Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011832

Physical Location & Seq

Genomic Coordinates Reverse (-)

25498873 .. 25500039

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g24230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGGGTCTCAAGGCAGCCCTAAAACTTGGATACCATATATGAACACAAAAGATTGTTCTCAAGGCTTTTGTAGTTTGTATTGCCCACAGTGGTGTTACATCACAATACCACCCCCACCTGCCCTTGAGTTTCCTCGAGATGATTCATCATCATCGTCTCCAAATTTCTCTCCTCTTGTTATTGCAATTATTGGCATTTTGGTCAGTGCCTTTCTTCTTGTGAGCTACTACGCTGTAATCTCCAAGTACTGTGGCAACGAGGACCAGAGGAGAGCAAGAAGAGAAAGTCATGGCCTGAATGAGGAGCTCGATGACACTTACAACCCGGCGATCCATGAGCCGTGGCATGTAGCAACGGCTGGCTTAGATGAGGCTTTGATCAAGTCATTAACAGTTTGTAAGTACGAGAAGGGAGATGGATTGGTTGAAGGAACAGATTGTTCGGTTTGTTTGAGTGAGTTTGAAGAAGATGAGAGCCTGAGGCTGTTGCCTAAATGCAATCATGCTTTCCATCTCCCTTGCATTGATACATGGCTTAAATCTCACTCCAATTGCCCTTTGTGTCGCGCTAACGTAGTTTCTGTTTCTGCAAATGCTTTTCAATTGCCTCCCAATGCAGTATCTGAAAGTCCTCGATTAACCGATCACGATACATCATCATTTGCTGAAAGCCAAGGAGCAAATGAAAATGCGGTAACGGCACAAGATTCAGAAAGGGGTTCTTCTCAAAACGTGGACGTAATTCATGGAGATCAAGTTATTCCGAAGACATCATCGGTACGGGCTTTTAGTGATTTGGGAAATGCAGAAGGGAGAGAGAGTACCATCATTGAGATTGGAGGAGACCATGAGGAATATCATCAAGTAGTTAGAAGGTCGGTTTCCATGGACGATTCACGTGGGAACCGTGTTTTAGTCGCAGATATTATTGGCATGAATGAGGAGTACGATGAAGAGGACAATGATATAGATCATGTGGGAGGCTCAGATGATGTTGCTGGTCCTTCGAAACGGTCTGCTGGAGGAGCTGGAAAATCTAGCCATACAAAAGGAGTACTCCTACATTGTGTTATGAGTCCAGTTGCAATGAAGAGATCATTTTCAAGCGGAAGATTCTTTCAAATCAAGCCTTCAAGAGCAGGGCATACAGTAATTCCTCCAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

389

Amino Acids

42.25

Weight (kDa)

