Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011832

Physical Location & Seq

Genomic Coordinates Forward (+)

4639129 .. 4641015

Gene Structure 1887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1035800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGGGTCTCAAGGCAGCCATAAGACTTGGATACCATATATGAACACCAAAGATTGTTCCCAAGGCTTTTGTAGTTTGTATTGCCCACAGTGGTGTTACATGGCAGTACCACCCCCACCTGCCTTTGAGTTTCCTCAAGAAGATTCATCATCTCCCATTTTCTCTCCTCTTGTTATTGCAATTATCGGCATTTTGGTCAGTGCTTTTCTTCTTGTGAGCTACTACACCGTAATTTCCAAGTACTGCGGTAACGAGGACCGGAGGAGAGCAAGAAGAGAAAATCATGGCCAGAATGAGGAGTTCGATGACGCTCACACCCAGTCGATCCATATGCCGTGGCATATCACAACGGCTGGCTTAGATGAGGCTTTGATTAAGTCATTAACAGTTTGCAAGTACAAGAAAGGAGATGGATTGGTCGAAGGAACAGATTGTTCGGTTTGTTTGAGTGAGTTTGAAGAAGATGAGAGCCTGAGGTTGTTGCCGAAGTGCAATCATGCTTTCCATCTCCCTTGCATTGATACATGGCTTAAATCTCACTCCAATTGCCCTTTGTGTCGTGCTACCGTAGTTTCTGCAAATGCTTCTCAGTTGCCTCCTAATGCAGTGTCTGAAAGTCCTCCATTAACCGATCGCGATACATTATCATTTGCTGAAAGCCAAGGAGCCTATGAAAATGTGGTAACGGCACAAGATTCAGAGAGGGGTTCTTCTCAAAACGTGGAAGCAATACATGGAGATCATACTATTCCGAAGACATCACTGGGACTTGCTTTTAGTGATTTGGGAAATGCAGAAGGGAGAGATAGCACCATCATTGAGATTGCAGGAGATCATGAGGTATATCATCAAGCAGTTAGAAGGTCGGTTTCCATGGACGGTTCAAGTGGGTACCGTGTTTTAGTTGCAGATATTCTTCGCATGAATGACGAAGATGATGAGGAGGACAATGATATTGATCATGTGGGAGGCTCAGATGACGTTGCCGGTTCTTCGAAACAGTCAGCTGGAGGAGCTGGAAAATCTAGCCATACAAAAGGAGTACTCCTGCATTGTGTTATGAGTCCAGTTGCAATGAGGAGATCATTTTCAAGCGGAAGATTCTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

370

Amino Acids

40.27

Weight (kDa)

5.08

Isoelectric Point (pI)

