Rh5BG103100

Eukaryotic cytochrome b561

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011768
Physical Location & Seq
Reverse (-)
9428522 .. 9431355
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG103100.1

Sequence Viewer

Length: 822 bp
ATGCAAATCACTTATCTCAAACAAGCATCTTTAACTATTTCTGCATATTATCTTCTTCTTCTTCTGCCATTGGTTGTTTGCTCATCTCATGAAGATCATCAAATATTCAACCCCAGCAGCAGTCACAAAAGCATTAAAGACAACTTTCACAAGTTGAGTCCTCAGATGGCATTTAATGTTACAGTTCATGGAATCCTCTTATGGTTTTCAATGGGGTTCTTAATGCCTGCTGGAATACTTGTTATCAGAATGTCTGTTAGAGAAGAACAAGGAACAACAAGGGCCAAAGTTCTCTTCTATTTCCATGTAATTTTCCAGATACTGTCGGTGCTTCTTGCCACAGCTGGAGCTGTGATGTCCATCAAAAACTTTGAGAACTCATTCAATAACAACCACCAAAGATTAGGCCTAGCACTTTATGTTGCCATCTGGGTTCAAGCCTTGATTGGTTTATTCAGGCCTCACAGGGGAAAGAAGGAAAGAAGTGTGTGGTACCTGGTGCATTGGATGCTTGGAACAGTGATATCATTAGTGGGGATTATTAACATATACACGGGCTTAAATGCATACCACAAGAGAACAAAGAGAAGCTCAGCGATTTGGACTATCCTTTTCACAGCAGAGTTGTCTGTCATTGCTGTTTACTATCTATTCCAAGATAAAAGAGATTACATACAAAAGCAAGGAGTGGTTTCAGGCAATGATCTTAGTGAAGTAATCAGGCAGTTAGATCAAGAACTTGCTCAAAGGCAGAACCAAAAGGAGTTGTTGCCTCTGCAACCATGTGGCAAACAAAATGCACTCAAGAACTTGTTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

273

Amino Acids

31.24

Weight (kDa)

