Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011832

Physical Location & Seq

Genomic Coordinates Forward (+)

13723911 .. 13724771

Gene Structure 861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTCCAAGTACTGTGGTAACGAGGACCGAAGAAGATCAAGAATCAGGGAAGATCATGGCCACAATGAGGAGTTGGAAGGTACCCAAAATCCTTCTATTCATGAACCGTGGTATGTGGTGACTGTTGGCTTGGATGAAGCTCTGATCAAGTCCTTGAGAGTTTGTAAGTACAAGAATGGAGATGTCTTGGTTGAAGGGACGGATTGCGCAGTCTGTCTCAGTGAGTTTGAAGAAGATGAGAGCCTGAGGCTGTTGCCTAAGTGCAACCATGCTTTTCATCTACCATGTATTGATACATGGCTCAAATCTCACTCAAATTGCCCCCTATGTCGTGCCAGTGTTGTTTCGACGAATGCTCCAACACATCATCAAGTGCCTCCTTCTGTGACTGAACCTCCTTCAAGTACTAGCAATGAAGAAGTAATCATGAGGGCACAAGTTTCAGAGAGCGATCATTCTCAAAATGTGGAGATAGTGCATGGAGATGTCATTCCAAAGACACCATTACGTGTTTTTAGTGATTTGGGGAATTCAGAAGAGAGGGATACCGTAATAGAGATCGGAGGTGATGATGCAGTTCATCAAACAGTTAGAAGGTCAGCTTCGATGGACTATTTGTGTCACAATAACCGCATTTCAGTAGCCGATATTCTTCGCATAAATGACGAAGAAGATAAACATCTGGAAGGTTGGTCAGATGATATTGCTGGTTCTTCAAAACAATCAGTAGCTGGAGGAGCTGGAACTCATAGCCTCACTAAAGAGCCTATGAGACATGTTGCAATGAAGAGATCATTTTCGGGTGGGAGATTGTTTCTCACTAGGCCTGCAAGAGCAAGGCATACACCAATTCCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

287

Amino Acids

31.84

Weight (kDa)

5.79

Isoelectric Point (pI)