58.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	144 - 187	1.7e-14	Ring finger domain
zf-RING_11	PF17123	144 - 173	8.7e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	145 - 186	1.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	145 - 186	3.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	147 - 187	1.8e-09	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	152 - 191	2.1e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17905 AT4G17905
fragaria_vesca	FvH4_5g22340
malus_domestica	MD00G1071800.v1.1 MD06G1035800.v1.1
prunus_persica	Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1
pyrus_communis	pycom16g24230
rosa_chinensis	RchiOBHm_Chr7g0210051
rosa_laevigata	RLG00000003068
rosa_multiflora	Rmu_sc0004509.1_g000028
rosa_roxburghii	Rroxscaffold_3G00248650
rosa_rugosa	Rorug07G0118100
rosa_samantha	Rh7BG246500 Rh7CG268700 Rh7DG258800
rosa_wichuraiana	Rw7G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	127
Acc65I	GGTACC	1 cut(s)	891
AccB1I	GGYRCC	1 cut(s)	891
AccII	CGCG	1 cut(s)	636
AciI	CCGC	2 cut(s)	246, 1095
AclWI	GGATC	1 cut(s)	319
AcoI	YGGCCR	1 cut(s)	286
AfaI	GTAC	5 cut(s)	108, 242, 398, 893, 1044
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	3 cut(s)	458, 885, 1092
AleI	CACNNNNGTG	1 cut(s)	91
AluBI	AGCT	3 cut(s)	219, 1007, 1016
AluI	AGCT	3 cut(s)	219, 1007, 1016
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	319
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	15
Asp718I	GGTACC	1 cut(s)	891
AspS9I	GGNCC	1 cut(s)	256
AsuII	TTCGAA	1 cut(s)	995
AvaII	GGWCC	1 cut(s)	256
AxyI	CCTNAGG	1 cut(s)	473
BalI	TGGCCA	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	891
BbsI	GAAGAC	1 cut(s)	761
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	3 cut(s)	404, 513, 821
BceAI	ACGGC	3 cut(s)	319, 366, 702
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BciVI	GTATCC	1 cut(s)	24
BclI	TGATCA	1 cut(s)	958
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	1026
BfuAI	ACCTGC	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	24
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
BmcAI	AGTACT	2 cut(s)	242, 1044
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	2 cut(s)	667, 893
BmrI	ACTGGG	2 cut(s)	313, 773
BmuI	ACTGGG	2 cut(s)	313, 773
BpiI	GAAGAC	1 cut(s)	761
BpmI	CTGGAG	1 cut(s)	1029
Bpu14I	TTCGAA	1 cut(s)	995
BpuEI	CTTGAG	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	957
BsaI	GGTCTC	1 cut(s)	12
BsaJI	CCNNGG	4 cut(s)	61, 335, 661, 873
BsaWI	WCCGGW	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse118I	RCCGGY	1 cut(s)	986
Bse1I	ACTGG	3 cut(s)	319, 768, 1067
Bse21I	CCTNAGG	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	1080
Bse8I	GATNNNNATC	1 cut(s)	957
BseDI	CCNNGG	4 cut(s)	61, 335, 661, 873
BseJI	GATNNNNATC	1 cut(s)	957
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	1080
BseMII	CTCAG	3 cut(s)	464, 602, 987
BseNI	ACTGG	3 cut(s)	319, 768, 1067
BseRI	GAGGAG	6 cut(s)	156, 277, 311, 956, 1026, 1093
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	636
Bsh1285I	CGRYCG	1 cut(s)	634
BshFI	GGCC	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	891
