Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016563

Physical Location & Seq

Genomic Coordinates Reverse (-)

9963051 .. 9964090

Gene Structure 1040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTCGACAATAATTCCTTCACCTCTGGCACCGCAACCTCCGCAACAACATTACGTTACACCGCCTCTCACGGTGATCCTCACCGTAATCCTCCTCGTTTTCTTCTTCATCGGTTTCTTCACTCTCTATTTTTGCAAGTGTTTCCTCGACACAATGGTGCAAGCTTGGCGTCTCCACCACGGCGGAGACACCGTATCCGACAATCCCCTCCAGCAACCGGAAGCTCCACCGGTAAATCCCGGCCTTGAACTTCGAATCATTAACTCATTTCCCACTTTTCCTTACTCCTCCGTTAAAGATCTCCGGGAAGAGAAATACGGCCTCGAATGCGCCATTTGTCTTCTCGAATTCGACGGAGATCACGTGCTACGTCTCTTGACAACATGCTACCACGTGTTCCACCAAGAATGCATCGATCTCTGGTTCGAATCTCACAGAACTTGCCCTGTTTGTCGTCGGGATCTTGATCCTCCTCCGCCACCGGAAAACACCAAGCCTACTGTCGATGAGATGATCATAGATGTGATTCAAGAAACAAGCGACGACGAAGAAGACGATCATCATCGTCAGCAGACAACAACACAGATTGATACTTGGCCATCTTCAGGACAGACCAGTAGCATCAAAAAGGAACAAAACTTGCCGGAGAAATTCTCTAGATCGCATTCTACGGGACACTCGATAGTGAGAAATAAACCGGAGGAAGAAGATAAGTATACATTGAGATTACCAGAACATGTAAAGATTAAGGTCACGAGAGGACATAGCCAGACAGAGAGTTGTGTTACGTTCGCTGAACTTATTAGAAACAGAGGATATGATCATCGCCGGTTTGGTGAAGTCTCTGGTCAAACGCAATCTAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

289

Amino Acids

33.24

Weight (kDa)

