Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004509.1

Orthogroup ID

OG0011832

Physical Location & Seq

Genomic Coordinates Forward (+)

96989 .. 98062

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004509.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

atgaacagcagagactgttctaaaggcttttgtagtttgtactgtccacaatggtgctacatcgtaataccaccccctccttcctttgagtttcctcaggacaattcatcttcatctccaaatttctctcctcttgttattgcaatcattggcattttggtgagtgcctttcttcttgtgagctactacaccataatgtccaagtactgcggtaacgaggaccgaagaagatcaacaagcagagaagactatagccagaatgaggagctggatggtacccaaaatccttctatccatgaaccgtggtatgttgtgactgtcggcttggatgaaggtgtgataaagtcattgggagtttataggtacaagaatggagatggcttagttgaagggacggattgcgctgtctgtctgagtgagtttgaagaagatgagagcctgaggctgttgcccaagtgcaaccatgcttttcatcttccatgtattgatacatggctcaagtctcactcgaattgccctctatgtcgtgctagcgtggtttcgacgaatgctccaacacatcaattgcctcctgttgtgactgaaactcctccaagtagtagcaatgaagatgaaaatgtaatcatgggggcacaagtttcagagatgggtcatcctcaaaatgtggagatattgcatggagatgtcattccaaagacaccagtacgcgcttttagtgatttgggtaattcagaagagagggataccataatagagattgaatgtgatgatacatttgatcaaacagtcagaaggtcagtctccatggactatttatgtcagaataatcgcattttagttgccgatattctccgcacgaatgatgaagaagatgaagaacatgtgcaagggtgctcacagttagagtcagatgagattgctggtccttcaaaacaatcagtagctggaggagttgtaactcataaccgcagaaaagagactctgaggcatgttgcaatgaagagatcattttcgggtgggagattgtttctaactaggcctgcaagagccaggcatatagtaattccactctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

357

Amino Acids

39.84

Weight (kDa)

5.02

Isoelectric Point (pI)

