Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0016563

Physical Location & Seq

Genomic Coordinates Reverse (-)

13769675 .. 13770460

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGAAAATGTCCTCACCTCTCTTCAGCGCACCCCCTCCGGCCACCTTGTGGGTGTACCTGTTCCTCCCAAAGAAGGCCTCGACCACTCACTAATACAATCATTTCCGACCTTCATCTACGCAAGTGTAAAAGATTTTCGCATAGAGAAGTACGGTTTAGAATGCGCAATTTGCTTGGTGGAGTTTGAAGATGATAGCATGCTACGTCTTTTAACAGCTTGTTGCCATGTCTTCCACCAAGAATGCATCGACTTGTGGCTCGAGTCTCACAAAACATGTCCCTTTTGCCGCGGAAACCTTGAATTGTCCCAAAGTATAATGGACAAGTCTCCGGTGCTTGCTCATGAGAATGCCATCCACGAAATTAATGAAGGTCATGACTCCATATACGATCAAGATGAAATCCGAATTGACATTGAAGACAAAGAAGGCGAAGAAAGACAAGAAGAAAGTCATAATCATCATCAACAAAATTTGGCTGATAAAGCTATTTCGAATGTAAAAGCAGATCAACAAATTGATGGACAAAATGAAGAGAATGAAACGGAAAGATTTTCGAGGTCACACTCGACAGGACACTCTATAGTTAGGCCTAGACAAGAGGAGGATAGGTATACGCTCAGATTACCAGAGAATGTGAAGATAAGACTTCTTAGAGGGCACAATCCGACAGGAAGTTCTACTACATTTGGGGAGTTTTCAAGACAAAGAGGCAGTTCCAAAGGTGGCTTTGGAGAGGTCTCTGAGTCTAGCTCTAGAGCTGGTGGAGAGATCAGCAAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

262

Amino Acids

29.54

Weight (kDa)

5.24

Isoelectric Point (pI)

