Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0011832

Physical Location & Seq

Genomic Coordinates Forward (+)

9263598 .. 9265571

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0118100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGGCTCAACAAATGGCTTAGCCAGTGCACATGGGAAGCAACCTCTATTTTCTTTTGGGGTAATCTCCGATGTCCAGTATGCTGATATTCCTGATGGCCGATCTTTCCTTGGTGTTCCACGATATTATCGCCATAGCATTTTTGTATTGAAAAGAGCAGTTCAAAAATGGAATGATCAGAAGAAGCATAAATTTCTGATCAACTTTGGGGATATTGTTGATGGTTTTTGCCCAAAGGATCAGTCACTCAATGCTGTAACGAATGTTGTGGAGGAATTTGAGAATTTCAATGGCCCCGTCTATCATATGATTGGTAATCACTGCCTCTACAATCTTCCCCGCAAGCAATTACTACCACTATTAAAGATTCCGAGTATCGATGGTCGTGCCTACTATGACTTTTCACCAACCCCAGAATTCAGATTTGTTGTTCTGGATGCCTATGATATCAGTGCCATTGGTTGGCCTCAAGATCATCCAAGTGCAATTGAGGCTTTGAGGTTTCTACAGGAGAAGAATCCAAATACAGACAAGAACAGCCCGGCTGGACTGGAAGGCCTTGAGAGAAGGTTCCTTATGTTCAATGGAGCAGTTGGAAAAGAACAATTGGAATGGTTAGACAGCATTCTTCAGGAAGCAACAGAGTTGAAACAAAAAGTAGTGGTTGGTTGCCATCTGCCTTTAGATCCTGGAGCGTCATCCAAAGAAGCACTTTTGTGGAATTATGACGAAGTCATGGGTGTTATTCACAGATACAATTGCGTGAAGGTTTGCCTTGCTGGGCATGACCACAAAGGTGGTCACTCAATTGATTCCTGTGGAGTACATCACAGAGTTCTTGAAGCTGCCCTTGAGTGCCCACCTGGGACAGATGCCTATGGATATATAGATGTTTATGATGATAAGCTATCTCTTTCTGGTACTGACCGGATGGCAAGCACTGACATGCAATTCAATCCTCAATCAGACTTTCGAGAAAAACAGCATCAAAGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

332

Amino Acids

37.4

Weight (kDa)

