Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016563

Physical Location & Seq

Genomic Coordinates Reverse (-)

27744422 .. 27745351

Gene Structure 930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18802

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCTGGGAATGTCAACGAATTTTAATAGTTACCCTCCACAGGAAAATATCAGTTCCTCTCCATCGATCACCGTCCTTTTGACCGTCCTCCTCCTCGTCTTCTTCTTTATTGGTTTCTTTTCTATTTACTTTTGCAAGTGTTTCGTGGAAAACGTCCTCACGTCTTTTCAGCGCACACCCTCCGGCGACCTTGTGGGCGTACCTGTTCCTCCCAAAGAAGGCCTCGACCTCTCTCTAATACAATCATTTCCCACCTTCATCTACGCAAGTGTCAAAGATTTTCGCATAGAGAAGTACGGTTTAGAATGCGCAATTTGCTTATTGGAGTTTGAGGATGATAGCATGCTACGTCTTTTAACAGCTTGTTGCCATGTCTTCCACCAAGAATGCATCGACCTGTGGCTCGAGTCTCACAAAACATGTCCCTTTTGCCGTGGAAACCTTGAATTGTCGCCAACAATAATGGACAAGTCTCCGGTGCTTGCTCATGAGAATGCCATGCACGAAATTAATGAAGGTGAAGAGTCCATATACGGTCAAGATGCTATCCGAATTGACATTAAAGACAAAGACGAAGACGAAGAAGGCCGAGAAGGATATCGTAGTGCTCATCAACAAAATTTGGCTGCTAATGTAAATTCTAACGTGGAAGGCCAACAAATTGATGGACAAAATGAAGAGAACGAAACGGAAAGATTTTCGAGGTCACACTCGACAGGACACTCCATAGTTAGGCCTAGACAAGAGGAGGATAGGTATACACTCAGATTACCGGAGCATGTGAAGATAAAACTTCTTAGAGGGCACAATTGGACAGGAAGTTGTACTACATTTGGGGAGTTTTCACGACAAAGAGGCAGTTGTAAAGGTGGCTTTGGAGAGGTCTCAGAATCTAGCTCTGCTGGTGGAGAGATTAGTAGCAAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

309

Amino Acids

34.77

Weight (kDa)