5.06

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	146 - 189	1.8e-14	Ring finger domain
zf-RING_11	PF17123	146 - 175	9.3e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	147 - 188	1.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	147 - 188	3.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	149 - 189	1.9e-09	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	154 - 192	4.9e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17905 AT4G17905
fragaria_vesca	FvH4_5g22340
malus_domestica	MD00G1071800.v1.1 MD06G1035800.v1.1
prunus_persica	Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1
pyrus_communis	pycom16g24230
rosa_chinensis	RchiOBHm_Chr7g0210051
rosa_laevigata	RLG00000003068
rosa_multiflora	Rmu_sc0004509.1_g000028
rosa_roxburghii	Rroxscaffold_3G00248650
rosa_rugosa	Rorug07G0118100
rosa_samantha	Rh7BG246500 Rh7CG268700 Rh7DG258800
rosa_wichuraiana	Rw7G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	127
AccII	CGCG	1 cut(s)	567
AciI	CCGC	2 cut(s)	692, 1107
AclWI	GGATC	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	163
AcvI	CACGTG	1 cut(s)	899
AfaI	GTAC	6 cut(s)	248, 404, 780, 823, 947, 1056
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	6 cut(s)	428, 464, 602, 1104, 1121, 1134
AleI	CACNNNNGTG	1 cut(s)	91
AluBI	AGCT	3 cut(s)	225, 307, 1028
AluI	AGCT	3 cut(s)	225, 307, 1028
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	3 cut(s)	12, 162, 837
AlwI	GGATC	1 cut(s)	325
AlwNI	CAGNNNCTG	1 cut(s)	623
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	15
ApoI	RAATTY	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	569
AspS9I	GGNCC	2 cut(s)	262, 1001
AsuC2I	CCSGG	1 cut(s)	326
AsuII	TTCGAA	1 cut(s)	1007
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	262, 1001
AxyI	CCTNAGG	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	309
BbrPI	CACGTG	1 cut(s)	899
BbsI	GAAGAC	1 cut(s)	773
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	3 cut(s)	410, 519, 833
BceAI	ACGGC	3 cut(s)	325, 372, 714
BciVI	GTATCC	1 cut(s)	24
BclI	TGATCA	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	3 cut(s)	12, 162, 837
BfaI	CTAG	2 cut(s)	1038, 1165
BfuAI	ACCTGC	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	24
BisI	GCNGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	17
BmcAI	AGTACT	2 cut(s)	248, 1056
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	2 cut(s)	262, 1001
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	262, 1001
BmiI	GGNNCC	1 cut(s)	905
BmrFI	CCNGG	1 cut(s)	326
BpiI	GAAGAC	1 cut(s)	773
BpmI	CTGGAG	2 cut(s)	1041, 1143
Bpu14I	TTCGAA	1 cut(s)	1007
BpuEI	CTTGAG	2 cut(s)	45, 146
BpuMI	CCSGG	1 cut(s)	326
BsaAI	YACGTR	1 cut(s)	899
BsaBI	GATNNNNATC	1 cut(s)	969
BsaI	GGTCTC	2 cut(s)	12, 837
BsaJI	CCNNGG	3 cut(s)	341, 673, 885
BsaXI	ACNNNNNCTCC	4 cut(s)	741, 771, 805, 835
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	1079, 1160
Bse21I	CCTNAGG	1 cut(s)	479
Bse3DI	GCAATG	1 cut(s)	1092
Bse8I	GATNNNNATC	1 cut(s)	969
BseDI	CCNNGG	3 cut(s)	341, 673, 885
BseJI	GATNNNNATC	1 cut(s)	969
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	1092
BseMII	CTCAG	2 cut(s)	470, 999
BseNI	ACTGG	2 cut(s)	1079, 1160
BseRI	GAGGAG	6 cut(s)	162, 283, 317, 855, 956, 1038
BseXI	GCAGC	1 cut(s)	27
Bsh1236I	CGCG	1 cut(s)	567
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	3 cut(s)	12, 162, 837
