AT4G18260

Cytochrome b561

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011768
Physical Location & Seq
Reverse (-)
10095658 .. 10097337
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18260.1

Sequence Viewer

Length: 855 bp
ATGAAAATCTCCAAATCTCTCTGGAGTGTTATGATTTCTATTCTCTTCTATCTTACTTCTGCTCCACCATTTGTGATTTGCTCATCTCTTGAAGTCACCATTGATAACCATTCACCAAGCAATCTCAAGACTAAAGGATCCCTAGAACAAGATAAGTTGAGTCATCAAATGATAAATAGCATAAAGCTTCATGGCATTCTCTTATGGGTTTCCATGGGCTTTCTTATGCCAGTGGGGATTCTCTTCATTAGAATGGCCAATAAAGCTCATGAAAATGGAATAAAAGTTAAAGTGTTCTTCTACCTTCATGTCATTTTCCAGATACTGGCAGTAGTTTTAGCAACAATAGGAGCTATACTGTCTTTAAGAACATTGGAGAACTCTTTTGACAACAACCATCAAAGACTTGGTTTGGCTCTTTATGCTGCCATGTGGCTCCAATTCTTGACCGGTGTCTTCAAGCCCTCAAGAGGGAGCAAAAGGAGGTTAAGATGGTTCTTATTGCATTGGATACTTGGAACAATAGTGTCAATAGTTGGCATAGTAAACATATACACAGGCATACAAGCTTATCAAAAGAAGACATCATTAAGTAGAGACTCAAGTCTTTGGACAATCTTGTTCACAGTTCAAGTCACTTGTCTTGTCTTCTTCTATCTATATCAAGACAAATGGGAACATTTTCAAAAGCAAAGAGTTGTTCTTGACGAATTGGATCATCAAAATAATAACACAAATGGAAGAAATAACCAAAGCATCCAAGTGGTAACGAGAAATGATCATGAACAAAAGGTCATGGTTCCTCAGCCTTGTCGCAAAAGTAATGCACTTGTGAATCTGTTTAAATTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

284

Amino Acids

32.65

Weight (kDa)

