Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0016563

Physical Location & Seq

Genomic Coordinates Forward (+)

3752778 .. 3754086

Gene Structure 1309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G033100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGCAGGGGATGTCAGCATCGACCACACCGGATGTAGCTTATCCCCCATCCTCACAGCATGTGGCCTCCCCGCCAATTACTGTCGTTCTGACCGTCCTTCTCCTCGTGTTCTTCTTTGTGGGATTCTTTTGTATTTACTTTTGCAAGTGTTTCATGGACCATATCCTTACCTCCTTTCAGCGCTCTCCCTCCGGAGACCTTGTGGGCACGGCGGTTGTACCTAAAGAAGGCCTTGACGTCTCACTCATAGAATCATTTCCAACTTTCGTGTATGCAAGCGTCAAAGATTATCGGATAGAGAAGTACGGCCTAGAATGCGCAATTTGCTTGGTGGAGTTCGAGGACGATAGCATGCTGCGCCTCTTGACAGCTTGTTGCCATGTTTTCCATCAAGAATGCATCGACCTCTGGCTCGAGTCTCACAAAACTTGTCCATTTTGTCGTGGAAATCTCGAATCAATACCCTCGAACTTAGCGGAGAAGTCTCCGGTGCTTGCTCACGAGAACGTCGCCATGCAGGAAATTCATGAAGGGAATGAGCCTGTGTTGTTGGATCCGAATGCTATCCACATTGACATCAAAGGTGAACAAGGCCAAGACCAACATCATCAAGGAACTAGTACTAGTGATTCGTGGCCTCCCAATAAAAATAATAACAATAACAATATGGTTGCAGAAGATGAACAAAGTAGTAGAACTAACCATGATCATCAAAACGTAGAGAATGAAACCGAAAGATTTTCGAGGTCACATTCGACAGGGCACTCCATAGTTATTAGGCCTAGAGCAGAGGAGGATAGATATACACTGAGATTGCCAGAGCATGTGAAGATAAAACTTCTAAGAGGGCATCATAACTGGACAGGAAGCTGTACCACATTTGGGGAGTTCTCACGCCAAACACACAATGCGGCTGGTGGCCACTTTGGAGAGGTCTCTGGCTCTGCTGCTGGAGGAGACATTAACAGACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

325

Amino Acids

36.14

Weight (kDa)

5.49

Isoelectric Point (pI)