60.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17905 AT4G17905
fragaria_vesca	FvH4_5g22340
malus_domestica	MD00G1071800.v1.1 MD06G1035800.v1.1
prunus_persica	Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1
pyrus_communis	pycom16g24230
rosa_chinensis	RchiOBHm_Chr7g0210051
rosa_laevigata	RLG00000003068
rosa_multiflora	Rmu_sc0004509.1_g000028
rosa_roxburghii	Rroxscaffold_3G00248650
rosa_rugosa	Rorug07G0118100
rosa_samantha	Rh7BG246500 Rh7CG268700 Rh7DG258800
rosa_wichuraiana	Rw7G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	1 cut(s)	275
AccII	CGCG	1 cut(s)	708
AciI	CCGC	3 cut(s)	210, 853, 967
AcsI	RAATTY	1 cut(s)	121
AfaI	GTAC	5 cut(s)	41, 206, 277, 365, 705
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflIII	ACRYGT	1 cut(s)	880
AgsI	TTSAA	4 cut(s)	389, 425, 761, 930
AjnI	CCWGG	1 cut(s)	1049
AleI	CACNNNNGTG	1 cut(s)	52
AluBI	AGCT	3 cut(s)	183, 268, 944
AluI	AGCT	3 cut(s)	183, 268, 944
Alw21I	GWGCWC	1 cut(s)	896
Alw26I	GTCTC	4 cut(s)	6, 507, 805, 971
AlwNI	CAGNNNCTG	2 cut(s)	15, 944
AoxI	GGCC	1 cut(s)	1037
ApoI	RAATTY	1 cut(s)	121
Asp718I	GGTACC	1 cut(s)	275
AspLEI	GCGC	2 cut(s)	404, 710
AspS9I	GGNCC	2 cut(s)	220, 923
AsuHPI	GGTGA	1 cut(s)	172
AsuNHI	GCTAGC	1 cut(s)	530
AvaII	GGWCC	2 cut(s)	220, 923
AxyI	CCTNAGG	2 cut(s)	96, 440
BaeGI	GKGCMC	1 cut(s)	634
BanI	GGYRCC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	1 cut(s)	896
BccI	CCATC	3 cut(s)	266, 371, 640
BciT130I	CCWGG	1 cut(s)	1051
BciVI	GTATCC	1 cut(s)	736
BclI	TGATCA	1 cut(s)	778
BcoDI	GTCTC	4 cut(s)	6, 507, 805, 971
BfaI	CTAG	3 cut(s)	531, 1035, 1072
BfmI	CTRYAG	1 cut(s)	250
BfuI	GTATCC	1 cut(s)	736
BmcAI	AGTACT	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	1051
Bme18I	GGWCC	2 cut(s)	220, 923
BmgT120I	GGNCC	2 cut(s)	220, 923
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	1051
BmtI	GCTAGC	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	966
BpuEI	CTTGAG	1 cut(s)	482
BsaJI	CCNNGG	2 cut(s)	302, 804
BsaXI	ACNNNNNCTCC	6 cut(s)	535, 565, 571, 601, 939, 969
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	701
Bse21I	CCTNAGG	2 cut(s)	96, 440
Bse3DI	GCAATG	2 cut(s)	610, 1002
BseBI	CCWGG	1 cut(s)	1051
BseDI	CCNNGG	2 cut(s)	302, 804
BseGI	GGATG	3 cut(s)	277, 334, 652
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMI	GCAATG	2 cut(s)	610, 1002
BseMII	CTCAG	4 cut(s)	110, 404, 431, 974
BseNI	ACTGG	1 cut(s)	701
BseRI	GAGGAG	4 cut(s)	120, 278, 579, 963
BseSI	GKGCMC	1 cut(s)	634
Bsh1236I	CGCG	1 cut(s)	708
BshFI	GGCC	1 cut(s)	1039
BshNI	GGYRCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	896
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	4 cut(s)	6, 507, 805, 971
BsmFI	GGGAC	1 cut(s)	406
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	1 cut(s)	1039
Bsp1286I	GDGCHC	2 cut(s)	634, 896
Bsp143I	GATC	3 cut(s)	230, 778, 1004
Bsp19I	CCATGG	1 cut(s)	804
BspACI	CCGC	3 cut(s)	210, 853, 967
BspANI	GGCC	1 cut(s)	1039
BspCNI	CTCAG	4 cut(s)	109, 405, 432, 975
BspFNI	CGCG	1 cut(s)	708
BspLI	GGNNCC	1 cut(s)	277
BspOI	GCTAGC	1 cut(s)	534
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	2 cut(s)	610, 1002
BsrI	ACTGG	1 cut(s)	701
BssECI	CCNNGG	2 cut(s)	302, 804
BssMI	GATC	3 cut(s)	230, 778, 1004
BssT1I	CCWWGG	1 cut(s)	804
Bst2UI	CCWGG	1 cut(s)	1051
Bst4CI	ACNGT	6 cut(s)	17, 44, 303, 319, 787, 900
Bst6I	CTCTTC	2 cut(s)	729, 995
BstC8I	GCNNGC	2 cut(s)	532, 1041
BstDEI	CTNAG	5 cut(s)	96, 382, 413, 440, 983
BstDSI	CCRYGG	2 cut(s)	302, 804
BstF5I	GGATG	3 cut(s)	277, 334, 652
BstFNI	CGCG	1 cut(s)	708
BstHHI	GCGC	2 cut(s)	404, 710
BstKTI	GATC	3 cut(s)	233, 781, 1007
BstMAI	GTCTC	4 cut(s)	6, 507, 805, 971
BstMBI	GATC	3 cut(s)	230, 778, 1004
BstNI	CCWGG	1 cut(s)	1051
BstNSI	RCATGY	2 cut(s)	884, 992
BstSCI	CCNGG	1 cut(s)	1049
BstSFI	CTRYAG	1 cut(s)	250
BstSLI	GKGCMC	1 cut(s)	634
BstUI	CGCG	1 cut(s)	708
BstV2I	GAAGAC	1 cut(s)	252
Bsu36I	CCTNAGG	2 cut(s)	96, 440
BsuI	GTATCC	1 cut(s)	736
BsuRI	GGCC	1 cut(s)	1039
BtgI	CCRYGG	2 cut(s)	302, 804
BtsCI	GGATG	3 cut(s)	277, 334, 652
Cac8I	GCNNGC	2 cut(s)	532, 1041
CaiI	CAGNNNCTG	2 cut(s)	15, 944