9.91

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 63 - 189 2.1e-08 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18260
fragaria_vesca FvH4_3g05770 FvH4_3g05770
malus_domestica MD05G1285600.v1.1 MD10G1263600.v1.1
prunus_persica Prupe.4G079100_v2.0.a1
pyrus_communis pycom05g26460 pycom10g21980
rosa_chinensis RchiOBHm_Chr5g0013761
rosa_laevigata RLG00000032044
rosa_multiflora Rmu_co8478607.1_g000001 Rmu_ssc0000256.1_g000002
rosa_roxburghii Rroxscaffold_1G00062880
rosa_rugosa Rorug05G0012700
rosa_samantha Rh5AG107000 Rh5BG103100 Rh5CG114900 Rh5DG101800
rosa_wichuraiana Rw5G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 325
AclWI GGATC 3 cut(s) 132, 145, 723
AcoI YGGCCR 1 cut(s) 255
AfiI CCNNNNNNNGG 3 cut(s) 325, 470, 471
AgeI ACCGGT 1 cut(s) 449
AgsI TTSAA 4 cut(s) 92, 460, 632, 686
AluBI AGCT 4 cut(s) 187, 266, 353, 569
AluI AGCT 4 cut(s) 187, 266, 353, 569
Alw26I GTCTC 1 cut(s) 591
AlwI GGATC 3 cut(s) 132, 145, 723
AlwNI CAGNNNCTG 1 cut(s) 325
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 425
AsiGI ACCGGT 1 cut(s) 449
Asp700I GAANNNNTTC 1 cut(s) 681
AsuHPI GGTGA 2 cut(s) 88, 105
BalI TGGCCA 1 cut(s) 257
BamHI GGATCC 1 cut(s) 137
BbsI GAAGAC 3 cut(s) 448, 587, 640
BbvCI CCTCAGC 1 cut(s) 804
BbvI GCAGC 1 cut(s) 412
BccI CCATC 2 cut(s) 405, 486
BciVI GTATCC 1 cut(s) 504
BclI TGATCA 1 cut(s) 778
BcoDI GTCTC 1 cut(s) 591
BfaI CTAG 1 cut(s) 143
BfuI GTATCC 1 cut(s) 504
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
BmiI GGNNCC 3 cut(s) 139, 437, 801
BmsI GCATC 1 cut(s) 765
BoxI GACNNNNGTC 2 cut(s) 452, 603
BpiI GAAGAC 3 cut(s) 448, 587, 640
BpmI CTGGAG 1 cut(s) 43
Bpu10I CCTNAGC 1 cut(s) 804
BpuEI CTTGAG 3 cut(s) 110, 451, 586
BsaJI CCNNGG 1 cut(s) 213
BsaWI WCCGGW 1 cut(s) 449
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 470, 471
Bse118I RCCGGY 1 cut(s) 449
Bse1I ACTGG 2 cut(s) 230, 330
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 756
BseLI CCNNNNNNNGG 3 cut(s) 325, 470, 471
BseMII CTCAG 1 cut(s) 818
BseNI ACTGG 2 cut(s) 230, 330
BseXI GCAGC 1 cut(s) 412
BshFI GGCC 1 cut(s) 257
BshTI ACCGGT 1 cut(s) 449
BsiSI CCGG 1 cut(s) 450
BslI CCNNNNNNNGG 3 cut(s) 325, 470, 471
BsmAI GTCTC 1 cut(s) 591
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 1 cut(s) 257
Bsp143I GATC 3 cut(s) 137, 715, 778
Bsp19I CCATGG 1 cut(s) 213
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 817
BspHI TCATGA 2 cut(s) 268, 781
BspLI GGNNCC 3 cut(s) 139, 437, 801
BspPI GGATC 3 cut(s) 132, 145, 723
BsrFI RCCGGY 1 cut(s) 449
BsrI ACTGG 2 cut(s) 230, 330
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 3 cut(s) 137, 715, 778
BssT1I CCWWGG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 360, 628
Bst6I CTCTTC 2 cut(s) 50, 248
BstDEI CTNAG 1 cut(s) 804
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 756
BstKTI GATC 3 cut(s) 140, 718, 781
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 3 cut(s) 137, 715, 778
BstMWI GCNNNNNNNGC 2 cut(s) 263, 422
BstPAI GACNNNNGTC 2 cut(s) 452, 603
BstV1I GCAGC 1 cut(s) 412
BstV2I GAAGAC 3 cut(s) 448, 587, 640
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 756
BtsIMutI CAGTG 1 cut(s) 237
CaiI CAGNNNCTG 1 cut(s) 325
CciI TCATGA 2 cut(s) 268, 781
Cfr10I RCCGGY 1 cut(s) 449
CspAI ACCGGT 1 cut(s) 449
CviAII CATG 7 cut(s) 191, 214, 269, 308, 430, 782, 796
DdeI CTNAG 1 cut(s) 804
DpnI GATC 3 cut(s) 139, 717, 780
DpnII GATC 3 cut(s) 137, 715, 778
DraI TTTAAA 1 cut(s) 844
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 50, 248