54.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	68 - 111	1e-14	Ring finger domain
zf-RING_11	PF17123	68 - 97	8.3e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	69 - 110	7.3e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	69 - 110	2.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	72 - 111	3.1e-09	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	75 - 114	1.8e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17905 AT4G17905
fragaria_vesca	FvH4_5g22340
malus_domestica	MD00G1071800.v1.1 MD06G1035800.v1.1
prunus_persica	Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1
pyrus_communis	pycom16g24230
rosa_chinensis	RchiOBHm_Chr7g0210051
rosa_laevigata	RLG00000003068
rosa_multiflora	Rmu_sc0004509.1_g000028
rosa_roxburghii	Rroxscaffold_3G00248650
rosa_rugosa	Rorug07G0118100
rosa_samantha	Rh7BG246500 Rh7CG268700 Rh7DG258800
rosa_wichuraiana	Rw7G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	208
Acc65I	GGTACC	1 cut(s)	80
AccB1I	GGYRCC	1 cut(s)	80
AciI	CCGC	1 cut(s)	631
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	529
AfaI	GTAC	4 cut(s)	11, 82, 170, 406
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	2 cut(s)	508, 775
AgsI	TTSAA	4 cut(s)	194, 230, 402, 717
AluBI	AGCT	4 cut(s)	140, 602, 731, 740
AluI	AGCT	4 cut(s)	140, 602, 731, 740
Alw26I	GTCTC	2 cut(s)	221, 766
AlwNI	CAGNNNCTG	1 cut(s)	731
AoxI	GGCC	2 cut(s)	58, 824
ApoI	RAATTY	1 cut(s)	529
Asp718I	GGTACC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	2 cut(s)	130, 578
AvaII	GGWCC	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	80
BccI	CCATC	1 cut(s)	601
BciVI	GTATCC	1 cut(s)	538
BclI	TGATCA	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	221, 766
BfaI	CTAG	3 cut(s)	408, 822, 859
BfuI	GTATCC	1 cut(s)	538
BmcAI	AGTACT	2 cut(s)	11, 406
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	82
BmsI	GCATC	1 cut(s)	562
BpmI	CTGGAG	1 cut(s)	753
BpuEI	CTTGAG	1 cut(s)	175
BsaAI	YACGTR	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	678
BsaJI	CCNNGG	1 cut(s)	107
BsaXI	ACNNNNNCTCC	4 cut(s)	340, 370, 379, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	336
Bse21I	CCTNAGG	1 cut(s)	245
Bse3DI	GCAATG	2 cut(s)	418, 789
Bse8I	GATNNNNATC	1 cut(s)	678
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	678
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	2 cut(s)	418, 789
BseMII	CTCAG	2 cut(s)	232, 236
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	2 cut(s)	83, 750
BseSI	GKGCMC	1 cut(s)	436
BshFI	GGCC	2 cut(s)	60, 826
BshNI	GGYRCC	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	2 cut(s)	221, 766
BsmFI	GGGAC	1 cut(s)	211
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	60, 826
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp143I	GATC	6 cut(s)	35, 52, 144, 451, 558, 791
BspACI	CCGC	1 cut(s)	631
BspANI	GGCC	2 cut(s)	60, 826
BspCNI	CTCAG	2 cut(s)	231, 237
BspHI	TCATGA	2 cut(s)	100, 426
BspLI	GGNNCC	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	418, 789
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	6 cut(s)	35, 52, 144, 451, 558, 791
Bst4CI	ACNGT	5 cut(s)	14, 108, 124, 550, 589
Bst6I	CTCTTC	2 cut(s)	531, 782
BstBAI	YACGTR	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	828
BstDEI	CTNAG	3 cut(s)	218, 245, 258
BstDSI	CCRYGG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	6 cut(s)	38, 55, 147, 454, 561, 794
BstMAI	GTCTC	2 cut(s)	221, 766
BstMBI	GATC	6 cut(s)	35, 52, 144, 451, 558, 791
BstMWI	GCNNNNNNNGC	1 cut(s)	737
BstNSI	RCATGY	1 cut(s)	779
BstSLI	GKGCMC	1 cut(s)	436
Bsu36I	CCTNAGG	1 cut(s)	245
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	60, 826
BtgI	CCRYGG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	226, 343
Cac8I	GCNNGC	1 cut(s)	828
CaiI	CAGNNNCTG	1 cut(s)	731
CciI	TCATGA	2 cut(s)	100, 426
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	25
Csp6I	GTAC	4 cut(s)	10, 81, 169, 405