5.95

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	18 - 265	7.5e-11	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17905 AT4G17905
fragaria_vesca	FvH4_5g22340
malus_domestica	MD00G1071800.v1.1 MD06G1035800.v1.1
prunus_persica	Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1 Prupe.5G033900_v2.0.a1
pyrus_communis	pycom16g24230
rosa_chinensis	RchiOBHm_Chr7g0210051
rosa_laevigata	RLG00000003068
rosa_multiflora	Rmu_sc0004509.1_g000028
rosa_roxburghii	Rroxscaffold_3G00248650
rosa_rugosa	Rorug07G0118100
rosa_samantha	Rh7BG246500 Rh7CG268700 Rh7DG258800
rosa_wichuraiana	Rw7G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	462
AciI	CCGC	1 cut(s)	340
AclWI	GGATC	2 cut(s)	246, 680
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	4 cut(s)	191, 275, 283, 416
AcuI	CTGAAG	1 cut(s)	614
AfaI	GTAC	2 cut(s)	825, 922
AfiI	CCNNNNNNNGG	1 cut(s)	462
AgsI	TTSAA	7 cut(s)	151, 164, 289, 583, 649, 842, 955
AjnI	CCWGG	2 cut(s)	688, 862
AleI	CACNNNNGTG	2 cut(s)	715, 795
AluBI	AGCT	2 cut(s)	845, 907
AluI	AGCT	2 cut(s)	845, 907
Alw21I	GWGCWC	1 cut(s)	31
Alw44I	GTGCAC	1 cut(s)	27
AlwI	GGATC	2 cut(s)	246, 680
AoxI	GGCC	4 cut(s)	97, 292, 464, 556
ApaLI	GTGCAC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	845
ApoI	RAATTY	4 cut(s)	191, 275, 283, 416
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	1 cut(s)	396
BaeGI	GKGCMC	2 cut(s)	31, 860
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	832
BccI	CCATC	5 cut(s)	89, 215, 374, 681, 925
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	2 cut(s)	690, 864
BclI	TGATCA	2 cut(s)	175, 198
BcnI	CCSGG	1 cut(s)	542
BfmI	CTRYAG	1 cut(s)	506
BisI	GCNGC	1 cut(s)	846
BlpI	GCTNAGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	847
Bme1390I	CCNGG	3 cut(s)	542, 690, 864
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	295, 572
BmrFI	CCNGG	3 cut(s)	542, 690, 864
BmsI	GCATC	3 cut(s)	427, 862, 994
BpmI	CTGGAG	1 cut(s)	711
Bpu1102I	GCTNAGC	1 cut(s)	19
BpuEI	CTTGAG	3 cut(s)	453, 581, 872
BpuMI	CCSGG	1 cut(s)	542
Bsa29I	ATCGAT	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	109, 863
BsaWI	WCCGGW	1 cut(s)	927
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse1I	ACTGG	3 cut(s)	24, 76, 555
BseBI	CCWGG	2 cut(s)	690, 864
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	109, 863
BseGI	GGATG	4 cut(s)	442, 475, 698, 936
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseNI	ACTGG	3 cut(s)	24, 76, 555
BseSI	GKGCMC	2 cut(s)	31, 860
BseXI	GCAGC	1 cut(s)	832
BseYI	CCCAGC	1 cut(s)	779
BshFI	GGCC	4 cut(s)	99, 294, 466, 558
BshVI	ATCGAT	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	542, 928
BslFI	GGGAC	1 cut(s)	880
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmFI	GGGAC	1 cut(s)	880
BsmI	GAATGC	1 cut(s)	624
BsnI	GGCC	4 cut(s)	99, 294, 466, 558
Bsp1286I	GDGCHC	3 cut(s)	8, 31, 860
Bsp143I	GATC	6 cut(s)	101, 175, 198, 238, 472, 685
Bsp1720I	GCTNAGC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	340
BspANI	GGCC	4 cut(s)	99, 294, 466, 558
BspDI	ATCGAT	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	295, 572
BspPI	GGATC	2 cut(s)	246, 680
BsrI	ACTGG	3 cut(s)	24, 76, 555
BssECI	CCNNGG	2 cut(s)	109, 863
BssMI	GATC	6 cut(s)	101, 175, 198, 238, 472, 685
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	2 cut(s)	690, 864
BstC8I	GCNNGC	2 cut(s)	344, 937
BstDEI	CTNAG	1 cut(s)	19
BstF5I	GGATG	4 cut(s)	442, 475, 698, 936
BstKTI	GATC	6 cut(s)	104, 178, 201, 241, 475, 688
BstMBI	GATC	6 cut(s)	101, 175, 198, 238, 472, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNI	CCWGG	2 cut(s)	690, 864
BstNSI	RCATGY	1 cut(s)	949
BstSCI	CCNGG	3 cut(s)	540, 688, 862
BstSFI	CTRYAG	1 cut(s)	506
BstSLI	GKGCMC	2 cut(s)	31, 860
BstV1I	GCAGC	1 cut(s)	832
BstX2I	RGATCY	1 cut(s)	685
BstXI	CCANNNNNNTGG	1 cut(s)	797
BstYI	RGATCY	1 cut(s)	685
Bsu15I	ATCGAT	1 cut(s)	378
BsuRI	GGCC	4 cut(s)	99, 294, 466, 558
BsuTUI	ATCGAT	1 cut(s)	378
BtsCI	GGATG	4 cut(s)	442, 475, 698, 936
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	4 cut(s)	31, 319, 457, 939
Cac8I	GCNNGC	2 cut(s)	344, 937
Cfr13I	GGNCC	1 cut(s)	293
ClaI	ATCGAT	1 cut(s)	378
CseI	GACGC	1 cut(s)	684
Csp6I	GTAC	2 cut(s)	824, 921
CviAII	CATG	4 cut(s)	32, 736, 785, 946