EarI CTCTTC 2 cut(s) 50, 248
Eco130I CCWWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 7 cut(s) 194, 217, 272, 311, 433, 785, 799
FatI CATG 7 cut(s) 190, 213, 268, 307, 429, 781, 795
FbaI TGATCA 1 cut(s) 778
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 1 cut(s) 743
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 1 cut(s) 143
GluI GCNGC 1 cut(s) 426
GsuI CTGGAG 1 cut(s) 43
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 450
Hin1II CATG 7 cut(s) 194, 217, 272, 311, 433, 785, 799
HindIII AAGCTT 2 cut(s) 185, 567
HinfI GANTC 4 cut(s) 160, 238, 599, 835
HpaII CCGG 1 cut(s) 450
HphI GGTGA 2 cut(s) 88, 105
Hpy166II GTNNAC 2 cut(s) 547, 624
Hpy8I GTNNAC 2 cut(s) 547, 624
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 2 cut(s) 360, 628
HpyCH4V TGCA 2 cut(s) 505, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 422
HpyF3I CTNAG 1 cut(s) 804
Hsp92II CATG 7 cut(s) 194, 217, 272, 311, 433, 785, 799
Ksp22I TGATCA 1 cut(s) 778
Kzo9I GATC 3 cut(s) 137, 715, 778
LmnI GCTCC 4 cut(s) 67, 350, 441, 474
LpnPI CCDG 6 cut(s) 7, 243, 311, 332, 463, 543
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 1 cut(s) 765
MaeI CTAG 1 cut(s) 143
MaeIII GTNAC 3 cut(s) 94, 634, 766
MalI GATC 3 cut(s) 139, 717, 780
MboI GATC 3 cut(s) 137, 715, 778
MboII GAAGA 8 cut(s) 37, 235, 289, 448, 592, 640, 643, 753
MflI RGATCY 1 cut(s) 137
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 3 cut(s) 440, 710, 845
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 2 cut(s) 169, 593
MnlI CCTC 4 cut(s) 464, 475, 477, 813
Mox20I TGGCCA 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 681
MscI TGGCCA 1 cut(s) 257
MseI TTAA 5 cut(s) 288, 365, 488, 590, 843
MslI CAYNNNNRTG 3 cut(s) 251, 273, 761
Msp20I TGGCCA 1 cut(s) 257
MspI CCGG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 263, 422
NcoI CCATGG 1 cut(s) 213
NdeII GATC 3 cut(s) 137, 715, 778
NlaIII CATG 7 cut(s) 194, 217, 272, 311, 433, 785, 799
NlaIV GGNNCC 3 cut(s) 139, 437, 801
NmuCI GTSAC 2 cut(s) 94, 634
PagI TCATGA 2 cut(s) 268, 781
PctI GAATGC 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 681
PfeI GAWTC 2 cut(s) 238, 835
PflMI CCANNNNNTGG 1 cut(s) 325
PinAI ACCGGT 1 cut(s) 449
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 2 cut(s) 168, 593
PpsI GAGTC 2 cut(s) 168, 593
PshAI GACNNNNGTC 2 cut(s) 452, 603
PspN4I GGNNCC 3 cut(s) 139, 437, 801
PstNI CAGNNNCTG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 137
RseI CAYNNNNRTG 3 cut(s) 251, 273, 761
SaqAI TTAA 5 cut(s) 288, 365, 488, 590, 843
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 3 cut(s) 137, 715, 778
SchI GAGTC 2 cut(s) 169, 593
SetI ASST 7 cut(s) 189, 268, 306, 355, 488, 571, 795
SfaNI GCATC 1 cut(s) 765
SmiMI CAYNNNNRTG 3 cut(s) 251, 273, 761
SmlI CTYRAG 3 cut(s) 125, 466, 601
SmoI CTYRAG 3 cut(s) 125, 466, 601
Sse9I AATT 3 cut(s) 440, 710, 845
SspMI CTAG 1 cut(s) 143
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 360, 628
TasI AATT 3 cut(s) 440, 710, 845
TfiI GAWTC 2 cut(s) 238, 835
Tru1I TTAA 5 cut(s) 288, 365, 488, 590, 843
Tru9I TTAA 5 cut(s) 288, 365, 488, 590, 843
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 2 cut(s) 94, 634
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 2 cut(s) 94, 634
TspDTI ATGAA 6 cut(s) 17, 179, 235, 285, 296, 798
TspRI CASTG 1 cut(s) 237
Van91I CCANNNNNTGG 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
XmnI GAANNNNTTC 1 cut(s) 681
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.