65.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	54 - 97	8.7e-14	Ring finger domain
zf-RING_11	PF17123	54 - 83	9.5e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	54 - 96	1.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	55 - 96	7.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	58 - 97	1e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17920 AT5G46650
fragaria_vesca	FvH4_5g22380
malus_domestica	MD06G1036300.v1.1
prunus_persica	Prupe.5G033100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0210121
rosa_laevigata	RLG00000003063
rosa_multiflora	Rmu_sc0025548.1_g000001
rosa_rugosa	Rorug07G0118700
rosa_samantha	Rh7AG252200 Rh7BG247000 Rh7CG269200 Rh7DG259500
rosa_wichuraiana	Rw7G021430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	166
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	614
AccII	CGCG	1 cut(s)	291
AciI	CCGC	2 cut(s)	289, 291
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	472
AcuI	CTGAAG	1 cut(s)	8
AdeI	CACNNNGTG	1 cut(s)	49
AfaI	GTAC	2 cut(s)	57, 152
AfiI	CCNNNNNNNGG	2 cut(s)	49, 74
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	4 cut(s)	188, 302, 419, 702
AluBI	AGCT	4 cut(s)	218, 488, 753, 761
AluI	AGCT	4 cut(s)	218, 488, 753, 761
Alw26I	GTCTC	3 cut(s)	270, 333, 745
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	40, 76, 590
ApoI	RAATTY	1 cut(s)	472
AseI	ATTAAT	1 cut(s)	366
AspLEI	GCGC	2 cut(s)	30, 167
AsuHPI	GGTGA	1 cut(s)	7
AsuII	TTCGAA	1 cut(s)	494
AvaI	CYCGRG	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	663
BarI	GAAGNNNNNNTAC	2 cut(s)	667, 699
BbsI	GAAGAC	2 cut(s)	223, 426
BccI	CCATC	2 cut(s)	362, 515
BcoDI	GTCTC	3 cut(s)	270, 333, 745
BfaI	CTAG	3 cut(s)	594, 750, 756
BfmI	CTRYAG	1 cut(s)	582
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
BmeT110I	CYCGRG	1 cut(s)	260
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	2 cut(s)	223, 426
BplI	GAGNNNNNCTC	2 cut(s)	737, 769
Bpu14I	TTCGAA	1 cut(s)	494
BsaI	GGTCTC	1 cut(s)	745
BsaJI	CCNNGG	1 cut(s)	289
BsaWI	WCCGGW	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 74
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	2 cut(s)	49, 74
BseMII	CTCAG	2 cut(s)	634, 735
BseRI	GAGGAG	1 cut(s)	617
BseSI	GKGCMC	1 cut(s)	663
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	3 cut(s)	42, 78, 592
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	39, 332
BslFI	GGGAC	2 cut(s)	264, 292
BslI	CCNNNNNNNGG	2 cut(s)	49, 74
BsmAI	GTCTC	3 cut(s)	270, 333, 745
BsmFI	GGGAC	2 cut(s)	264, 292
BsmI	GAATGC	3 cut(s)	167, 248, 355
BsnI	GGCC	3 cut(s)	42, 78, 592
Bso31I	GGTCTC	1 cut(s)	745
BsoBI	CYCGRG	1 cut(s)	260
Bsp119I	TTCGAA	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp143I	GATC	3 cut(s)	391, 508, 771
BspACI	CCGC	2 cut(s)	289, 291
BspANI	GGCC	3 cut(s)	42, 78, 592
BspCNI	CTCAG	2 cut(s)	633, 736
BspFNI	CGCG	1 cut(s)	291
BspHI	TCATGA	2 cut(s)	343, 376
BspT104I	TTCGAA	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	745
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	3 cut(s)	391, 508, 771
BssNAI	GTATAC	1 cut(s)	615
Bst1107I	GTATAC	1 cut(s)	615
Bst4CI	ACNGT	2 cut(s)	155, 783
Bst6I	CTCTTC	2 cut(s)	27, 528
BstBI	TTCGAA	1 cut(s)	494
BstC8I	GCNNGC	2 cut(s)	200, 339
BstDEI	CTNAG	3 cut(s)	620, 653, 744
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	354
BstFNI	CGCG	1 cut(s)	291
BstHHI	GCGC	2 cut(s)	30, 167
BstKTI	GATC	3 cut(s)	394, 511, 774
BstMAI	GTCTC	3 cut(s)	270, 333, 745
BstMBI	GATC	3 cut(s)	391, 508, 771
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 485
BstNSI	RCATGY	2 cut(s)	202, 279
BstSFI	CTRYAG	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	663
BstUI	CGCG	1 cut(s)	291
BstV2I	GAAGAC	2 cut(s)	223, 426
BstZ17I	GTATAC	1 cut(s)	615
BsuRI	GGCC	3 cut(s)	42, 78, 592
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	354
Cac8I	GCNNGC	2 cut(s)	200, 339
CciI	TCATGA	2 cut(s)	343, 376
CfoI	GCGC	2 cut(s)	30, 167
Cfr42I	CCGCGG	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	56, 151
CviAII	CATG	5 cut(s)	199, 227, 276, 344, 377
CviQI	GTAC	2 cut(s)	56, 151
DdeI	CTNAG	3 cut(s)	620, 653, 744
DpnI	GATC	3 cut(s)	393, 510, 773
DpnII	GATC	3 cut(s)	391, 508, 771
