Rh5AG107000

Eukaryotic cytochrome b561

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0011768
Physical Location & Seq
Reverse (-)
9780679 .. 9783138
2460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG107000.1

Sequence Viewer

Length: 657 bp
ATGACATTTAATGTTACAGTTCATGGAATCCTCTTATGGTTTTCAATGGGGTTCTTAATGCCTGCTGGAATACTTGTTATCAGAATGTCTGTTAGAGAAGAACAAGGGACAACAAGGGCCAAAGTTCTCTTCTATTTCCATGTAATTTTCCAGATACTGTCGGCGCTTCTTGCCACAGCTGGAGCTGTGATGTCCATCAAAACCTTTGAGAACTCATTCAATAACAACCACCAAAGATTAGGCCTAGCACTTTATGTTGCCATCTGGGTGCAAGCCTTGATTGGTTTGTTCAGGCCTCACAGGGGAAAGAAGGAAAGAAGTGTGTGGTACCTAGTGCATTGGATGCTTGGAACAGTGATATCATTAGCGGGGATTATTAACATATACACGGGCTTAAATGCATACCACAAGAGAACAAAGAGAAGCTCAGCGCTTTGGACTATCCTTTTCACAGCAGAGTTGTCTGTCATTGCTGTTTACTATCTATTCCAAGATAAAAGAGATTACATACAAAAGCAAGGAGCGGCTTCAGGCAATGATCTTAGTGAAGCAGTCAGGCAGTTGGATCAAGAACTTGCTCAAAGGCAGAACCAAAAGGAGTTGTTGCCTCCGCAACCATGTGGCAAACAAAATGCACTCAAGAACTTGTTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

218

Amino Acids

24.82

Weight (kDa)