BsmBI	CGTCTC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	294
Bso31I	GGTCTC	2 cut(s)	12, 837
BsoBI	CYCGRG	1 cut(s)	135
Bsp119I	TTCGAA	1 cut(s)	1007
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	6 cut(s)	330, 378, 643, 751, 970, 1094
Bsp19I	CCATGG	1 cut(s)	885
BspACI	CCGC	2 cut(s)	692, 1107
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	2 cut(s)	471, 998
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	1 cut(s)	905
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	325
BspT104I	TTCGAA	1 cut(s)	1007
BspTNI	GGTCTC	2 cut(s)	12, 837
BsrDI	GCAATG	1 cut(s)	1092
BsrI	ACTGG	2 cut(s)	1079, 1160
BssECI	CCNNGG	3 cut(s)	341, 673, 885
BssMI	GATC	6 cut(s)	330, 378, 643, 751, 970, 1094
BssT1I	CCWWGG	2 cut(s)	673, 885
Bst4CI	ACNGT	6 cut(s)	90, 251, 394, 908, 1014, 1150
Bst6I	CTCTTC	3 cut(s)	274, 948, 1085
BstBAI	YACGTR	1 cut(s)	899
BstBI	TTCGAA	1 cut(s)	1007
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	3 cut(s)	364, 479, 985
BstDSI	CCRYGG	2 cut(s)	341, 885
BstENI	CCTNNNNNAGG	1 cut(s)	299
BstFNI	CGCG	1 cut(s)	567
BstHHI	GCGC	1 cut(s)	569
BstKTI	GATC	6 cut(s)	333, 381, 646, 754, 973, 1097
BstMAI	GTCTC	3 cut(s)	12, 162, 837
BstMBI	GATC	6 cut(s)	330, 378, 643, 751, 970, 1094
BstMWI	GCNNNNNNNGC	2 cut(s)	698, 1025
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	324
BstUI	CGCG	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	773
Bsu36I	CCTNAGG	1 cut(s)	479
BsuI	GTATCC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	294
BtgI	CCRYGG	2 cut(s)	341, 885
BtsIMutI	CAGTG	2 cut(s)	95, 211
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	361
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	1 cut(s)	569
Cfr13I	GGNCC	2 cut(s)	262, 1001
Csp6I	GTAC	6 cut(s)	247, 403, 779, 822, 946, 1055
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviQI	GTAC	6 cut(s)	247, 403, 779, 822, 946, 1055
DdeI	CTNAG	3 cut(s)	364, 479, 985
DpnI	GATC	6 cut(s)	332, 380, 645, 753, 972, 1096
DpnII	GATC	6 cut(s)	330, 378, 643, 751, 970, 1094
Eam1104I	CTCTTC	3 cut(s)	274, 948, 1085
EarI	CTCTTC	3 cut(s)	274, 948, 1085
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	673, 885
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	2 cut(s)	12, 837
Eco47I	GGWCC	2 cut(s)	262, 1001
Eco53kI	GAGCTC	1 cut(s)	307
Eco72I	CACGTG	1 cut(s)	899
Eco81I	CCTNAGG	1 cut(s)	479
Eco88I	CYCGRG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	307
EcoNI	CCTNNNNNAGG	1 cut(s)	299
EcoT14I	CCWWGG	2 cut(s)	673, 885
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	2 cut(s)	673, 885
Esp3I	CGTCTC	1 cut(s)	162
FalI	AAGNNNNNCTT	2 cut(s)	706, 738
FbaI	TGATCA	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	16
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	16
FspBI	CTAG	2 cut(s)	1038, 1165
GlaI	GCGC	1 cut(s)	568
GluI	GCNGC	1 cut(s)	16
GsuI	CTGGAG	2 cut(s)	1041, 1143
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	1 cut(s)	326
HhaI	GCGC	1 cut(s)	569
Hin6I	GCGC	1 cut(s)	567
HinP1I	GCGC	1 cut(s)	567
HinfI	GANTC	5 cut(s)	143, 707, 893, 1075, 1113
HpaII	CCGG	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	736
Hpy188I	TCNGA	4 cut(s)	625, 712, 765, 988
Hpy188III	TCNNGA	3 cut(s)	137, 647, 1134
Hpy8I	GTNNAC	1 cut(s)	736
HpyAV	CCTTC	6 cut(s)	403, 422, 803, 867, 1014, 1140
HpyCH4III	ACNGT	6 cut(s)	90, 251, 394, 908, 1014, 1150
