RLG00000032044

Eukaryotic cytochrome b561

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011768
Physical Location & Seq
Reverse (-)
10398284 .. 10399859
1576 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032044

Sequence Viewer

Length: 819 bp
ATGCAAATCACTTATCTCAAACAAGCATCTTTAACTATTTCTGCATATTATCTTCTTCTTCTTCTGCCATTGGTTGTTTGCTCATCTCATGAAGATCATCAAATCAACCCCAGCAGCAGTCACAAAAGCATTAAAGACAACTTTCACAAGTTGAGTCCTCAGATGACATTTAATGTTACAGTTCATGGACTCCTCTTATGGTTTTCAGTGGGGTTCTTAATGCCTGCCGGAATACTTGTTATCAGAATGTCTGTTAGAGAAGAACAAGGAACAACAAGGGCCAAAGTTCTCTTCTATTTCCATGTAATTTTCCAGATACTGTCGGTGCTTCTTGCCACAGCTGGAGCTGTGATGTCCATCAAAAACTTTGAGAACTCATTCAATAACAACCACCAAAGATTAGGCCTAGCACTCTATGTTGCCATCTGGGTTCAAGCCTTGATTGGTTTATTCAGGCCTCACAGGGGAAAGAAGGAAAGAAGTGTGTGGTACTTAGTGCATTGGATGCTTGGAACAGTGATATCATTAGTGGGGATCATTAACATATACACGGGCTTAAATGCGTACCACAAGAGAACAAAGAGAAGCTCAGCGCTTTGGACTATCCTTTTCACAGCAGAGTTGTCTGTCATTGCTGTTTACTATCTATTCCAAGATAAAAGAGATTACATACAAAAGCAAGGAGTGGTTTTAGGCAATGATCTTAGTCAGGCAATCAGGCAATTAGATCAAGAACTAGCTCAAAGGCAGAACCAAAAGGAGTTGTTGCCTCTGCAACCATGTGGCAAACAAAATGCACTCAAGAACTTGTTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

273

Amino Acids

31.09

Weight (kDa)

9.74

Isoelectric Point (pI)