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviAII	CATG	8 cut(s)	56, 101, 269, 285, 297, 427, 479, 776
CviQI	GTAC	4 cut(s)	10, 81, 169, 405
DdeI	CTNAG	3 cut(s)	218, 245, 258
DpnI	GATC	6 cut(s)	37, 54, 146, 453, 560, 793
DpnII	GATC	6 cut(s)	35, 52, 144, 451, 558, 791
EaeI	YGGCCR	1 cut(s)	58
Eam1104I	CTCTTC	2 cut(s)	531, 782
EarI	CTCTTC	2 cut(s)	531, 782
Eco147I	AGGCCT	1 cut(s)	826
Eco47I	GGWCC	1 cut(s)	25
Eco81I	CCTNAGG	1 cut(s)	245
EcoRI	GAATTC	1 cut(s)	529
FaeI	CATG	8 cut(s)	59, 104, 272, 288, 300, 430, 482, 779
FalI	AAGNNNNNCTT	2 cut(s)	586, 618
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	8 cut(s)	55, 100, 268, 284, 296, 426, 478, 775
FbaI	TGATCA	1 cut(s)	144
FokI	GGATG	1 cut(s)	146
FspBI	CTAG	3 cut(s)	408, 822, 859
FspI	TGCGCA	1 cut(s)	208
GlaI	GCGC	1 cut(s)	208
GsuI	CTGGAG	1 cut(s)	753
HaeIII	GGCC	2 cut(s)	60, 826
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	8 cut(s)	59, 104, 272, 288, 300, 430, 482, 779
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HinfI	GANTC	1 cut(s)	42
HphI	GGTGA	2 cut(s)	130, 578
Hpy188I	TCNGA	5 cut(s)	144, 445, 535, 563, 697
Hpy188III	TCNNGA	4 cut(s)	39, 101, 427, 683
Hpy99I	CGWCG	1 cut(s)	352
HpyAV	CCTTC	7 cut(s)	71, 102, 188, 390, 408, 588, 680
HpyCH4III	ACNGT	5 cut(s)	14, 108, 124, 550, 589
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	5 cut(s)	264, 478, 575, 782, 830
HpyF10VI	GCNNNNNNNGC	1 cut(s)	737
HpyF3I	CTNAG	3 cut(s)	218, 245, 258
HpySE526I	ACGT	1 cut(s)	508
Hsp92II	CATG	8 cut(s)	59, 104, 272, 288, 300, 430, 482, 779
HspAI	GCGC	1 cut(s)	207
KpnI	GGTACC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	6 cut(s)	35, 52, 144, 451, 558, 791
LmnI	GCTCC	2 cut(s)	361, 737
LpnPI	CCDG	8 cut(s)	31, 257, 349, 668, 693, 717, 726, 840
LweI	GCATC	1 cut(s)	562
MaeI	CTAG	3 cut(s)	408, 822, 859
MaeII	ACGT	1 cut(s)	508
MaeIII	GTNAC	4 cut(s)	17, 118, 385, 620
MalI	GATC	6 cut(s)	37, 54, 146, 453, 560, 793
MboI	GATC	6 cut(s)	35, 52, 144, 451, 558, 791
MhlI	GDGCHC	1 cut(s)	436
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	3 cut(s)	316, 529, 849
MluNI	TGGCCA	1 cut(s)	60
MmeI	TCCRAC	2 cut(s)	54, 383
Mox20I	TGGCCA	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	483
Msp20I	TGGCCA	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	737
NdeII	GATC	6 cut(s)	35, 52, 144, 451, 558, 791
NlaIII	CATG	8 cut(s)	59, 104, 272, 288, 300, 430, 482, 779
NlaIV	GGNNCC	1 cut(s)	82
NmuCI	GTSAC	3 cut(s)	118, 385, 620
NsbI	TGCGCA	1 cut(s)	208
NspI	RCATGY	1 cut(s)	779
PagI	TCATGA	2 cut(s)	100, 426
PceI	AGGCCT	1 cut(s)	826
PciI	ACATGT	1 cut(s)	775
PctI	GAATGC	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	42
Ppu21I	YACGTR	1 cut(s)	509
PscI	ACATGT	1 cut(s)	775
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	731
RsaI	GTAC	4 cut(s)	11, 82, 170, 406
RsaNI	GTAC	4 cut(s)	10, 81, 169, 405
RseI	CAYNNNNRTG	1 cut(s)	483
Sau3AI	GATC	6 cut(s)	35, 52, 144, 451, 558, 791
Sau96I	GGNCC	1 cut(s)	25
ScaI	AGTACT	2 cut(s)	11, 406
SduI	GDGCHC	1 cut(s)	436
SfaNI	GCATC	1 cut(s)	562
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	3 cut(s)	316, 529, 849
SseBI	AGGCCT	1 cut(s)	826
SsiI	CCGC	1 cut(s)	631
SspMI	CTAG	3 cut(s)	408, 822, 859
StuI	AGGCCT	1 cut(s)	826
TaaI	ACNGT	5 cut(s)	14, 108, 124, 550, 589
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	2 cut(s)	347, 605
TaqII	GACCGA	1 cut(s)	42
TasI	AATT	3 cut(s)	316, 529, 849
TatI	WGTACW	3 cut(s)	9, 168, 404
TfiI	GAWTC	1 cut(s)	42
TscAI	CASTG	2 cut(s)	226, 343
TseFI	GTSAC	3 cut(s)	118, 385, 620
Tsp45I	GTSAC	3 cut(s)	118, 385, 620
TspDTI	ATGAA	7 cut(s)	89, 117, 150, 266, 429, 569, 800
TspGWI	ACGGA	1 cut(s)	215
TspRI	CASTG	2 cut(s)	226, 343
VpaK11BI	GGWCC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	529
XceI	RCATGY	1 cut(s)	779
XspI	CTAG	3 cut(s)	408, 822, 859
ZrmI	AGTACT	2 cut(s)	11, 406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.