BsiEI	CGRYCG	1 cut(s)	634
BsiSI	CCGG	2 cut(s)	259, 987
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	780
BsnI	GGCC	1 cut(s)	288
Bso31I	GGTCTC	1 cut(s)	12
Bsp119I	TTCGAA	1 cut(s)	995
Bsp143I	GATC	6 cut(s)	324, 631, 739, 832, 958, 1082
Bsp19I	CCATGG	1 cut(s)	873
Bsp68I	TCGCGA	1 cut(s)	636
BspACI	CCGC	2 cut(s)	246, 1095
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	3 cut(s)	465, 601, 986
BspFNI	CGCG	1 cut(s)	636
BspHI	TCATGA	1 cut(s)	835
BspLI	GGNNCC	2 cut(s)	667, 893
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	319
BspT104I	TTCGAA	1 cut(s)	995
BspT107I	GGYRCC	1 cut(s)	891
BspTNI	GGTCTC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	1080
BsrFI	RCCGGY	1 cut(s)	986
BsrI	ACTGG	3 cut(s)	319, 768, 1067
BssAI	RCCGGY	1 cut(s)	986
BssECI	CCNNGG	4 cut(s)	61, 335, 661, 873
BssMI	GATC	6 cut(s)	324, 631, 739, 832, 958, 1082
BssT1I	CCWWGG	3 cut(s)	61, 661, 873
Bst4CI	ACNGT	7 cut(s)	90, 229, 388, 568, 881, 896, 1002
Bst6I	CTCTTC	1 cut(s)	268
BstBI	TTCGAA	1 cut(s)	995
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	4 cut(s)	358, 473, 588, 973
BstDSI	CCRYGG	2 cut(s)	335, 873
BstFNI	CGCG	1 cut(s)	636
BstKTI	GATC	6 cut(s)	327, 634, 742, 835, 961, 1085
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	6 cut(s)	324, 631, 739, 832, 958, 1082
BstMCI	CGRYCG	1 cut(s)	634
BstMWI	GCNNNNNNNGC	1 cut(s)	1013
BstUI	CGCG	1 cut(s)	636
BstV1I	GCAGC	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	761
Bsu36I	CCTNAGG	1 cut(s)	473
BsuI	GTATCC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	288
BtgI	CCRYGG	2 cut(s)	335, 873
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	4 cut(s)	95, 205, 612, 761
BtuMI	TCGCGA	1 cut(s)	636
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	355
CaiI	CAGNNNCTG	1 cut(s)	611
CciI	TCATGA	1 cut(s)	835
Cfr10I	RCCGGY	1 cut(s)	986
Cfr13I	GGNCC	1 cut(s)	256
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	5 cut(s)	107, 241, 397, 892, 1043
CviAII	CATG	9 cut(s)	100, 284, 497, 525, 734, 836, 874, 922, 962
CviQI	GTAC	5 cut(s)	107, 241, 397, 892, 1043
DdeI	CTNAG	4 cut(s)	358, 473, 588, 973
DpnI	GATC	6 cut(s)	326, 633, 741, 834, 960, 1084
DpnII	GATC	6 cut(s)	324, 631, 739, 832, 958, 1082
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco130I	CCWWGG	3 cut(s)	61, 661, 873
Eco31I	GGTCTC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	256
Eco81I	CCTNAGG	1 cut(s)	473
EcoT14I	CCWWGG	3 cut(s)	61, 661, 873
ErhI	CCWWGG	3 cut(s)	61, 661, 873
FaeI	CATG	9 cut(s)	103, 287, 500, 528, 737, 839, 877, 925, 965
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	9 cut(s)	99, 283, 496, 524, 733, 835, 873, 921, 961
FauNDI	CATATG	1 cut(s)	330
FbaI	TGATCA	1 cut(s)	958
Fnu4HI	GCNGC	1 cut(s)	16
Fsp4HI	GCNGC	1 cut(s)	16
FspBI	CTAG	1 cut(s)	1026
GluI	GCNGC	1 cut(s)	16
GsuI	CTGGAG	1 cut(s)	1029
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	2 cut(s)	259, 987
HgaI	GACGC	1 cut(s)	317
Hin1II	CATG	9 cut(s)	103, 287, 500, 528, 737, 839, 877, 925, 965
HinfI	GANTC	4 cut(s)	143, 695, 1063, 1101
HpaII	CCGG	2 cut(s)	259, 987
Hpy188I	TCNGA	4 cut(s)	613, 700, 753, 976
