Rw5G009330

Eukaryotic cytochrome b561

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0011768
Physical Location & Seq
Reverse (-)
9994675 .. 9996855
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009330.1

Sequence Viewer

Length: 834 bp
ATGCAAATCACTTATCTCAAACAAGCATCTTTAACTATTTCTGCATATTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTAGTTGTTTGCTCATCTTATGAAGACCATCAAATCAACCCCAGCAGCAGTCACAAAAGCATTAAAGACAACTTTCACAAGTTGAGTCCTCAGATGACATTTAATGTTACAGTTCATGGAATCCTCTTATGGTTTTCAATGGGGTTCTTAATGCCTGCTGGAATACTTGTTATCAGAATGTCTGTTAGAGAAGAACAAGGGACAACAAGGGCCAAAGTTCTCTTCTATTTCCATGTAATTTTCCAGATACTGTCGGCGCTTCTTGCCACAGCTGGAGCTGTGATGTCCATCAAAACCTTTGAGAACTCATTCAATAACAACCACCAAAGATTAGGCCTAGCACTTTATGTTGCCATCTGGGTGCAAGCCTTGATTGGTTTGTTCAGGCCTCACAGGGGAAAGAAGGAAAGAAGTGTGTGGTACCTAGTGCATTGGATGCTTGGAACAGTGATATCATTAGCGGGGATTATTAACATATACACGGGCTTAAATGCATACCACAAGAGAACAAAGAGAAGCTCAGCGCTTTGGACTATCCTTTTCACAGCAGAGTTGTCTGTCATTGCTGTTTACTATCTATTCCAAGATAAAAGAGATTACATACAAAAGCAAGGAGCGGCTTCAGGCAATGATCTTAGTGAAGCAGTCAGGCAGTTGGATCAAGAACTTGCTCAAAGGCAGAACCAAAAGGAGTTGTTGCCTCCGCAACCATGTGGCAAACAAAATGCACTCAAGAACTTGTTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

277

Amino Acids

31.53

Weight (kDa)