43.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 61 - 187 1.3e-10 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18260
fragaria_vesca FvH4_3g05770 FvH4_3g05770
malus_domestica MD05G1285600.v1.1 MD10G1263600.v1.1
prunus_persica Prupe.4G079100_v2.0.a1
pyrus_communis pycom05g26460 pycom10g21980
rosa_chinensis RchiOBHm_Chr5g0013761
rosa_laevigata RLG00000032044
rosa_multiflora Rmu_co8478607.1_g000001 Rmu_ssc0000256.1_g000002
rosa_roxburghii Rroxscaffold_1G00062880
rosa_rugosa Rorug05G0012700
rosa_samantha Rh5AG107000 Rh5BG103100 Rh5CG114900 Rh5DG101800
rosa_wichuraiana Rw5G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 542
AfaI GTAC 2 cut(s) 491, 566
AfeI AGCGCT 1 cut(s) 594
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 2 cut(s) 382, 434
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 4 cut(s) 341, 347, 588, 740
AluI AGCT 4 cut(s) 341, 347, 588, 740
AlwI GGATC 1 cut(s) 542
AlwNI CAGNNNCTG 1 cut(s) 319
Aor51HI AGCGCT 1 cut(s) 594
AoxI GGCC 3 cut(s) 279, 403, 455
ApeKI GCWGC 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 377
AspLEI GCGC 1 cut(s) 595
AspS9I GGNCC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 126
BccI CCATC 2 cut(s) 365, 431
BfaI CTAG 3 cut(s) 407, 737, 817
BfoI RGCGCY 1 cut(s) 596
BisI GCNGC 1 cut(s) 115
BlpI GCTNAGC 1 cut(s) 589
BlsI GCNGC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 279
BmsI GCATC 2 cut(s) 35, 495
BpmI CTGGAG 1 cut(s) 363
Bpu1102I GCTNAGC 1 cut(s) 589
BpuEI CTTGAG 1 cut(s) 785
BsaBI GATNNNNATC 1 cut(s) 356
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse3DI GCAATG 2 cut(s) 630, 703
Bse8I GATNNNNATC 1 cut(s) 356
BseGI GGATG 1 cut(s) 510
BseJI GATNNNNATC 1 cut(s) 356
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMI GCAATG 2 cut(s) 630, 703
BseMII CTCAG 2 cut(s) 173, 603
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 126
BseYI CCCAGC 1 cut(s) 110
BshFI GGCC 3 cut(s) 281, 405, 457
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 464
BsnI GGCC 3 cut(s) 281, 405, 457
Bsp143I GATC 4 cut(s) 94, 534, 700, 727
Bsp1720I GCTNAGC 1 cut(s) 589
BspANI GGCC 3 cut(s) 281, 405, 457
BspCNI CTCAG 2 cut(s) 172, 602
BspHI TCATGA 1 cut(s) 88
BspPI GGATC 1 cut(s) 542
BsrDI GCAATG 2 cut(s) 630, 703
BssMI GATC 4 cut(s) 94, 534, 700, 727
Bst4CI ACNGT 3 cut(s) 181, 321, 517
Bst6I CTCTTC 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 505
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 4 cut(s) 159, 493, 589, 704
BstF5I GGATG 1 cut(s) 510
BstH2I RGCGCY 1 cut(s) 596
BstHHI GCGC 1 cut(s) 595
BstKTI GATC 4 cut(s) 97, 537, 703, 730
BstMBI GATC 4 cut(s) 94, 534, 700, 727
BstMWI GCNNNNNNNGC 1 cut(s) 505
BstV1I GCAGC 1 cut(s) 126
BsuRI GGCC 3 cut(s) 281, 405, 457
BtsCI GGATG 1 cut(s) 510
BtsIMutI CAGTG 2 cut(s) 213, 522
Cac8I GCNNGC 1 cut(s) 225
CaiI CAGNNNCTG 1 cut(s) 319
CciI TCATGA 1 cut(s) 88
CfoI GCGC 1 cut(s) 595
Cfr13I GGNCC 1 cut(s) 279
Csp6I GTAC 2 cut(s) 490, 565
CviAII CATG 4 cut(s) 89, 185, 302, 780
CviJI RGCY 9 cut(s) 281, 341, 347, 405, 437, 457, 555, 588, 740
CviKI_1 RGCY 9 cut(s) 281, 341, 347, 405, 437, 457, 555, 588, 740
CviQI GTAC 2 cut(s) 490, 565
DdeI CTNAG 4 cut(s) 159, 493, 589, 704
DpnI GATC 4 cut(s) 96, 536, 702, 729
DpnII GATC 4 cut(s) 94, 534, 700, 727
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco147I AGGCCT 2 cut(s) 405, 457
Eco32I GATATC 1 cut(s) 522
Eco47III AGCGCT 1 cut(s) 594
EcoRV GATATC 1 cut(s) 522
FaeI CATG 4 cut(s) 92, 188, 305, 783
FatI CATG 4 cut(s) 88, 184, 301, 779
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 1 cut(s) 517
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 3 cut(s) 407, 737, 817
GlaI GCGC 1 cut(s) 594
GluI GCNGC 1 cut(s) 115
GsaI CCCAGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 363
HaeII RGCGCY 1 cut(s) 596
HaeIII GGCC 3 cut(s) 281, 405, 457
HapII CCGG 1 cut(s) 228
HhaI GCGC 1 cut(s) 595
Hin1II CATG 4 cut(s) 92, 188, 305, 783
Hin6I GCGC 1 cut(s) 593
HinP1I GCGC 1 cut(s) 593
HinfI GANTC 2 cut(s) 154, 189
HpaII CCGG 1 cut(s) 228
Hpy166II GTNNAC 1 cut(s) 640
Hpy188I TCNGA 2 cut(s) 162, 245
Hpy188III TCNNGA 4 cut(s) 89, 313, 731, 802
Hpy8I GTNNAC 1 cut(s) 640
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 3 cut(s) 181, 321, 517
HpyCH4V TGCA 5 cut(s) 4, 44, 499, 775, 797
HpyF10VI GCNNNNNNNGC 1 cut(s) 505
HpyF3I CTNAG 4 cut(s) 159, 493, 589, 704
Hsp92II CATG 4 cut(s) 92, 188, 305, 783
HspAI GCGC 1 cut(s) 593
Kzo9I GATC 4 cut(s) 94, 534, 700, 727
LmnI GCTCC 1 cut(s) 344
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 2 cut(s) 35, 495
MaeI CTAG 3 cut(s) 407, 737, 817
MaeIII GTNAC 2 cut(s) 119, 175
MalI GATC 4 cut(s) 96, 536, 702, 729
MboI GATC 4 cut(s) 94, 534, 700, 727
MboII GAAGA 7 cut(s) 44, 47, 50, 53, 104, 272, 283
MluCI AATT 2 cut(s) 306, 722
MlyI GAGTC 2 cut(s) 163, 183
MnlI CCTC 4 cut(s) 168, 203, 468, 780
MroXI GAANNNNTTC 1 cut(s) 377
MseI TTAA 6 cut(s) 32, 132, 171, 218, 540, 557
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 505
NdeII GATC 4 cut(s) 94, 534, 700, 727
NlaIII CATG 4 cut(s) 92, 188, 305, 783
NmuCI GTSAC 1 cut(s) 119
PagI TCATGA 1 cut(s) 88
PceI AGGCCT 2 cut(s) 405, 457
PdmI GAANNNNTTC 1 cut(s) 377
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 2 cut(s) 162, 183
PpsI GAGTC 2 cut(s) 162, 183
PspFI CCCAGC 1 cut(s) 110
PspPI GGNCC 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 2 cut(s) 491, 566
RsaNI GTAC 2 cut(s) 490, 565
SaqAI TTAA 6 cut(s) 32, 132, 171, 218, 540, 557
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 4 cut(s) 94, 534, 700, 727
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 2 cut(s) 163, 183
SetI ASST 4 cut(s) 343, 349, 590, 742
SfaNI GCATC 2 cut(s) 35, 495
SmlI CTYRAG 1 cut(s) 800
SmoI CTYRAG 1 cut(s) 800
Sse9I AATT 2 cut(s) 306, 722
SseBI AGGCCT 2 cut(s) 405, 457
SspMI CTAG 3 cut(s) 407, 737, 817
StuI AGGCCT 2 cut(s) 405, 457
TaaI ACNGT 3 cut(s) 181, 321, 517
TasI AATT 2 cut(s) 306, 722
Tru1I TTAA 6 cut(s) 32, 132, 171, 218, 540, 557
Tru9I TTAA 6 cut(s) 32, 132, 171, 218, 540, 557
TscAI CASTG 2 cut(s) 213, 522
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 105, 173
TspRI CASTG 2 cut(s) 213, 522
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 3 cut(s) 407, 737, 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.