CfoI	GCGC	2 cut(s)	404, 710
Cfr13I	GGNCC	2 cut(s)	220, 923
Csp6I	GTAC	5 cut(s)	40, 205, 276, 364, 704
CviAII	CATG	9 cut(s)	296, 464, 480, 492, 625, 677, 805, 881, 989
CviQI	GTAC	5 cut(s)	40, 205, 276, 364, 704
DdeI	CTNAG	5 cut(s)	96, 382, 413, 440, 983
DpnI	GATC	3 cut(s)	232, 780, 1006
DpnII	GATC	3 cut(s)	230, 778, 1004
Eam1104I	CTCTTC	2 cut(s)	729, 995
EarI	CTCTTC	2 cut(s)	729, 995
Eco130I	CCWWGG	1 cut(s)	804
Eco147I	AGGCCT	1 cut(s)	1039
Eco47I	GGWCC	2 cut(s)	220, 923
Eco81I	CCTNAGG	2 cut(s)	96, 440
EcoRII	CCWGG	1 cut(s)	1049
EcoT14I	CCWWGG	1 cut(s)	804
ErhI	CCWWGG	1 cut(s)	804
FaeI	CATG	9 cut(s)	299, 467, 483, 495, 628, 680, 808, 884, 992
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	9 cut(s)	295, 463, 479, 491, 624, 676, 804, 880, 988
FbaI	TGATCA	1 cut(s)	778
FokI	GGATG	3 cut(s)	284, 341, 639
FspBI	CTAG	3 cut(s)	531, 1035, 1072
GlaI	GCGC	2 cut(s)	403, 709
GsuI	CTGGAG	1 cut(s)	966
HaeIII	GGCC	1 cut(s)	1039
HhaI	GCGC	2 cut(s)	404, 710
Hin1II	CATG	9 cut(s)	299, 467, 483, 495, 628, 680, 808, 884, 992
Hin6I	GCGC	2 cut(s)	402, 708
HinP1I	GCGC	2 cut(s)	402, 708
HinfI	GANTC	2 cut(s)	905, 979
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	7 cut(s)	414, 643, 733, 791, 822, 910, 984
Hpy188III	TCNNGA	1 cut(s)	98
Hpy8I	GTNNAC	1 cut(s)	47
Hpy99I	CGWCG	1 cut(s)	547
HpyAV	CCTTC	6 cut(s)	90, 297, 326, 383, 786, 936
HpyCH4III	ACNGT	6 cut(s)	17, 44, 303, 319, 787, 900
HpyCH4V	TGCA	6 cut(s)	143, 459, 676, 886, 995, 1043
HpyF3I	CTNAG	5 cut(s)	96, 382, 413, 440, 983
Hsp92II	CATG	9 cut(s)	299, 467, 483, 495, 628, 680, 808, 884, 992
HspAI	GCGC	2 cut(s)	402, 708
KpnI	GGTACC	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	3 cut(s)	230, 778, 1004
LmnI	GCTCC	2 cut(s)	265, 556
MaeI	CTAG	3 cut(s)	531, 1035, 1072
MaeIII	GTNAC	4 cut(s)	212, 313, 577, 955
MalI	GATC	3 cut(s)	232, 780, 1006
MboI	GATC	3 cut(s)	230, 778, 1004
MfeI	CAATTG	1 cut(s)	563
MhlI	GDGCHC	2 cut(s)	634, 896
MluCI	AATT	6 cut(s)	103, 121, 511, 563, 727, 1062
MlyI	GAGTC	2 cut(s)	914, 973
MmeI	TCCRAC	1 cut(s)	578
MslI	CAYNNNNRTG	4 cut(s)	52, 158, 194, 681
MspR9I	CCNGG	1 cut(s)	1051
MunI	CAATTG	1 cut(s)	563
Mva1269I	GAATGC	1 cut(s)	553
MvaI	CCWGG	1 cut(s)	1051
MvnI	CGCG	1 cut(s)	708
NcoI	CCATGG	1 cut(s)	804
NdeII	GATC	3 cut(s)	230, 778, 1004
NheI	GCTAGC	1 cut(s)	530
NlaIII	CATG	9 cut(s)	299, 467, 483, 495, 628, 680, 808, 884, 992
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	2 cut(s)	313, 577
NspI	RCATGY	2 cut(s)	884, 992
OliI	CACNNNNGTG	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	1039
PciI	ACATGT	1 cut(s)	880
PctI	GAATGC	1 cut(s)	553
PleI	GAGTC	2 cut(s)	913, 973
PpsI	GAGTC	2 cut(s)	913, 973
PscI	ACATGT	1 cut(s)	880
Psp6I	CCWGG	1 cut(s)	1049
PspGI	CCWGG	1 cut(s)	1049
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	220, 923
PstNI	CAGNNNCTG	2 cut(s)	15, 944
RsaI	GTAC	5 cut(s)	41, 206, 277, 365, 705
RsaNI	GTAC	5 cut(s)	40, 205, 276, 364, 704
RseI	CAYNNNNRTG	4 cut(s)	52, 158, 194, 681
Sau3AI	GATC	3 cut(s)	230, 778, 1004
Sau96I	GGNCC	2 cut(s)	220, 923
ScaI	AGTACT	1 cut(s)	206
SchI	GAGTC	2 cut(s)	914, 973
ScrFI	CCNGG	1 cut(s)	1051
SduI	GDGCHC	2 cut(s)	634, 896
SetI	ASST	6 cut(s)	185, 270, 337, 365, 797, 946
SfcI	CTRYAG	1 cut(s)	250
SinI	GGWCC	2 cut(s)	220, 923
SmiMI	CAYNNNNRTG	4 cut(s)	52, 158, 194, 681
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
Sse9I	AATT	6 cut(s)	103, 121, 511, 563, 727, 1062
SseBI	AGGCCT	1 cut(s)	1039
SsiI	CCGC	3 cut(s)	210, 853, 967
SspMI	CTAG	3 cut(s)	531, 1035, 1072
StuI	AGGCCT	1 cut(s)	1039
StyD4I	CCNGG	1 cut(s)	1049
StyI	CCWWGG	1 cut(s)	804
TaaI	ACNGT	6 cut(s)	17, 44, 303, 319, 787, 900
TaqI	TCGA	2 cut(s)	509, 542
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	6 cut(s)	103, 121, 511, 563, 727, 1062
TatI	WGTACW	2 cut(s)	39, 204
TseFI	GTSAC	2 cut(s)	313, 577
Tsp45I	GTSAC	2 cut(s)	313, 577
TspGWI	ACGGA	1 cut(s)	410
VpaK11BI	GGWCC	2 cut(s)	220, 923
XapI	RAATTY	1 cut(s)	121
XceI	RCATGY	2 cut(s)	884, 992
XspI	CTAG	3 cut(s)	531, 1035, 1072
ZrmI	AGTACT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.