56.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17920 AT5G46650
fragaria_vesca	FvH4_5g22380
malus_domestica	MD06G1036300.v1.1
prunus_persica	Prupe.5G033100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0210121
rosa_laevigata	RLG00000003063
rosa_multiflora	Rmu_sc0025548.1_g000001
rosa_rugosa	Rorug07G0118700
rosa_samantha	Rh7AG252200 Rh7BG247000 Rh7CG269200 Rh7DG259500
rosa_wichuraiana	Rw7G021430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
Acc16I	TGCGCA	1 cut(s)	319
AccIII	TCCGGA	1 cut(s)	191
AciI	CCGC	4 cut(s)	71, 212, 476, 911
AclWI	GGATC	2 cut(s)	548, 561
AcoI	YGGCCR	1 cut(s)	919
AcsI	RAATTY	1 cut(s)	522
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	4 cut(s)	219, 305, 622, 874
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	2 cut(s)	227, 882
AhlI	ACTAGT	2 cut(s)	617, 623
AluBI	AGCT	3 cut(s)	38, 371, 870
AluI	AGCT	3 cut(s)	38, 371, 870
Alw26I	GTCTC	6 cut(s)	189, 244, 423, 489, 940, 951
AlwI	GGATC	2 cut(s)	548, 561
Ama87I	CYCGRG	1 cut(s)	413
Aor13HI	TCCGGA	1 cut(s)	191
Aor51HI	AGCGCT	1 cut(s)	182
AoxI	GGCC	7 cut(s)	63, 229, 307, 592, 635, 779, 919
ApeKI	GCWGC	2 cut(s)	355, 947
ApoI	RAATTY	1 cut(s)	522
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	3 cut(s)	183, 320, 360
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	596
AvaI	CYCGRG	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	157
BaeGI	GKGCMC	2 cut(s)	209, 765
BalI	TGGCCA	1 cut(s)	921
BamHI	GGATCC	1 cut(s)	553
BauI	CACGAG	2 cut(s)	104, 500
BbvI	GCAGC	2 cut(s)	342, 934
BccI	CCATC	2 cut(s)	55, 396
BceAI	ACGGC	2 cut(s)	225, 322
BclI	TGATCA	1 cut(s)	706
BcoDI	GTCTC	6 cut(s)	189, 244, 423, 489, 940, 951
BcuI	ACTAGT	2 cut(s)	617, 623
BfaI	CTAG	4 cut(s)	311, 618, 624, 783
BfoI	RGCGCY	1 cut(s)	184
BisI	GCNGC	3 cut(s)	356, 912, 948
BlsI	GCNGC	3 cut(s)	357, 913, 949
BmcAI	AGTACT	1 cut(s)	622
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	555
BmsI	GCATC	3 cut(s)	26, 408, 859
BpmI	CTGGAG	1 cut(s)	972
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	2 cut(s)	189, 940
BsaWI	WCCGGW	3 cut(s)	28, 191, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 882
Bse1I	ACTGG	1 cut(s)	863
BseAI	TCCGGA	1 cut(s)	191
BseGI	GGATG	3 cut(s)	15, 37, 47
BseLI	CCNNNNNNNGG	2 cut(s)	227, 882
BseMII	CTCAG	1 cut(s)	800
BseNI	ACTGG	1 cut(s)	863
BseRI	GAGGAG	3 cut(s)	92, 806, 969
BseSI	GKGCMC	2 cut(s)	209, 765
BseXI	GCAGC	2 cut(s)	342, 934
BshFI	GGCC	7 cut(s)	65, 231, 309, 594, 637, 781, 921
BsiHKCI	CYCGRG	1 cut(s)	413
BsiSI	CCGG	3 cut(s)	29, 192, 488
BslI	CCNNNNNNNGG	2 cut(s)	227, 882
BsmAI	GTCTC	6 cut(s)	189, 244, 423, 489, 940, 951
BsmBI	CGTCTC	1 cut(s)	244
BsmI	GAATGC	3 cut(s)	320, 401, 565
BsnI	GGCC	7 cut(s)	65, 231, 309, 594, 637, 781, 921
Bso31I	GGTCTC	2 cut(s)	189, 940
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	2 cut(s)	209, 765
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	553, 706
BspACI	CCGC	4 cut(s)	71, 212, 476, 911
BspANI	GGCC	7 cut(s)	65, 231, 309, 594, 637, 781, 921
BspCNI	CTCAG	1 cut(s)	801
BspEI	TCCGGA	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	555