9.67

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 62 - 188 3.5e-11 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18260
fragaria_vesca FvH4_3g05770 FvH4_3g05770
malus_domestica MD05G1285600.v1.1 MD10G1263600.v1.1
prunus_persica Prupe.4G079100_v2.0.a1
pyrus_communis pycom05g26460 pycom10g21980
rosa_chinensis RchiOBHm_Chr5g0013761
rosa_laevigata RLG00000032044
rosa_multiflora Rmu_co8478607.1_g000001 Rmu_ssc0000256.1_g000002
rosa_roxburghii Rroxscaffold_1G00062880
rosa_rugosa Rorug05G0012700
rosa_samantha Rh5AG107000 Rh5BG103100 Rh5CG114900 Rh5DG101800
rosa_wichuraiana Rw5G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 492
AccB1I GGYRCC 1 cut(s) 492
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 1 cut(s) 467
AgsI TTSAA 4 cut(s) 109, 210, 385, 437
AjnI CCWGG 1 cut(s) 495
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 3 cut(s) 344, 350, 591
AluI AGCT 3 cut(s) 344, 350, 591
AlwNI CAGNNNCTG 1 cut(s) 322
AoxI GGCC 3 cut(s) 282, 406, 458
ApeKI GCWGC 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 380
Asp718I GGTACC 1 cut(s) 492
AspS9I GGNCC 1 cut(s) 282
BanI GGYRCC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 129
BccI CCATC 3 cut(s) 160, 368, 434
BciT130I CCWGG 1 cut(s) 497
BfaI CTAG 2 cut(s) 410, 820
BisI GCNGC 1 cut(s) 118
BlpI GCTNAGC 1 cut(s) 592
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 494
BmrFI CCNGG 1 cut(s) 497
BmsI GCATC 2 cut(s) 35, 498
BpmI CTGGAG 1 cut(s) 366
Bpu1102I GCTNAGC 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 788
BsaBI GATNNNNATC 1 cut(s) 359
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse3DI GCAATG 2 cut(s) 633, 706
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 1 cut(s) 497
BseGI GGATG 1 cut(s) 513
BseJI GATNNNNATC 1 cut(s) 359
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMI GCAATG 2 cut(s) 633, 706
BseMII CTCAG 2 cut(s) 176, 606
BseXI GCAGC 1 cut(s) 129
BseYI CCCAGC 1 cut(s) 113
BshFI GGCC 3 cut(s) 284, 408, 460
BshNI GGYRCC 1 cut(s) 492
BslI CCNNNNNNNGG 1 cut(s) 467
BsnI GGCC 3 cut(s) 284, 408, 460
Bsp143I GATC 3 cut(s) 94, 703, 730
Bsp1720I GCTNAGC 1 cut(s) 592
BspANI GGCC 3 cut(s) 284, 408, 460
BspCNI CTCAG 2 cut(s) 175, 605
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 494
BspT107I GGYRCC 1 cut(s) 492
BsrDI GCAATG 2 cut(s) 633, 706
BssMI GATC 3 cut(s) 94, 703, 730
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 3 cut(s) 184, 324, 520
Bst6I CTCTTC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 508
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 3 cut(s) 162, 592, 707
BstF5I GGATG 1 cut(s) 513
BstKTI GATC 3 cut(s) 97, 706, 733
BstMBI GATC 3 cut(s) 94, 703, 730
BstMWI GCNNNNNNNGC 1 cut(s) 508
BstNI CCWGG 1 cut(s) 497
BstSCI CCNGG 1 cut(s) 495
BstV1I GCAGC 1 cut(s) 129
BsuRI GGCC 3 cut(s) 284, 408, 460
BtsCI GGATG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 525
Cac8I GCNNGC 1 cut(s) 228
CaiI CAGNNNCTG 1 cut(s) 322
CciI TCATGA 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 282
CsiI ACCWGGT 1 cut(s) 495
Csp6I GTAC 1 cut(s) 493
CviAII CATG 4 cut(s) 89, 188, 305, 783
CviJI RGCY 8 cut(s) 284, 344, 350, 408, 440, 460, 558, 591
CviKI_1 RGCY 8 cut(s) 284, 344, 350, 408, 440, 460, 558, 591
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 3 cut(s) 162, 592, 707
DpnI GATC 3 cut(s) 96, 705, 732
DpnII GATC 3 cut(s) 94, 703, 730
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Eco147I AGGCCT 2 cut(s) 408, 460
Eco32I GATATC 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 495
EcoRV GATATC 1 cut(s) 525
EcoT22I ATGCAT 1 cut(s) 568
FaeI CATG 4 cut(s) 92, 191, 308, 786
FatI CATG 4 cut(s) 88, 187, 304, 782
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 1 cut(s) 520
Fsp4HI GCNGC 1 cut(s) 118
FspBI CTAG 2 cut(s) 410, 820
GluI GCNGC 1 cut(s) 118
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 3 cut(s) 284, 408, 460
Hin1II CATG 4 cut(s) 92, 191, 308, 786
HinfI GANTC 2 cut(s) 157, 192
Hpy166II GTNNAC 1 cut(s) 643
Hpy188I TCNGA 2 cut(s) 165, 248
Hpy188III TCNNGA 4 cut(s) 89, 316, 734, 805
Hpy8I GTNNAC 1 cut(s) 643
HpyAV CCTTC 1 cut(s) 469
HpyCH4III ACNGT 3 cut(s) 184, 324, 520
HpyCH4V TGCA 6 cut(s) 4, 44, 502, 566, 778, 800
HpyF10VI GCNNNNNNNGC 1 cut(s) 508
HpyF3I CTNAG 3 cut(s) 162, 592, 707
Hsp92II CATG 4 cut(s) 92, 191, 308, 786
KpnI GGTACC 1 cut(s) 496
Kzo9I GATC 3 cut(s) 94, 703, 730
LmnI GCTCC 1 cut(s) 347
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 2 cut(s) 35, 498
MabI ACCWGGT 1 cut(s) 495
MaeI CTAG 2 cut(s) 410, 820
MaeIII GTNAC 2 cut(s) 122, 178
MalI GATC 3 cut(s) 96, 705, 732
MboI GATC 3 cut(s) 94, 703, 730
MboII GAAGA 7 cut(s) 44, 47, 50, 53, 104, 275, 286
MluCI AATT 1 cut(s) 309
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 4 cut(s) 171, 206, 471, 783
Mph1103I ATGCAT 1 cut(s) 568
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 6 cut(s) 32, 135, 174, 221, 543, 560
MspA1I CMGCKG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 497
MvaI CCWGG 1 cut(s) 497
MwoI GCNNNNNNNGC 1 cut(s) 508
NdeII GATC 3 cut(s) 94, 703, 730
NlaIII CATG 4 cut(s) 92, 191, 308, 786
NlaIV GGNNCC 1 cut(s) 494
NmuCI GTSAC 1 cut(s) 122
NsiI ATGCAT 1 cut(s) 568
PagI TCATGA 1 cut(s) 88
PceI AGGCCT 2 cut(s) 408, 460
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 1 cut(s) 192
PkrI GCNGC 1 cut(s) 119
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 495
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 1 cut(s) 494
PspPI GGNCC 1 cut(s) 282
PstNI CAGNNNCTG 1 cut(s) 322
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
SaqAI TTAA 6 cut(s) 32, 135, 174, 221, 543, 560
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 3 cut(s) 94, 703, 730
Sau96I GGNCC 1 cut(s) 282
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 497
SetI ASST 4 cut(s) 346, 352, 498, 593
SexAI ACCWGGT 1 cut(s) 495
SfaNI GCATC 2 cut(s) 35, 498
SmlI CTYRAG 1 cut(s) 803
SmoI CTYRAG 1 cut(s) 803
Sse9I AATT 1 cut(s) 309
SseBI AGGCCT 2 cut(s) 408, 460
SspI AATATT 1 cut(s) 105
SspMI CTAG 2 cut(s) 410, 820
StuI AGGCCT 2 cut(s) 408, 460
StyD4I CCNGG 1 cut(s) 495
TaaI ACNGT 3 cut(s) 184, 324, 520
TasI AATT 1 cut(s) 309
TfiI GAWTC 1 cut(s) 192
Tru1I TTAA 6 cut(s) 32, 135, 174, 221, 543, 560
Tru9I TTAA 6 cut(s) 32, 135, 174, 221, 543, 560
TscAI CASTG 1 cut(s) 525
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 105, 176
TspRI CASTG 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 380
XspI CTAG 2 cut(s) 410, 820
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.