DraIII	CACNNNGTG	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	2 cut(s)	27, 528
EarI	CTCTTC	2 cut(s)	27, 528
Eco147I	AGGCCT	2 cut(s)	78, 592
Eco31I	GGTCTC	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	260
EcoT22I	ATGCAT	1 cut(s)	248
FaeI	CATG	5 cut(s)	202, 230, 279, 347, 380
FaqI	GGGAC	2 cut(s)	264, 292
FatI	CATG	5 cut(s)	198, 226, 275, 343, 376
FblI	GTMKAC	1 cut(s)	614
Fnu4HI	GCNGC	1 cut(s)	289
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	3 cut(s)	594, 750, 756
FspI	TGCGCA	1 cut(s)	166
GlaI	GCGC	2 cut(s)	29, 166
GluI	GCNGC	1 cut(s)	289
HaeIII	GGCC	3 cut(s)	42, 78, 592
HapII	CCGG	2 cut(s)	39, 332
HhaI	GCGC	2 cut(s)	30, 167
Hin1II	CATG	5 cut(s)	202, 230, 279, 347, 380
Hin6I	GCGC	2 cut(s)	28, 165
HinP1I	GCGC	2 cut(s)	28, 165
HinfI	GANTC	3 cut(s)	263, 380, 746
HpaII	CCGG	2 cut(s)	39, 332
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	2 cut(s)	56, 615
Hpy188I	TCNGA	5 cut(s)	108, 407, 623, 669, 745
Hpy188III	TCNNGA	5 cut(s)	344, 377, 395, 702, 756
Hpy8I	GTNNAC	2 cut(s)	56, 615
HpyAV	CCTTC	4 cut(s)	68, 121, 365, 422
HpyCH4III	ACNGT	2 cut(s)	155, 783
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 485
HpyF3I	CTNAG	3 cut(s)	620, 653, 744
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	5 cut(s)	202, 230, 279, 347, 380
HspAI	GCGC	2 cut(s)	28, 165
KspI	CCGCGG	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	391, 508, 771
LpnPI	CCDG	7 cut(s)	52, 72, 345, 558, 642, 657, 747
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	3 cut(s)	594, 750, 756
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	561
MalI	GATC	3 cut(s)	393, 510, 773
MboI	GATC	3 cut(s)	391, 508, 771
MboII	GAAGA	8 cut(s)	14, 200, 223, 431, 446, 458, 545, 652
MhlI	GDGCHC	1 cut(s)	663
MluCI	AATT	6 cut(s)	168, 302, 363, 408, 472, 516
MlyI	GAGTC	3 cut(s)	272, 374, 755
MmeI	TCCRAC	2 cut(s)	131, 692
Mph1103I	ATGCAT	1 cut(s)	248
MseI	TTAA	2 cut(s)	212, 366
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	2 cut(s)	39, 332
Mva1269I	GAATGC	3 cut(s)	167, 248, 355
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	171, 485
NdeII	GATC	3 cut(s)	391, 508, 771
NlaIII	CATG	5 cut(s)	202, 230, 279, 347, 380
NmuCI	GTSAC	1 cut(s)	561
NsbI	TGCGCA	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	248
NspI	RCATGY	2 cut(s)	202, 279
NspV	TTCGAA	1 cut(s)	494
PaeI	GCATGC	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	260
PagI	TCATGA	2 cut(s)	343, 376
PceI	AGGCCT	2 cut(s)	78, 592
PciI	ACATGT	1 cut(s)	275
PctI	GAATGC	3 cut(s)	167, 248, 355
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	290
PleI	GAGTC	3 cut(s)	271, 374, 754
PpsI	GAGTC	3 cut(s)	271, 374, 754
PscI	ACATGT	1 cut(s)	275
PshBI	ATTAAT	1 cut(s)	366
PspXI	VCTCGAGB	1 cut(s)	260
RsaI	GTAC	2 cut(s)	57, 152
RsaNI	GTAC	2 cut(s)	56, 151
RseI	CAYNNNNRTG	1 cut(s)	348
SacII	CCGCGG	1 cut(s)	292
SaqAI	TTAA	2 cut(s)	212, 366
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	3 cut(s)	391, 508, 771
SchI	GAGTC	3 cut(s)	272, 374, 755
SduI	GDGCHC	1 cut(s)	663
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	582
Sfr274I	CTCGAG	1 cut(s)	260
Sfr303I	CCGCGG	1 cut(s)	292
SfuI	TTCGAA	1 cut(s)	494
SgrBI	CCGCGG	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SphI	GCATGC	1 cut(s)	202
Sse9I	AATT	6 cut(s)	168, 302, 363, 408, 472, 516
SseBI	AGGCCT	2 cut(s)	78, 592
SsiI	CCGC	2 cut(s)	289, 291
SspMI	CTAG	3 cut(s)	594, 750, 756
StuI	AGGCCT	2 cut(s)	78, 592
TaaI	ACNGT	2 cut(s)	155, 783
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	6 cut(s)	81, 249, 261, 494, 557, 569
TasI	AATT	6 cut(s)	168, 302, 363, 408, 472, 516
TauI	GCSGC	1 cut(s)	291
Tru1I	TTAA	2 cut(s)	212, 366
Tru9I	TTAA	2 cut(s)	212, 366
TseFI	GTSAC	1 cut(s)	561
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	5 cut(s)	103, 384, 414, 546, 555
TspGWI	ACGGA	1 cut(s)	560
Van91I	CCANNNNNTGG	1 cut(s)	49
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	1 cut(s)	472
XbaI	TCTAGA	1 cut(s)	755
XceI	RCATGY	2 cut(s)	202, 279
XhoI	CTCGAG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	614
XspI	CTAG	3 cut(s)	594, 750, 756
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.