s)	314, 625, 857
Fsp4HI	GCNGC	2 cut(s)	19, 250
FspBI	CTAG	4 cut(s)	11, 903, 990, 1027
GluI	GCNGC	2 cut(s)	19, 250
HaeIII	GGCC	2 cut(s)	356, 994
HapII	CCGG	2 cut(s)	262, 357
HgaI	GACGC	1 cut(s)	779
Hin1I	GRCGYC	1 cut(s)	790
HincII	GTYRAC	1 cut(s)	895
HindII	GTYRAC	1 cut(s)	895
HinfI	GANTC	4 cut(s)	722, 869, 940, 978
HpaII	CCGG	2 cut(s)	262, 357
HphI	GGTGA	2 cut(s)	211, 584
Hpy166II	GTNNAC	2 cut(s)	89, 895
Hpy188I	TCNGA	7 cut(s)	375, 450, 697, 795, 825, 868, 874
Hpy188III	TCNNGA	6 cut(s)	137, 287, 349, 629, 740, 999
Hpy8I	GTNNAC	2 cut(s)	89, 895
HpyAV	CCTTC	7 cut(s)	419, 692, 717, 737, 759, 881, 1005
HpyCH4III	ACNGT	3 cut(s)	86, 391, 1015
HpyCH4V	TGCA	9 cut(s)	75, 182, 249, 495, 519, 635, 730, 928, 950
HpyF3I	CTNAG	7 cut(s)	361, 439, 449, 476, 489, 824, 865
Hsp92I	GRCGYC	1 cut(s)	790
KroI	GCCGGC	1 cut(s)	356
KroNI	GCCGGC	1 cut(s)	358
Ksp22I	TGATCA	2 cut(s)	375, 667
Kzo9I	GATC	5 cut(s)	283, 375, 667, 736, 959
LmnI	GCTCC	2 cut(s)	289, 927
Lsp1109I	GCAGC	2 cut(s)	30, 261
LweI	GCATC	2 cut(s)	622, 644
MaeI	CTAG	4 cut(s)	11, 903, 990, 1027
MaeIII	GTNAC	3 cut(s)	98, 349, 601
MalI	GATC	5 cut(s)	285, 377, 669, 738, 961
MboI	GATC	5 cut(s)	283, 375, 667, 736, 959
MboII	GAAGA	9 cut(s)	144, 152, 203, 288, 473, 476, 851, 967, 987
MhlI	GDGCHC	2 cut(s)	924, 1006
MluCI	AATT	5 cut(s)	145, 183, 547, 690, 759
MlyI	GAGTC	2 cut(s)	878, 949
Mph1103I	ATGCAT	2 cut(s)	521, 637
MroNI	GCCGGC	1 cut(s)	356
MseI	TTAA	2 cut(s)	386, 534
MslI	CAYNNNNRTG	2 cut(s)	94, 197
MspI	CCGG	2 cut(s)	262, 357
MspR9I	CCNGG	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	340
NaeI	GCCGGC	1 cut(s)	358
NcoI	CCATGG	1 cut(s)	777
NdeII	GATC	5 cut(s)	283, 375, 667, 736, 959
NgoMIV	GCCGGC	1 cut(s)	356
NlaIV	GGNNCC	2 cut(s)	312, 705
NmuCI	GTSAC	2 cut(s)	349, 601
NsiI	ATGCAT	2 cut(s)	521, 637
NspI	RCATGY	1 cut(s)	347
OliI	CACNNNNGTG	1 cut(s)	94
PagI	TCATGA	2 cut(s)	628, 739
PceI	AGGCCT	1 cut(s)	994
PdiI	GCCGGC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	722, 978
PkrI	GCNGC	2 cut(s)	20, 251
PleI	GAGTC	2 cut(s)	877, 948
PpsI	GAGTC	2 cut(s)	877, 948
PpuMI	RGGWCCY	2 cut(s)	310, 704
Psp5II	RGGWCCY	2 cut(s)	310, 704
Psp6I	CCWGG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	2 cut(s)	312, 705
PspPI	GGNCC	3 cut(s)	259, 310, 704
PspPPI	RGGWCCY	2 cut(s)	310, 704
PstI	CTGCAG	1 cut(s)	251
RsaI	GTAC	4 cut(s)	83, 245, 401, 1017
RsaNI	GTAC	4 cut(s)	82, 244, 400, 1016
RseI	CAYNNNNRTG	2 cut(s)	94, 197
Rsr2I	CGGWCCG	1 cut(s)	259
RsrII	CGGWCCG	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	386, 534
SatI	GCNGC	2 cut(s)	19, 250
Sau3AI	GATC	5 cut(s)	283, 375, 667, 736, 959
Sau96I	GGNCC	3 cut(s)	259, 310, 704
ScaI	AGTACT	2 cut(s)	245, 1017
SchI	GAGTC	2 cut(s)	878, 949
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	2 cut(s)	924, 1006
SetI	ASST	6 cut(s)	115, 124, 224, 649, 770, 817
SfaNI	GCATC	2 cut(s)	622, 644
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	3 cut(s)	259, 310, 704
SmiMI	CAYNNNNRTG	2 cut(s)	94, 197
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	5 cut(s)	145, 183, 547, 690, 759
SseBI	AGGCCT	1 cut(s)	994
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	4 cut(s)	11, 903, 990, 1027
StuI	AGGCCT	1 cut(s)	994
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	3 cut(s)	86, 391, 1015
TasI	AATT	5 cut(s)	145, 183, 547, 690, 759
TatI	WGTACW	4 cut(s)	81, 243, 399, 1015
TfiI	GAWTC	2 cut(s)	722, 978
Tru1I	TTAA	2 cut(s)	386, 534
Tru9I	TTAA	2 cut(s)	386, 534
TseFI	GTSAC	2 cut(s)	349, 601
TseI	GCWGC	2 cut(s)	18, 249
Tsp45I	GTSAC	2 cut(s)	349, 601
TspDTI	ATGAA	7 cut(s)	59, 138, 348, 756, 852, 875, 968
TspGWI	ACGGA	1 cut(s)	1021
VpaK11BI	GGWCC	3 cut(s)	259, 310, 704
XapI	RAATTY	1 cut(s)	690
XceI	RCATGY	1 cut(s)	347
XspI	CTAG	4 cut(s)	11, 903, 990, 1027
ZrmI	AGTACT	2 cut(s)	245, 1017
Zsp2I	ATGCAT	2 cut(s)	521, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.