Hpy188III	TCNNGA	3 cut(s)	137, 635, 836
HpyAV	CCTTC	3 cut(s)	416, 791, 855
HpyCH4III	ACNGT	7 cut(s)	90, 229, 388, 568, 881, 896, 1002
HpyCH4IV	ACGT	2 cut(s)	720, 981
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1013
HpyF3I	CTNAG	4 cut(s)	358, 473, 588, 973
HpySE526I	ACGT	2 cut(s)	720, 981
Hsp92II	CATG	9 cut(s)	103, 287, 500, 528, 737, 839, 877, 925, 965
KpnI	GGTACC	1 cut(s)	895
Ksp22I	TGATCA	1 cut(s)	958
Kzo9I	GATC	6 cut(s)	324, 631, 739, 832, 958, 1082
LmnI	GCTCC	2 cut(s)	665, 1013
Lsp1109I	GCAGC	1 cut(s)	27
MaeI	CTAG	1 cut(s)	1026
MaeII	ACGT	2 cut(s)	720, 981
MaeIII	GTNAC	3 cut(s)	95, 248, 682
MalI	GATC	6 cut(s)	326, 633, 741, 834, 960, 1084
MboI	GATC	6 cut(s)	324, 631, 739, 832, 958, 1082
MfeI	CAATTG	1 cut(s)	544
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	3 cut(s)	180, 231, 544
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	1072
Mox20I	TGGCCA	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	5 cut(s)	375, 383, 531, 626, 1108
MslI	CAYNNNNRTG	1 cut(s)	91
Msp20I	TGGCCA	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	1007
MspI	CCGG	2 cut(s)	259, 987
MunI	CAATTG	1 cut(s)	544
MvnI	CGCG	1 cut(s)	636
MwoI	GCNNNNNNNGC	1 cut(s)	1013
NcoI	CCATGG	1 cut(s)	873
NdeI	CATATG	1 cut(s)	330
NdeII	GATC	6 cut(s)	324, 631, 739, 832, 958, 1082
NlaIII	CATG	9 cut(s)	103, 287, 500, 528, 737, 839, 877, 925, 965
NlaIV	GGNNCC	2 cut(s)	667, 893
NruI	TCGCGA	1 cut(s)	636
NspV	TTCGAA	1 cut(s)	995
OliI	CACNNNNGTG	1 cut(s)	91
PagI	TCATGA	1 cut(s)	835
PaqCI	CACCTGC	1 cut(s)	127
PfeI	GAWTC	3 cut(s)	143, 695, 1101
PkrI	GCNGC	1 cut(s)	17
Ple19I	CGATCG	1 cut(s)	634
PleI	GAGTC	1 cut(s)	1071
PpsI	GAGTC	1 cut(s)	1071
PspN4I	GGNNCC	2 cut(s)	667, 893
PspPI	GGNCC	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	611
PvuI	CGATCG	1 cut(s)	634
PvuII	CAGCTG	1 cut(s)	1007
RruI	TCGCGA	1 cut(s)	636
RsaI	GTAC	5 cut(s)	108, 242, 398, 893, 1044
RsaNI	GTAC	5 cut(s)	107, 241, 397, 892, 1043
RseI	CAYNNNNRTG	1 cut(s)	91
SaqAI	TTAA	5 cut(s)	375, 383, 531, 626, 1108
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	6 cut(s)	324, 631, 739, 832, 958, 1082
Sau96I	GGNCC	1 cut(s)	256
ScaI	AGTACT	2 cut(s)	242, 1044
SchI	GAGTC	1 cut(s)	1072
SetI	ASST	9 cut(s)	121, 221, 479, 723, 843, 866, 984, 1009, 1018
SfuI	TTCGAA	1 cut(s)	995
SinI	GGWCC	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	9, 135
SmoI	CTYRAG	2 cut(s)	9, 135
Sse9I	AATT	3 cut(s)	180, 231, 544
SsiI	CCGC	2 cut(s)	246, 1095
SspMI	CTAG	1 cut(s)	1026
StyI	CCWWGG	3 cut(s)	61, 661, 873
TaaI	ACNGT	7 cut(s)	90, 229, 388, 568, 881, 896, 1002
TaiI	ACGT	2 cut(s)	723, 984
TaqI	TCGA	4 cut(s)	303, 323, 420, 995
TasI	AATT	3 cut(s)	180, 231, 544
TatI	WGTACW	3 cut(s)	240, 396, 1042
TfiI	GAWTC	3 cut(s)	143, 695, 1101
Tru1I	TTAA	5 cut(s)	375, 383, 531, 626, 1108
Tru9I	TTAA	5 cut(s)	375, 383, 531, 626, 1108
TscAI	CASTG	4 cut(s)	95, 205, 612, 768
TseI	GCWGC	1 cut(s)	15
TspDTI	ATGAA	4 cut(s)	56, 135, 687, 938
TspRI	CASTG	4 cut(s)	95, 205, 612, 768
VpaK11BI	GGWCC	1 cut(s)	256
XspI	CTAG	1 cut(s)	1026
ZrmI	AGTACT	2 cut(s)	242, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.