HpyCH4IV	ACGT	4 cut(s)	573, 732, 738, 898
HpyCH4V	TGCA	7 cut(s)	185, 498, 522, 590, 617, 806, 1085
HpyF10VI	GCNNNNNNNGC	2 cut(s)	698, 1025
HpyF3I	CTNAG	3 cut(s)	364, 479, 985
HpySE526I	ACGT	4 cut(s)	573, 732, 738, 898
HspAI	GCGC	1 cut(s)	567
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	6 cut(s)	330, 378, 643, 751, 970, 1094
LmnI	GCTCC	3 cut(s)	304, 677, 1025
Lsp1109I	GCAGC	1 cut(s)	27
MaeI	CTAG	2 cut(s)	1038, 1165
MaeII	ACGT	4 cut(s)	573, 732, 738, 898
MaeIII	GTNAC	2 cut(s)	95, 694
MalI	GATC	6 cut(s)	332, 380, 645, 753, 972, 1096
MboI	GATC	6 cut(s)	330, 378, 643, 751, 970, 1094
MboII	GAAGA	9 cut(s)	206, 291, 476, 479, 714, 778, 965, 1102, 1122
MfeI	CAATTG	2 cut(s)	550, 602
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	6 cut(s)	163, 186, 550, 602, 741, 1152
MlyI	GAGTC	1 cut(s)	1084
MseI	TTAA	3 cut(s)	389, 537, 638
MslI	CAYNNNNRTG	1 cut(s)	91
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	326
MunI	CAATTG	2 cut(s)	550, 602
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	2 cut(s)	698, 1025
NciI	CCSGG	1 cut(s)	326
NcoI	CCATGG	1 cut(s)	885
NdeII	GATC	6 cut(s)	330, 378, 643, 751, 970, 1094
NlaIV	GGNNCC	1 cut(s)	905
NspI	RCATGY	1 cut(s)	350
NspV	TTCGAA	1 cut(s)	1007
OliI	CACNNNNGTG	1 cut(s)	91
PaeR7I	CTCGAG	1 cut(s)	135
PaqCI	CACCTGC	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	904
PfeI	GAWTC	4 cut(s)	143, 707, 893, 1113
PkrI	GCNGC	1 cut(s)	17
PleI	GAGTC	1 cut(s)	1083
PmaCI	CACGTG	1 cut(s)	899
PmlI	CACGTG	1 cut(s)	899
PpsI	GAGTC	1 cut(s)	1083
Ppu21I	YACGTR	1 cut(s)	899
Psp124BI	GAGCTC	1 cut(s)	309
PspCI	CACGTG	1 cut(s)	899
PspN4I	GGNNCC	1 cut(s)	905
PspPI	GGNCC	2 cut(s)	262, 1001
PstNI	CAGNNNCTG	1 cut(s)	623
RsaI	GTAC	6 cut(s)	248, 404, 780, 823, 947, 1056
RsaNI	GTAC	6 cut(s)	247, 403, 779, 822, 946, 1055
RseI	CAYNNNNRTG	1 cut(s)	91
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	3 cut(s)	389, 537, 638
SatI	GCNGC	1 cut(s)	16
Sau3AI	GATC	6 cut(s)	330, 378, 643, 751, 970, 1094
Sau96I	GGNCC	2 cut(s)	262, 1001
ScaI	AGTACT	2 cut(s)	248, 1056
SchI	GAGTC	1 cut(s)	1084
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	9 cut(s)	121, 227, 309, 576, 735, 741, 878, 901, 1030
Sfr274I	CTCGAG	1 cut(s)	135
SfuI	TTCGAA	1 cut(s)	1007
SinI	GGWCC	2 cut(s)	262, 1001
SlaI	CTCGAG	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	91
SmlI	CTYRAG	4 cut(s)	9, 60, 125, 135
SmoI	CTYRAG	4 cut(s)	9, 60, 125, 135
Sse9I	AATT	6 cut(s)	163, 186, 550, 602, 741, 1152
SsiI	CCGC	2 cut(s)	692, 1107
SspMI	CTAG	2 cut(s)	1038, 1165
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	2 cut(s)	673, 885
TaaI	ACNGT	6 cut(s)	90, 251, 394, 908, 1014, 1150
TaiI	ACGT	4 cut(s)	576, 735, 741, 901
TaqI	TCGA	4 cut(s)	136, 309, 634, 1007
TasI	AATT	6 cut(s)	163, 186, 550, 602, 741, 1152
TatI	WGTACW	2 cut(s)	246, 1054
TfiI	GAWTC	4 cut(s)	143, 707, 893, 1113
Tru1I	TTAA	3 cut(s)	389, 537, 638
Tru9I	TTAA	3 cut(s)	389, 537, 638
TscAI	CASTG	2 cut(s)	95, 211
TseI	GCWGC	1 cut(s)	15
TspDTI	ATGAA	7 cut(s)	56, 135, 699, 734, 950, 966, 1103
TspRI	CASTG	2 cut(s)	95, 211
VpaK11BI	GGWCC	2 cut(s)	262, 1001
XagI	CCTNNNNNAGG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	163
XceI	RCATGY	1 cut(s)	350
XhoI	CTCGAG	1 cut(s)	135
XspI	CTAG	2 cut(s)	1038, 1165
ZrmI	AGTACT	2 cut(s)	248, 1056

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.