5.02

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	102 - 145	1.3e-13	Ring finger domain
zf-C3HC4_2	PF13923	102 - 144	8.9e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	102 - 131	9.7e-09	RING-like zinc finger
zf-rbx1	PF12678	106 - 145	8.3e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17920 AT5G46650
fragaria_vesca	FvH4_5g22380
malus_domestica	MD06G1036300.v1.1
prunus_persica	Prupe.5G033100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0210121
rosa_laevigata	RLG00000003063
rosa_multiflora	Rmu_sc0025548.1_g000001
rosa_rugosa	Rorug07G0118700
rosa_samantha	Rh7AG252200 Rh7BG247000 Rh7CG269200 Rh7DG259500
rosa_wichuraiana	Rw7G021430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	758
AcsI	RAATTY	3 cut(s)	19, 619, 637
AfaI	GTAC	3 cut(s)	201, 296, 826
AfiI	CCNNNNNNNGG	3 cut(s)	40, 218, 732
AflIII	ACRYGT	1 cut(s)	419
AgsI	TTSAA	1 cut(s)	446
AjiI	CACGTC	1 cut(s)	162
AluBI	AGCT	2 cut(s)	362, 897
AluI	AGCT	2 cut(s)	362, 897
Alw21I	GWGCWC	1 cut(s)	610
Alw26I	GTCTC	3 cut(s)	414, 477, 889
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	4 cut(s)	220, 586, 652, 734
ApeKI	GCWGC	1 cut(s)	626
ApoI	RAATTY	3 cut(s)	19, 619, 637
AseI	ATTAAT	1 cut(s)	510
AspLEI	GCGC	2 cut(s)	174, 311
AsuHPI	GGTGA	2 cut(s)	61, 530
AvaI	CYCGRG	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	807
BarI	GAAGNNNNNNTAC	2 cut(s)	811, 843
BbsI	GAAGAC	3 cut(s)	91, 367, 582
Bbv12I	GWGCWC	1 cut(s)	610
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	2 cut(s)	70, 659
BceAI	ACGGC	1 cut(s)	417
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BcoDI	GTCTC	3 cut(s)	414, 477, 889
BfaI	CTAG	2 cut(s)	738, 894
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
BmeT110I	CYCGRG	1 cut(s)	404
BmgBI	CACGTC	1 cut(s)	162
BmsI	GCATC	2 cut(s)	399, 532
BpiI	GAAGAC	3 cut(s)	91, 367, 582
Bsa29I	ATCGAT	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	889
BsaJI	CCNNGG	1 cut(s)	433
BsaWI	WCCGGW	2 cut(s)	475, 772
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 218, 732
BseCI	ATCGAT	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	3 cut(s)	40, 218, 732
BseMII	CTCAG	2 cut(s)	778, 900
BseRI	GAGGAG	3 cut(s)	80, 83, 761
BseSI	GKGCMC	1 cut(s)	807
BseXI	GCAGC	1 cut(s)	613
BseYI	CCCAGC	1 cut(s)	4
BshFI	GGCC	4 cut(s)	222, 588, 654, 736
BshVI	ATCGAT	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	610
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	3 cut(s)	183, 476, 773
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	3 cut(s)	40, 218, 732
BsmAI	GTCTC	3 cut(s)	414, 477, 889
BsmFI	GGGAC	1 cut(s)	408
BsmI	GAATGC	3 cut(s)	311, 392, 499
BsnI	GGCC	4 cut(s)	222, 588, 654, 736
Bso31I	GGTCTC	1 cut(s)	889
BsoBI	CYCGRG	1 cut(s)	404
Bsp1286I	GDGCHC	2 cut(s)	610, 807
Bsp143I	GATC	1 cut(s)	66
BspANI	GGCC	4 cut(s)	222, 588, 654, 736
BspCNI	CTCAG	2 cut(s)	777, 899
BspDI	ATCGAT	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	889
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	1 cut(s)	66
BssNAI	GTATAC	1 cut(s)	759
Bst1107I	GTATAC	1 cut(s)	759
Bst4CI	ACNGT	5 cut(s)	73, 85, 299, 536, 927
Bst6I	CTCTTC	2 cut(s)	516, 672
BstC8I	GCNNGC	2 cut(s)	344, 483
BstDEI	CTNAG	3 cut(s)	764, 797, 886
BstDSI	CCRYGG	1 cut(s)	433
BstF5I	GGATG	1 cut(s)	340
BstHHI	GCGC	2 cut(s)	174, 311
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	3 cut(s)	414, 477, 889
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNSI	RCATGY	3 cut(s)	346, 423, 782
BstSLI	GKGCMC	1 cut(s)	807
BstV1I	GCAGC	1 cut(s)	613
BstV2I	GAAGAC	3 cut(s)	91, 367, 582
BstZ17I	GTATAC	1 cut(s)	759
Bsu15I	ATCGAT	1 cut(s)	65
BsuRI	GGCC	4 cut(s)	222, 588, 654, 736
BsuTUI	ATCGAT	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	433
BtrI	CACGTC	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	344, 483
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	2 cut(s)	174, 311
ClaI	ATCGAT	1 cut(s)	65
Csp6I	GTAC	3 cut(s)	200, 295, 825
CviAII	CATG	6 cut(s)	343, 371, 420, 488, 499, 779
CviJI	RGCY	9 cut(s)	222, 362, 403, 588, 626, 654, 736, 873, 897
CviKI_1	RGCY	9 cut(s)	222, 362, 403, 588, 626, 654, 736, 873, 897
CviQI	GTAC	3 cut(s)	200, 295, 825
DdeI	CTNAG	3 cut(s)	764, 797, 886
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	516, 672