5.58

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	109 - 152	3.8e-13	Ring finger domain
zf-RING_11	PF17123	109 - 138	1.3e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	109 - 151	2.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	109 - 153	2.9e-06	zinc-RING finger domain
zf-RING_UBOX	PF13445	110 - 149	3.5e-07	RING-type zinc-finger
zf-C3HC4	PF00097	110 - 151	1.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	119 - 152	7.3e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17920 AT5G46650
fragaria_vesca	FvH4_5g22380
malus_domestica	MD06G1036300.v1.1
prunus_persica	Prupe.5G033100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0210121
rosa_laevigata	RLG00000003063
rosa_multiflora	Rmu_sc0025548.1_g000001
rosa_rugosa	Rorug07G0118700
rosa_samantha	Rh7AG252200 Rh7BG247000 Rh7CG269200 Rh7DG259500
rosa_wichuraiana	Rw7G021430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AccI	GTMKAC	2 cut(s)	5, 716
AciI	CCGC	5 cut(s)	32, 41, 62, 183, 476
AclWI	GGATC	3 cut(s)	70, 461, 468
AcoI	YGGCCR	1 cut(s)	596
AcsI	RAATTY	2 cut(s)	347, 650
AcuI	CTGAAG	1 cut(s)	588
AcvI	CACGTG	2 cut(s)	364, 394
AcyI	GRCGYC	1 cut(s)	169
AfiI	CCNNNNNNNGG	2 cut(s)	217, 605
AflIII	ACRYGT	2 cut(s)	393, 736
AgeI	ACCGGT	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	248, 530
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	2 cut(s)	164, 224
AluI	AGCT	2 cut(s)	164, 224
Alw26I	GTCTC	4 cut(s)	176, 180, 377, 847
AlwI	GGATC	3 cut(s)	70, 461, 468
AoxI	GGCC	3 cut(s)	241, 319, 596
ApoI	RAATTY	2 cut(s)	347, 650
AsiGI	ACCGGT	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	332
AsuC2I	CCSGG	2 cut(s)	240, 305
AsuHPI	GGTGA	4 cut(s)	12, 73, 85, 848
AsuII	TTCGAA	2 cut(s)	253, 426
BalI	TGGCCA	1 cut(s)	598
BanI	GGYRCC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	754
BbrPI	CACGTG	2 cut(s)	364, 394
BbsI	GAAGAC	2 cut(s)	332, 558
BccI	CCATC	1 cut(s)	607
BceAI	ACGGC	2 cut(s)	196, 334
BciVI	GTATCC	1 cut(s)	205
BclI	TGATCA	2 cut(s)	513, 820
BcnI	CCSGG	2 cut(s)	240, 305
BcoDI	GTCTC	4 cut(s)	176, 180, 377, 847
BfaI	CTAG	1 cut(s)	657
BfuI	GTATCC	1 cut(s)	205
BglII	AGATCT	1 cut(s)	298
Bme1390I	CCNGG	2 cut(s)	240, 305
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	2 cut(s)	240, 305
BmsI	GCATC	2 cut(s)	420, 630
BpiI	GAAGAC	2 cut(s)	332, 558
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
BpmI	CTGGAG	1 cut(s)	194
Bpu14I	TTCGAA	2 cut(s)	253, 426
BpuMI	CCSGG	2 cut(s)	240, 305
Bsa29I	ATCGAT	1 cut(s)	414
BsaAI	YACGTR	2 cut(s)	364, 394
BsaBI	GATNNNNATC	2 cut(s)	465, 561
BsaHI	GRCGYC	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	178
BsaWI	WCCGGW	4 cut(s)	217, 229, 481, 697
BsaXI	ACNNNNNCTCC	4 cut(s)	177, 207, 348, 378
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 605
Bse118I	RCCGGY	2 cut(s)	229, 828
Bse1I	ACTGG	1 cut(s)	615
Bse8I	GATNNNNATC	2 cut(s)	465, 561
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	178