BspPI	GGATC	2 cut(s)	548, 561
BspTNI	GGTCTC	2 cut(s)	189, 940
BsrI	ACTGG	1 cut(s)	863
BssMI	GATC	2 cut(s)	553, 706
BssNI	GRCGYC	1 cut(s)	237
BssSI	CACGAG	2 cut(s)	104, 500
Bst2BI	CACGAG	2 cut(s)	104, 500
Bst4CI	ACNGT	2 cut(s)	82, 94
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	3 cut(s)	277, 353, 495
BstDEI	CTNAG	3 cut(s)	472, 809, 842
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	3 cut(s)	15, 37, 47
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	3 cut(s)	183, 320, 360
BstKTI	GATC	2 cut(s)	556, 709
BstMAI	GTCTC	6 cut(s)	189, 244, 423, 489, 940, 951
BstMBI	GATC	2 cut(s)	553, 706
BstMWI	GCNNNNNNNGC	3 cut(s)	315, 324, 357
BstNSI	RCATGY	3 cut(s)	62, 355, 827
BstSLI	GKGCMC	2 cut(s)	209, 765
BstV1I	GCAGC	2 cut(s)	342, 934
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	7 cut(s)	65, 231, 309, 594, 637, 781, 921
BtsCI	GGATG	3 cut(s)	15, 37, 47
BtsIMutI	CAGTG	1 cut(s)	806
Cac8I	GCNNGC	3 cut(s)	277, 353, 495
CciI	TCATGA	1 cut(s)	526
CfoI	GCGC	3 cut(s)	183, 320, 360
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	4 cut(s)	218, 304, 621, 873
CviAII	CATG	8 cut(s)	59, 154, 352, 380, 514, 527, 704, 824
CviQI	GTAC	4 cut(s)	218, 304, 621, 873
DdeI	CTNAG	3 cut(s)	472, 809, 842
DpnI	GATC	2 cut(s)	555, 708
DpnII	GATC	2 cut(s)	553, 706
EaeI	YGGCCR	1 cut(s)	919
Eco147I	AGGCCT	2 cut(s)	231, 781
Eco31I	GGTCTC	2 cut(s)	189, 940
Eco47I	GGWCC	1 cut(s)	157
Eco47III	AGCGCT	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	413
EcoNI	CCTNNNNNAGG	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	401
Esp3I	CGTCTC	1 cut(s)	244
FaeI	CATG	8 cut(s)	62, 157, 355, 383, 517, 530, 707, 827
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	8 cut(s)	58, 153, 351, 379, 513, 526, 703, 823
FauI	CCCGC	1 cut(s)	78
FbaI	TGATCA	1 cut(s)	706
Fnu4HI	GCNGC	3 cut(s)	356, 912, 948
FokI	GGATG	3 cut(s)	22, 34, 44
Fsp4HI	GCNGC	3 cut(s)	356, 912, 948
FspBI	CTAG	4 cut(s)	311, 618, 624, 783
FspI	TGCGCA	1 cut(s)	319
GlaI	GCGC	3 cut(s)	182, 319, 359
GluI	GCNGC	3 cut(s)	356, 912, 948
GsuI	CTGGAG	1 cut(s)	972
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	7 cut(s)	65, 231, 309, 594, 637, 781, 921
HapII	CCGG	3 cut(s)	29, 192, 488
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	3 cut(s)	183, 320, 360
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	8 cut(s)	62, 157, 355, 383, 517, 530, 707, 827
Hin6I	GCGC	3 cut(s)	181, 318, 358
HinP1I	GCGC	3 cut(s)	181, 318, 358
HinfI	GANTC	5 cut(s)	123, 251, 416, 455, 629
HpaII	CCGG	3 cut(s)	29, 192, 488
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	1 cut(s)	587
Hpy188I	TCNGA	3 cut(s)	90, 294, 558
Hpy188III	TCNNGA	6 cut(s)	192, 364, 392, 452, 500, 527
Hpy8I	GTNNAC	1 cut(s)	587
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	3 cut(s)	107, 221, 524
HpyCH4III	ACNGT	2 cut(s)	82, 94
HpyCH4IV	ACGT	3 cut(s)	237, 507, 717
HpyCH4V	TGCA	6 cut(s)	4, 144, 275, 399, 517, 674
HpyF10VI	GCNNNNNNNGC	3 cut(s)	315, 324, 357
HpyF3I	CTNAG	3 cut(s)	472, 809, 842
HpySE526I	ACGT	3 cut(s)	237, 507, 717
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	8 cut(s)	62, 157, 355, 383, 517, 530, 707, 827