9.86

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 7 - 133 1.6e-10 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18260
fragaria_vesca FvH4_3g05770 FvH4_3g05770
malus_domestica MD05G1285600.v1.1 MD10G1263600.v1.1
prunus_persica Prupe.4G079100_v2.0.a1
pyrus_communis pycom05g26460 pycom10g21980
rosa_chinensis RchiOBHm_Chr5g0013761
rosa_laevigata RLG00000032044
rosa_multiflora Rmu_co8478607.1_g000001 Rmu_ssc0000256.1_g000002
rosa_roxburghii Rroxscaffold_1G00062880
rosa_rugosa Rorug05G0012700
rosa_samantha Rh5AG107000 Rh5BG103100 Rh5CG114900 Rh5DG101800
rosa_wichuraiana Rw5G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 327
AccB1I GGYRCC 1 cut(s) 327
AccBSI CCGCTC 1 cut(s) 524
AciI CCGC 3 cut(s) 368, 524, 611
AclWI GGATC 1 cut(s) 573
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 1 cut(s) 329
AfeI AGCGCT 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 2 cut(s) 45, 220
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 3 cut(s) 179, 185, 426
AluI AGCT 3 cut(s) 179, 185, 426
AlwI GGATC 1 cut(s) 573
AlwNI CAGNNNCTG 1 cut(s) 157
Aor51HI AGCGCT 1 cut(s) 432
AoxI GGCC 3 cut(s) 117, 241, 293
Asp700I GAANNNNTTC 1 cut(s) 215
Asp718I GGTACC 1 cut(s) 327
AspLEI GCGC 2 cut(s) 166, 433
AspS9I GGNCC 1 cut(s) 117
BanI GGYRCC 1 cut(s) 327
BccI CCATC 2 cut(s) 203, 269
BfaI CTAG 3 cut(s) 245, 332, 655
BfoI RGCGCY 2 cut(s) 167, 434
BisI GCNGC 1 cut(s) 525
BlpI GCTNAGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 526
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 329
BmsI GCATC 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 427
BpuEI CTTGAG 1 cut(s) 623
BsaBI GATNNNNATC 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse3DI GCAATG 2 cut(s) 468, 541
Bse8I GATNNNNATC 1 cut(s) 194
BseGI GGATG 1 cut(s) 348
BseJI GATNNNNATC 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMI GCAATG 2 cut(s) 468, 541
BseMII CTCAG 1 cut(s) 441
BshFI GGCC 3 cut(s) 119, 243, 295
BshNI GGYRCC 1 cut(s) 327
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 3 cut(s) 119, 243, 295
Bsp143I GATC 2 cut(s) 538, 565
Bsp1720I GCTNAGC 1 cut(s) 427
BspACI CCGC 3 cut(s) 368, 524, 611
BspANI GGCC 3 cut(s) 119, 243, 295
BspCNI CTCAG 1 cut(s) 440
BspLI GGNNCC 1 cut(s) 329
BspPI GGATC 1 cut(s) 573
BspT107I GGYRCC 1 cut(s) 327
BsrBI CCGCTC 1 cut(s) 524
BsrDI GCAATG 2 cut(s) 468, 541
BssMI GATC 2 cut(s) 538, 565
Bst4CI ACNGT 3 cut(s) 19, 159, 355
Bst6I CTCTTC 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 343
BstC8I GCNNGC 2 cut(s) 63, 273
BstDEI CTNAG 2 cut(s) 427, 542
BstF5I GGATG 1 cut(s) 348
BstH2I RGCGCY 2 cut(s) 167, 434
BstHHI GCGC 2 cut(s) 166, 433
BstKTI GATC 2 cut(s) 541, 568
BstMBI GATC 2 cut(s) 538, 565
BstMWI GCNNNNNNNGC 2 cut(s) 170, 343
BsuRI GGCC 3 cut(s) 119, 243, 295
BtsCI GGATG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 2 cut(s) 63, 273
CaiI CAGNNNCTG 1 cut(s) 157
CfoI GCGC 2 cut(s) 166, 433
Cfr13I GGNCC 1 cut(s) 117
Csp6I GTAC 1 cut(s) 328
CviAII CATG 3 cut(s) 23, 140, 618
CviJI RGCY 9 cut(s) 119, 179, 185, 243, 275, 295, 393, 426, 527
CviKI_1 RGCY 9 cut(s) 119, 179, 185, 243, 275, 295, 393, 426, 527
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 2 cut(s) 427, 542
DpnI GATC 2 cut(s) 540, 567
DpnII GATC 2 cut(s) 538, 565
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco147I AGGCCT 2 cut(s) 243, 295
Eco32I GATATC 1 cut(s) 360
Eco47III AGCGCT 1 cut(s) 432
Eco57I CTGAAG 1 cut(s) 513
EcoRV GATATC 1 cut(s) 360
EcoT22I ATGCAT 1 cut(s) 403
FaeI CATG 3 cut(s) 26, 143, 621
FaiI YATR 9 cut(s) 24, 37, 141, 255, 383, 385, 403, 509, 619
FaqI GGGAC 1 cut(s) 121
FatI CATG 3 cut(s) 22, 139, 617
FauI CCCGC 1 cut(s) 361
Fnu4HI GCNGC 1 cut(s) 525
FokI GGATG 1 cut(s) 355
Fsp4HI GCNGC 1 cut(s) 525
FspBI CTAG 3 cut(s) 245, 332, 655
GlaI GCGC 2 cut(s) 165, 432
GluI GCNGC 1 cut(s) 525
GsuI CTGGAG 1 cut(s) 201
HaeII RGCGCY 2 cut(s) 167, 434
HaeIII GGCC 3 cut(s) 119, 243, 295
HhaI GCGC 2 cut(s) 166, 433
Hin1II CATG 3 cut(s) 26, 143, 621
Hin6I GCGC 2 cut(s) 164, 431
HinP1I GCGC 2 cut(s) 164, 431
HinfI GANTC 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 3 cut(s) 151, 569, 640
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 3 cut(s) 19, 159, 355
HpyCH4V TGCA 4 cut(s) 271, 337, 401, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 343
HpyF3I CTNAG 2 cut(s) 427, 542
Hsp92II CATG 3 cut(s) 26, 143, 621
HspAI GCGC 2 cut(s) 164, 431
KpnI GGTACC 1 cut(s) 331
Kzo9I GATC 2 cut(s) 538, 565
LmnI GCTCC 2 cut(s) 182, 521
LpnPI CCDG 9 cut(s) 51, 75, 164, 165, 250, 277, 286, 516, 541
LweI GCATC 1 cut(s) 333
MaeI CTAG 3 cut(s) 245, 332, 655
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 540, 567
MbiI CCGCTC 1 cut(s) 524
MboI GATC 2 cut(s) 538, 565
MboII GAAGA 2 cut(s) 110, 121
MluCI AATT 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 543
MnlI CCTC 3 cut(s) 41, 306, 618
Mph1103I ATGCAT 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 4 cut(s) 9, 56, 378, 395
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 170, 343
NdeII GATC 2 cut(s) 538, 565
NlaIII CATG 3 cut(s) 26, 143, 621
NlaIV GGNNCC 1 cut(s) 329
NsiI ATGCAT 1 cut(s) 403
PceI AGGCCT 2 cut(s) 243, 295
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 1 cut(s) 526
PspN4I GGNNCC 1 cut(s) 329
PspPI GGNCC 1 cut(s) 117
PstNI CAGNNNCTG 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 4 cut(s) 9, 56, 378, 395
SatI GCNGC 1 cut(s) 525
Sau3AI GATC 2 cut(s) 538, 565
Sau96I GGNCC 1 cut(s) 117
SetI ASST 5 cut(s) 181, 187, 206, 333, 428
SfaNI GCATC 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 638
SmoI CTYRAG 1 cut(s) 638
Sse9I AATT 1 cut(s) 144
SseBI AGGCCT 2 cut(s) 243, 295
SsiI CCGC 3 cut(s) 368, 524, 611
SspMI CTAG 3 cut(s) 245, 332, 655
StuI AGGCCT 2 cut(s) 243, 295
TaaI ACNGT 3 cut(s) 19, 159, 355
TasI AATT 1 cut(s) 144
TauI GCSGC 1 cut(s) 527
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 4 cut(s) 9, 56, 378, 395
Tru9I TTAA 4 cut(s) 9, 56, 378, 395
TscAI CASTG 1 cut(s) 360
TspDTI ATGAA 1 cut(s) 11
TspRI CASTG 1 cut(s) 360
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 3 cut(s) 245, 332, 655
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.