BseJI	GATNNNNATC	2 cut(s)	465, 561
BseLI	CCNNNNNNNGG	2 cut(s)	217, 605
BseNI	ACTGG	1 cut(s)	615
BseRI	GAGGAG	3 cut(s)	83, 277, 462
BshFI	GGCC	3 cut(s)	243, 321, 598
BshNI	GGYRCC	1 cut(s)	28
BshTI	ACCGGT	1 cut(s)	229
BshVI	ATCGAT	1 cut(s)	414
BsiSI	CCGG	8 cut(s)	218, 230, 240, 304, 482, 644, 698, 829
BslFI	GGGAC	1 cut(s)	687
BslI	CCNNNNNNNGG	2 cut(s)	217, 605
BsmAI	GTCTC	4 cut(s)	176, 180, 377, 847
BsmBI	CGTCTC	2 cut(s)	176, 377
BsmFI	GGGAC	1 cut(s)	687
BsmI	GAATGC	3 cut(s)	332, 413, 664
BsnI	GGCC	3 cut(s)	243, 321, 598
Bsp119I	TTCGAA	2 cut(s)	253, 426
BspACI	CCGC	5 cut(s)	32, 41, 62, 183, 476
BspANI	GGCC	3 cut(s)	243, 321, 598
BspDI	ATCGAT	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	3 cut(s)	70, 461, 468
BspT104I	TTCGAA	2 cut(s)	253, 426
BspT107I	GGYRCC	1 cut(s)	28
BsrFI	RCCGGY	2 cut(s)	229, 828
BsrI	ACTGG	1 cut(s)	615
BssAI	RCCGGY	2 cut(s)	229, 828
BssECI	CCNNGG	1 cut(s)	178
BssNAI	GTATAC	1 cut(s)	717
BssNI	GRCGYC	1 cut(s)	169
BssSI	CACGAG	1 cut(s)	754
Bst1107I	GTATAC	1 cut(s)	717
Bst2BI	CACGAG	1 cut(s)	754
Bst4CI	ACNGT	4 cut(s)	73, 85, 193, 502
Bst6I	CTCTTC	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	169
BstBAI	YACGTR	2 cut(s)	364, 394
BstBI	TTCGAA	2 cut(s)	253, 426
BstC8I	GCNNGC	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	332
BstMAI	GTCTC	4 cut(s)	176, 180, 377, 847
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 166, 327
BstNSI	RCATGY	2 cut(s)	387, 740
BstSCI	CCNGG	2 cut(s)	238, 303
BstV2I	GAAGAC	2 cut(s)	332, 558
BstX2I	RGATCY	2 cut(s)	298, 460
BstYI	RGATCY	2 cut(s)	298, 460
BstZ17I	GTATAC	1 cut(s)	717
Bsu15I	ATCGAT	1 cut(s)	414
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	3 cut(s)	243, 321, 598
BsuTUI	ATCGAT	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	178
BtgZI	GCGATG	1 cut(s)	809
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	1 cut(s)	332
Cfr10I	RCCGGY	2 cut(s)	229, 828
ClaI	ATCGAT	1 cut(s)	414
CseI	GACGC	1 cut(s)	158
CspAI	ACCGGT	1 cut(s)	229
CviAII	CATG	2 cut(s)	384, 737
CviJI	RGCY	7 cut(s)	164, 224, 243, 321, 496, 598, 768
CviKI_1	RGCY	7 cut(s)	164, 224, 243, 321, 496, 598, 768
EaeI	YGGCCR	1 cut(s)	596
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EciI	GGCGGA	2 cut(s)	198, 465
Eco57I	CTGAAG	1 cut(s)	588
Eco72I	CACGTG	2 cut(s)	364, 394
EcoRI	GAATTC	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	413
Esp3I	CGTCTC	2 cut(s)	176, 377
FaeI	CATG	2 cut(s)	387, 740
FaiI	YATR	6 cut(s)	385, 518, 717, 738, 765, 819
FaqI	GGGAC	1 cut(s)	687
FatI	CATG	2 cut(s)	383, 736
FbaI	TGATCA	2 cut(s)	513, 820
FblI	GTMKAC	2 cut(s)	5, 716
FspBI	CTAG	1 cut(s)	657
GlaI	GCGC	1 cut(s)	331
GsuI	CTGGAG	1 cut(s)	194
HaeIII	GGCC	3 cut(s)	243, 321, 598
HapII	CCGG	8 cut(s)	218, 230, 240, 304, 482, 644, 698, 829
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	169
Hin1II	CATG	2 cut(s)	387, 740
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	162
HinfI	GANTC	3 cut(s)	255, 428, 526