HspAI	GCGC	3 cut(s)	181, 318, 358
Kpn2I	TCCGGA	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	706
Kzo9I	GATC	2 cut(s)	553, 706
Lsp1109I	GCAGC	2 cut(s)	342, 934
LweI	GCATC	3 cut(s)	26, 408, 859
MaeI	CTAG	4 cut(s)	311, 618, 624, 783
MaeII	ACGT	3 cut(s)	237, 507, 717
MaeIII	GTNAC	1 cut(s)	747
MalI	GATC	2 cut(s)	555, 708
MboI	GATC	2 cut(s)	553, 706
MboII	GAAGA	3 cut(s)	103, 689, 841
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	2 cut(s)	209, 765
MlsI	TGGCCA	1 cut(s)	921
MluCI	AATT	3 cut(s)	75, 321, 522
MluNI	TGGCCA	1 cut(s)	921
MlyI	GAGTC	1 cut(s)	425
MmeI	TCCRAC	2 cut(s)	284, 531
Mox20I	TGGCCA	1 cut(s)	921
Mph1103I	ATGCAT	1 cut(s)	401
MroI	TCCGGA	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	921
MseI	TTAA	2 cut(s)	963, 973
Msp20I	TGGCCA	1 cut(s)	921
MspI	CCGG	3 cut(s)	29, 192, 488
Mva1269I	GAATGC	3 cut(s)	320, 401, 565
MwoI	GCNNNNNNNGC	3 cut(s)	315, 324, 357
NdeII	GATC	2 cut(s)	553, 706
NlaIII	CATG	8 cut(s)	62, 157, 355, 383, 517, 530, 707, 827
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	1 cut(s)	747
NsbI	TGCGCA	1 cut(s)	319
NsiI	ATGCAT	1 cut(s)	401
NspI	RCATGY	3 cut(s)	62, 355, 827
PaeI	GCATGC	1 cut(s)	355
PaeR7I	CTCGAG	1 cut(s)	413
PagI	TCATGA	1 cut(s)	526
PceI	AGGCCT	2 cut(s)	231, 781
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PctI	GAATGC	3 cut(s)	320, 401, 565
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	4 cut(s)	123, 251, 455, 629
PkrI	GCNGC	3 cut(s)	357, 913, 949
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	1 cut(s)	157
PspXI	VCTCGAGB	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	553
RsaI	GTAC	4 cut(s)	219, 305, 622, 874
RsaNI	GTAC	4 cut(s)	218, 304, 621, 873
SaqAI	TTAA	2 cut(s)	963, 973
SatI	GCNGC	3 cut(s)	356, 912, 948
Sau3AI	GATC	2 cut(s)	553, 706
Sau96I	GGNCC	1 cut(s)	157
ScaI	AGTACT	1 cut(s)	622
SchI	GAGTC	1 cut(s)	425
SduI	GDGCHC	2 cut(s)	209, 765
SfaNI	GCATC	3 cut(s)	26, 408, 859
Sfr274I	CTCGAG	1 cut(s)	413
SinI	GGWCC	1 cut(s)	157
SlaI	CTCGAG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SpeI	ACTAGT	2 cut(s)	617, 623
SphI	GCATGC	1 cut(s)	355
Sse9I	AATT	3 cut(s)	75, 321, 522
SseBI	AGGCCT	2 cut(s)	231, 781
SsiI	CCGC	4 cut(s)	71, 212, 476, 911
SspMI	CTAG	4 cut(s)	311, 618, 624, 783
StuI	AGGCCT	2 cut(s)	231, 781
TaaI	ACNGT	2 cut(s)	82, 94
TaiI	ACGT	3 cut(s)	240, 510, 720
TaqI	TCGA	8 cut(s)	20, 339, 402, 414, 453, 467, 743, 755
TasI	AATT	3 cut(s)	75, 321, 522
TatI	WGTACW	1 cut(s)	620
TauI	GCSGC	1 cut(s)	914
TfiI	GAWTC	4 cut(s)	123, 251, 455, 629
Tru1I	TTAA	2 cut(s)	963, 973
Tru9I	TTAA	2 cut(s)	963, 973
TscAI	CASTG	1 cut(s)	813
TseFI	GTSAC	1 cut(s)	747
TseI	GCWGC	2 cut(s)	355, 947
Tsp45I	GTSAC	1 cut(s)	747
TspDTI	ATGAA	5 cut(s)	142, 515, 543, 696, 741
TspRI	CASTG	1 cut(s)	813
VpaK11BI	GGWCC	1 cut(s)	157
XagI	CCTNNNNNAGG	1 cut(s)	225
XapI	RAATTY	1 cut(s)	522
XceI	RCATGY	3 cut(s)	62, 355, 827
XhoI	CTCGAG	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	4 cut(s)	311, 618, 624, 783
ZraI	GACGTC	1 cut(s)	238
ZrmI	AGTACT	1 cut(s)	622
Zsp2I	ATGCAT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.