EarI	CTCTTC	2 cut(s)	516, 672
Eco147I	AGGCCT	2 cut(s)	222, 736
Eco31I	GGTCTC	1 cut(s)	889
Eco32I	GATATC	1 cut(s)	599
Eco88I	CYCGRG	1 cut(s)	404
EcoRV	GATATC	1 cut(s)	599
EcoT22I	ATGCAT	1 cut(s)	392
FaeI	CATG	6 cut(s)	346, 374, 423, 491, 502, 782
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	6 cut(s)	342, 370, 419, 487, 498, 778
FblI	GTMKAC	1 cut(s)	758
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	2 cut(s)	738, 894
FspI	TGCGCA	1 cut(s)	310
GlaI	GCGC	2 cut(s)	173, 310
GluI	GCNGC	1 cut(s)	627
GsaI	CCCAGC	1 cut(s)	8
HaeIII	GGCC	4 cut(s)	222, 588, 654, 736
HapII	CCGG	3 cut(s)	183, 476, 773
HhaI	GCGC	2 cut(s)	174, 311
Hin1II	CATG	6 cut(s)	346, 374, 423, 491, 502, 782
Hin6I	GCGC	2 cut(s)	172, 309
HinP1I	GCGC	2 cut(s)	172, 309
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	3 cut(s)	407, 524, 890
HpaII	CCGG	3 cut(s)	183, 476, 773
HphI	GGTGA	2 cut(s)	61, 530
Hpy166II	GTNNAC	2 cut(s)	15, 759
Hpy188I	TCNGA	3 cut(s)	551, 767, 889
Hpy188III	TCNNGA	3 cut(s)	488, 539, 846
Hpy8I	GTNNAC	2 cut(s)	15, 759
HpyAV	CCTTC	6 cut(s)	212, 265, 509, 578, 587, 644
HpyCH4III	ACNGT	5 cut(s)	73, 85, 299, 536, 927
HpyCH4IV	ACGT	4 cut(s)	153, 161, 349, 645
HpyCH4V	TGCA	3 cut(s)	135, 390, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	3 cut(s)	764, 797, 886
HpySE526I	ACGT	4 cut(s)	153, 161, 349, 645
Hsp92II	CATG	6 cut(s)	346, 374, 423, 491, 502, 782
HspAI	GCGC	2 cut(s)	172, 309
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	775
LpnPI	CCDG	9 cut(s)	26, 196, 216, 410, 489, 702, 786, 801, 888
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	2 cut(s)	399, 532
MaeI	CTAG	2 cut(s)	738, 894
MaeII	ACGT	4 cut(s)	153, 161, 349, 645
MaeIII	GTNAC	2 cut(s)	29, 705
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	8 cut(s)	91, 94, 367, 533, 587, 593, 689, 796
MfeI	CAATTG	1 cut(s)	808
MhlI	GDGCHC	2 cut(s)	610, 807
MluCI	AATT	9 cut(s)	19, 312, 446, 507, 552, 619, 637, 660, 808
MlyI	GAGTC	2 cut(s)	416, 533
Mph1103I	ATGCAT	1 cut(s)	392
MseI	TTAA	4 cut(s)	24, 356, 510, 561
MslI	CAYNNNNRTG	1 cut(s)	492
MspI	CCGG	3 cut(s)	183, 476, 773
MunI	CAATTG	1 cut(s)	808
Mva1269I	GAATGC	3 cut(s)	311, 392, 499
MwoI	GCNNNNNNNGC	1 cut(s)	315
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	6 cut(s)	346, 374, 423, 491, 502, 782
NmeAIII	GCCGAG	1 cut(s)	614
NmuCI	GTSAC	1 cut(s)	705
NsbI	TGCGCA	1 cut(s)	310
NsiI	ATGCAT	1 cut(s)	392
NspI	RCATGY	3 cut(s)	346, 423, 782
PaeI	GCATGC	1 cut(s)	346
PaeR7I	CTCGAG	1 cut(s)	404
PagI	TCATGA	1 cut(s)	487
PceI	AGGCCT	2 cut(s)	222, 736
PciI	ACATGT	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	3 cut(s)	311, 392, 499
PfeI	GAWTC	1 cut(s)	890
PkrI	GCNGC	1 cut(s)	628
PleI	GAGTC	2 cut(s)	415, 532
PpsI	GAGTC	2 cut(s)	415, 532
PscI	ACATGT	1 cut(s)	419
PshBI	ATTAAT	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	4
PspXI	VCTCGAGB	1 cut(s)	404
RsaI	GTAC	3 cut(s)	201, 296, 826
RsaNI	GTAC	3 cut(s)	200, 295, 825
RseI	CAYNNNNRTG	1 cut(s)	492
SaqAI	TTAA	4 cut(s)	24, 356, 510, 561
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	1 cut(s)	66
SchI	GAGTC	2 cut(s)	416, 533
SduI	GDGCHC	2 cut(s)	610, 807
SfaNI	GCATC	2 cut(s)	399, 532
Sfr274I	CTCGAG	1 cut(s)	404
SlaI	CTCGAG	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
SphI	GCATGC	1 cut(s)	346
Sse9I	AATT	9 cut(s)	19, 312, 446, 507, 552, 619, 637, 660, 808
SseBI	AGGCCT	2 cut(s)	222, 736
SspMI	CTAG	2 cut(s)	738, 894
StuI	AGGCCT	2 cut(s)	222, 736
TaaI	ACNGT	5 cut(s)	73, 85, 299, 536, 927
TaiI	ACGT	4 cut(s)	156, 164, 352, 648
TaqI	TCGA	6 cut(s)	65, 225, 393, 405, 701, 713
TasI	AATT	9 cut(s)	19, 312, 446, 507, 552, 619, 637, 660, 808
TatI	WGTACW	1 cut(s)	824
TfiI	GAWTC	1 cut(s)	890
Tru1I	TTAA	4 cut(s)	24, 356, 510, 561
Tru9I	TTAA	4 cut(s)	24, 356, 510, 561
TseFI	GTSAC	1 cut(s)	705
TseI	GCWGC	1 cut(s)	626
Tsp45I	GTSAC	1 cut(s)	705
TspDTI	ATGAA	3 cut(s)	247, 528, 690
TspGWI	ACGGA	1 cut(s)	704
VspI	ATTAAT	1 cut(s)	510
XapI	RAATTY	3 cut(s)	19, 619, 637
XceI	RCATGY	3 cut(s)	346, 423, 782
XcmI	CCANNNNNNNNNTGG	1 cut(s)	662
XhoI	CTCGAG	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	758
XspI	CTAG	2 cut(s)	738, 894
Zsp2I	ATGCAT	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.