CviQI	GTAC	2 cut(s)	824, 921
DdeI	CTNAG	1 cut(s)	19
DpnI	GATC	6 cut(s)	103, 177, 200, 240, 474, 687
DpnII	GATC	6 cut(s)	101, 175, 198, 238, 472, 685
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	109
Eco147I	AGGCCT	1 cut(s)	558
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	614
EcoRI	GAATTC	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	688, 862
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	4 cut(s)	35, 739, 788, 949
FalI	AAGNNNNNCTT	4 cut(s)	696, 728, 834, 866
FaqI	GGGAC	1 cut(s)	880
FatI	CATG	4 cut(s)	31, 735, 784, 945
FauI	CCCGC	1 cut(s)	347
FauNDI	CATATG	1 cut(s)	306
FbaI	TGATCA	2 cut(s)	175, 198
Fnu4HI	GCNGC	1 cut(s)	846
FokI	GGATG	4 cut(s)	449, 462, 685, 943
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	846
GluI	GCNGC	1 cut(s)	846
GsaI	CCCAGC	1 cut(s)	783
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	4 cut(s)	99, 294, 466, 558
HapII	CCGG	2 cut(s)	542, 928
HgaI	GACGC	1 cut(s)	684
Hin1II	CATG	4 cut(s)	35, 739, 788, 949
HinfI	GANTC	3 cut(s)	367, 517, 812
HpaII	CCGG	2 cut(s)	542, 928
HphI	GGTGA	1 cut(s)	396
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	6 cut(s)	70, 180, 198, 372, 422, 967
Hpy188III	TCNNGA	6 cut(s)	92, 434, 470, 632, 839, 974
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	3 cut(s)	548, 561, 760
HpyCH4V	TGCA	3 cut(s)	29, 485, 949
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	1 cut(s)	19
Hsp92II	CATG	4 cut(s)	35, 739, 788, 949
Ksp22I	TGATCA	2 cut(s)	175, 198
Kzo9I	GATC	6 cut(s)	101, 175, 198, 238, 472, 685
LmnI	GCTCC	2 cut(s)	587, 692
Lsp1109I	GCAGC	1 cut(s)	832
LweI	GCATC	3 cut(s)	427, 862, 994
MaeIII	GTNAC	3 cut(s)	243, 256, 800
MalI	GATC	6 cut(s)	103, 177, 200, 240, 474, 687
MboI	GATC	6 cut(s)	101, 175, 198, 238, 472, 685
MboII	GAAGA	4 cut(s)	193, 326, 526, 620
MfeI	CAATTG	4 cut(s)	486, 605, 757, 807
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	3 cut(s)	8, 31, 860
MmeI	TCCRAC	1 cut(s)	574
MnlI	CCTC	7 cut(s)	54, 265, 335, 477, 484, 492, 969
MseI	TTAA	1 cut(s)	362
MslI	CAYNNNNRTG	4 cut(s)	480, 715, 795, 944
MspI	CCGG	2 cut(s)	542, 928
MspR9I	CCNGG	3 cut(s)	542, 690, 864
MunI	CAATTG	4 cut(s)	486, 605, 757, 807
Mva1269I	GAATGC	1 cut(s)	624
MvaI	CCWGG	2 cut(s)	690, 864
MwoI	GCNNNNNNNGC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	542
NdeI	CATATG	1 cut(s)	306
NdeII	GATC	6 cut(s)	101, 175, 198, 238, 472, 685
NlaIII	CATG	4 cut(s)	35, 739, 788, 949
NlaIV	GGNNCC	2 cut(s)	295, 572
NmuCI	GTSAC	2 cut(s)	243, 800
NspI	RCATGY	1 cut(s)	949
OliI	CACNNNNGTG	2 cut(s)	715, 795
PceI	AGGCCT	1 cut(s)	558
PctI	GAATGC	1 cut(s)	624
PfeI	GAWTC	3 cut(s)	367, 517, 812
PflFI	GACNNNGTC	1 cut(s)	731
PflMI	CCANNNNNTGG	1 cut(s)	462
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	1 cut(s)	847
Psp6I	CCWGG	2 cut(s)	688, 862
PspFI	CCCAGC	1 cut(s)	779
PspGI	CCWGG	2 cut(s)	688, 862
PspN4I	GGNNCC	2 cut(s)	295, 572
PspPI	GGNCC	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	685
PsyI	GACNNNGTC	1 cut(s)	731
RsaI	GTAC	2 cut(s)	825, 922
RsaNI	GTAC	2 cut(s)	824, 921
RseI	CAYNNNNRTG	4 cut(s)	480, 715, 795, 944
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	1 cut(s)	846
Sau3AI	GATC	6 cut(s)	101, 175, 198, 238, 472, 685
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	3 cut(s)	542, 690, 864
SduI	GDGCHC	3 cut(s)	8, 31, 860
SetI	ASST	9 cut(s)	46, 503, 572, 771, 799, 847, 865, 909, 995
SfaNI	GCATC	3 cut(s)	427, 862, 994
SfcI	CTRYAG	1 cut(s)	506
SmiMI	CAYNNNNRTG	4 cut(s)	480, 715, 795, 944
SmlI	CTYRAG	3 cut(s)	468, 560, 851
SmoI	CTYRAG	3 cut(s)	468, 560, 851
SseBI	AGGCCT	1 cut(s)	558
SsiI	CCGC	1 cut(s)	340
StuI	AGGCCT	1 cut(s)	558
StyD4I	CCNGG	3 cut(s)	540, 688, 862
StyI	CCWWGG	1 cut(s)	109
TaqI	TCGA	2 cut(s)	378, 973
TatI	WGTACW	1 cut(s)	823
TfiI	GAWTC	3 cut(s)	367, 517, 812
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	4 cut(s)	31, 326, 457, 946
TseFI	GTSAC	2 cut(s)	243, 800
TseI	GCWGC	1 cut(s)	845
Tsp45I	GTSAC	2 cut(s)	243, 800
TspRI	CASTG	4 cut(s)	31, 326, 457, 946
Tth111I	GACNNNGTC	1 cut(s)	731
Van91I	CCANNNNNTGG	1 cut(s)	462
VneI	GTGCAC	1 cut(s)	27
XapI	RAATTY	4 cut(s)	191, 275, 283, 416
XceI	RCATGY	1 cut(s)	949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.