HpaII	CCGG	8 cut(s)	218, 230, 240, 304, 482, 644, 698, 829
HphI	GGTGA	4 cut(s)	12, 73, 85, 848
Hpy166II	GTNNAC	2 cut(s)	6, 717
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	8 cut(s)	344, 376, 458, 464, 530, 606, 657, 754
Hpy8I	GTNNAC	2 cut(s)	6, 717
Hpy99I	CGWCG	4 cut(s)	356, 459, 545, 548
HpyAV	CCTTC	1 cut(s)	27
HpyCH4III	ACNGT	4 cut(s)	73, 85, 193, 502
HpyCH4IV	ACGT	5 cut(s)	54, 363, 370, 393, 788
HpyCH4V	TGCA	3 cut(s)	135, 160, 411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 166, 327
HpySE526I	ACGT	5 cut(s)	54, 363, 370, 393, 788
Hsp92I	GRCGYC	1 cut(s)	169
Hsp92II	CATG	2 cut(s)	387, 740
HspAI	GCGC	1 cut(s)	330
Ksp22I	TGATCA	2 cut(s)	513, 820
LmnI	GCTCC	1 cut(s)	229
LweI	GCATC	2 cut(s)	420, 630
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	5 cut(s)	54, 363, 370, 393, 788
MaeIII	GTNAC	3 cut(s)	55, 751, 784
MflI	RGATCY	2 cut(s)	298, 460
MlsI	TGGCCA	1 cut(s)	598
MluCI	AATT	4 cut(s)	12, 347, 650, 865
MluNI	TGGCCA	1 cut(s)	598
MmeI	TCCRAC	1 cut(s)	222
Mox20I	TGGCCA	1 cut(s)	598
Mph1103I	ATGCAT	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	598
MseI	TTAA	3 cut(s)	261, 294, 747
MslI	CAYNNNNRTG	2 cut(s)	155, 521
Msp20I	TGGCCA	1 cut(s)	598
MspI	CCGG	8 cut(s)	218, 230, 240, 304, 482, 644, 698, 829
MspR9I	CCNGG	2 cut(s)	240, 305
Mva1269I	GAATGC	3 cut(s)	332, 413, 664
MwoI	GCNNNNNNNGC	3 cut(s)	40, 166, 327
NciI	CCSGG	2 cut(s)	240, 305
NlaIII	CATG	2 cut(s)	387, 740
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	751
NsiI	ATGCAT	1 cut(s)	413
NspI	RCATGY	2 cut(s)	387, 740
NspV	TTCGAA	2 cut(s)	253, 426
OliI	CACNNNNGTG	1 cut(s)	155
PciI	ACATGT	1 cut(s)	736
PcsI	WCGNNNNNNNCGW	3 cut(s)	360, 552, 677
PctI	GAATGC	3 cut(s)	332, 413, 664
PfeI	GAWTC	3 cut(s)	255, 428, 526
PfoI	TCCNGGA	1 cut(s)	303
PinAI	ACCGGT	1 cut(s)	229
PmaCI	CACGTG	2 cut(s)	364, 394
PmlI	CACGTG	2 cut(s)	364, 394
Ppu21I	YACGTR	2 cut(s)	364, 394
PscI	ACATGT	1 cut(s)	736
PspCI	CACGTG	2 cut(s)	364, 394
PspN4I	GGNNCC	1 cut(s)	30
PsuI	RGATCY	2 cut(s)	298, 460
RseI	CAYNNNNRTG	2 cut(s)	155, 521
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	261, 294, 747
ScrFI	CCNGG	2 cut(s)	240, 305
SfaNI	GCATC	2 cut(s)	420, 630
SfuI	TTCGAA	2 cut(s)	253, 426
SmiMI	CAYNNNNRTG	2 cut(s)	155, 521
Sse9I	AATT	4 cut(s)	12, 347, 650, 865
SsiI	CCGC	5 cut(s)	32, 41, 62, 183, 476
SspMI	CTAG	1 cut(s)	657
StyD4I	CCNGG	2 cut(s)	238, 303
TaaI	ACNGT	4 cut(s)	73, 85, 193, 502
TaiI	ACGT	5 cut(s)	57, 366, 373, 396, 791
TasI	AATT	4 cut(s)	12, 347, 650, 865
TfiI	GAWTC	3 cut(s)	255, 428, 526
Tru1I	TTAA	3 cut(s)	261, 294, 747
Tru9I	TTAA	3 cut(s)	261, 294, 747
TseFI	GTSAC	1 cut(s)	751
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	1 cut(s)	97
TspGWI	ACGGA	2 cut(s)	280, 369
XapI	RAATTY	2 cut(s)	347, 650
XbaI	TCTAGA	1 cut(s)	656
XceI	RCATGY	2 cut(s)	387, 740
XmiI	GTMKAC	2 cut(s)	5, 716
XspI	CTAG	1 cut(s)	657
Zsp2I	ATGCAT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.