9.65

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 66 - 192 3.2e-10 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18260
fragaria_vesca FvH4_3g05770 FvH4_3g05770
malus_domestica MD05G1285600.v1.1 MD10G1263600.v1.1
prunus_persica Prupe.4G079100_v2.0.a1
pyrus_communis pycom05g26460 pycom10g21980
rosa_chinensis RchiOBHm_Chr5g0013761
rosa_laevigata RLG00000032044
rosa_multiflora Rmu_co8478607.1_g000001 Rmu_ssc0000256.1_g000002
rosa_roxburghii Rroxscaffold_1G00062880
rosa_rugosa Rorug05G0012700
rosa_samantha Rh5AG107000 Rh5BG103100 Rh5CG114900 Rh5DG101800
rosa_wichuraiana Rw5G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 504
AccBSI CCGCTC 1 cut(s) 701
AciI CCGC 3 cut(s) 545, 701, 788
AclWI GGATC 1 cut(s) 750
AcuI CTGAAG 1 cut(s) 690
AfaI GTAC 1 cut(s) 506
AfeI AGCGCT 1 cut(s) 609
AfiI CCNNNNNNNGG 1 cut(s) 479
AgsI TTSAA 2 cut(s) 222, 397
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AluBI AGCT 3 cut(s) 356, 362, 603
AluI AGCT 3 cut(s) 356, 362, 603
AlwI GGATC 1 cut(s) 750
AlwNI CAGNNNCTG 1 cut(s) 334
Aor51HI AGCGCT 1 cut(s) 609
AoxI GGCC 3 cut(s) 294, 418, 470
ApeKI GCWGC 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 392
Asp718I GGTACC 1 cut(s) 504
AspLEI GCGC 2 cut(s) 343, 610
AspS9I GGNCC 1 cut(s) 294
BanI GGYRCC 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 141
BccI CCATC 3 cut(s) 120, 380, 446
BfaI CTAG 3 cut(s) 422, 509, 832
BfoI RGCGCY 2 cut(s) 344, 611
BisI GCNGC 2 cut(s) 130, 702
BlpI GCTNAGC 1 cut(s) 604
BlsI GCNGC 2 cut(s) 131, 703
BmgT120I GGNCC 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 506
BmsI GCATC 2 cut(s) 35, 510
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 378
Bpu1102I GCTNAGC 1 cut(s) 604
BpuEI CTTGAG 1 cut(s) 800
BsaBI GATNNNNATC 1 cut(s) 371
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse3DI GCAATG 2 cut(s) 645, 718
Bse8I GATNNNNATC 1 cut(s) 371
BseGI GGATG 1 cut(s) 525
BseJI GATNNNNATC 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMI GCAATG 2 cut(s) 645, 718
BseMII CTCAG 2 cut(s) 188, 618
BseXI GCAGC 1 cut(s) 141
BseYI CCCAGC 1 cut(s) 125
BshFI GGCC 3 cut(s) 296, 420, 472
BshNI GGYRCC 1 cut(s) 504
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 479
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 3 cut(s) 296, 420, 472
Bsp143I GATC 2 cut(s) 715, 742
Bsp1720I GCTNAGC 1 cut(s) 604
BspACI CCGC 3 cut(s) 545, 701, 788
BspANI GGCC 3 cut(s) 296, 420, 472
BspCNI CTCAG 2 cut(s) 187, 617
BspLI GGNNCC 1 cut(s) 506
BspPI GGATC 1 cut(s) 750
BspT107I GGYRCC 1 cut(s) 504
BsrBI CCGCTC 1 cut(s) 701
BsrDI GCAATG 2 cut(s) 645, 718
BssMI GATC 2 cut(s) 715, 742
Bst4CI ACNGT 3 cut(s) 196, 336, 532
Bst6I CTCTTC 1 cut(s) 311
BstAPI GCANNNNNTGC 1 cut(s) 520
BstC8I GCNNGC 2 cut(s) 240, 450
BstDEI CTNAG 3 cut(s) 174, 604, 719
BstF5I GGATG 1 cut(s) 525
BstH2I RGCGCY 2 cut(s) 344, 611
BstHHI GCGC 2 cut(s) 343, 610
BstKTI GATC 2 cut(s) 718, 745
BstMBI GATC 2 cut(s) 715, 742
BstMWI GCNNNNNNNGC 2 cut(s) 347, 520
BstV1I GCAGC 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 3 cut(s) 296, 420, 472
BtsCI GGATG 1 cut(s) 525
BtsIMutI CAGTG 1 cut(s) 537
Cac8I GCNNGC 2 cut(s) 240, 450
CaiI CAGNNNCTG 1 cut(s) 334
CfoI GCGC 2 cut(s) 343, 610
Cfr13I GGNCC 1 cut(s) 294
Csp6I GTAC 1 cut(s) 505
CviAII CATG 3 cut(s) 200, 317, 795
CviJI RGCY 9 cut(s) 296, 356, 362, 420, 452, 472, 570, 603, 704
CviKI_1 RGCY 9 cut(s) 296, 356, 362, 420, 452, 472, 570, 603, 704
CviQI GTAC 1 cut(s) 505
DdeI CTNAG 3 cut(s) 174, 604, 719
DpnI GATC 2 cut(s) 717, 744
DpnII GATC 2 cut(s) 715, 742
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco147I AGGCCT 2 cut(s) 420, 472
Eco32I GATATC 1 cut(s) 537
Eco47III AGCGCT 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 690
EcoRV GATATC 1 cut(s) 537
EcoT22I ATGCAT 1 cut(s) 580
FaeI CATG 3 cut(s) 203, 320, 798
FaqI GGGAC 1 cut(s) 298
FatI CATG 3 cut(s) 199, 316, 794
FauI CCCGC 1 cut(s) 538
Fnu4HI GCNGC 2 cut(s) 130, 702
FokI GGATG 1 cut(s) 532
Fsp4HI GCNGC 2 cut(s) 130, 702
FspBI CTAG 3 cut(s) 422, 509, 832
GlaI GCGC 2 cut(s) 342, 609
GluI GCNGC 2 cut(s) 130, 702
GsaI CCCAGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 378
HaeII RGCGCY 2 cut(s) 344, 611
HaeIII GGCC 3 cut(s) 296, 420, 472
HhaI GCGC 2 cut(s) 343, 610
Hin1II CATG 3 cut(s) 203, 320, 798
Hin6I GCGC 2 cut(s) 341, 608
HinP1I GCGC 2 cut(s) 341, 608
HinfI GANTC 2 cut(s) 169, 204
Hpy166II GTNNAC 1 cut(s) 655
Hpy188I TCNGA 2 cut(s) 177, 260
Hpy188III TCNNGA 3 cut(s) 328, 746, 817
Hpy8I GTNNAC 1 cut(s) 655
HpyAV CCTTC 1 cut(s) 481
HpyCH4III ACNGT 3 cut(s) 196, 336, 532
HpyCH4V TGCA 6 cut(s) 4, 44, 448, 514, 578, 812
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 520
HpyF3I CTNAG 3 cut(s) 174, 604, 719
Hsp92II CATG 3 cut(s) 203, 320, 798
HspAI GCGC 2 cut(s) 341, 608
KpnI GGTACC 1 cut(s) 508
Kzo9I GATC 2 cut(s) 715, 742
LmnI GCTCC 2 cut(s) 359, 698
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 2 cut(s) 35, 510
MaeI CTAG 3 cut(s) 422, 509, 832
MaeIII GTNAC 2 cut(s) 134, 190
MalI GATC 2 cut(s) 717, 744
MbiI CCGCTC 1 cut(s) 701
MboI GATC 2 cut(s) 715, 742
MluCI AATT 1 cut(s) 321
MlyI GAGTC 1 cut(s) 178
MmeI TCCRAC 1 cut(s) 720
MnlI CCTC 4 cut(s) 183, 218, 483, 795
Mph1103I ATGCAT 1 cut(s) 580
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 6 cut(s) 32, 147, 186, 233, 555, 572
MslI CAYNNNNRTG 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 356
MwoI GCNNNNNNNGC 2 cut(s) 347, 520
NdeII GATC 2 cut(s) 715, 742
NlaIII CATG 3 cut(s) 203, 320, 798
NlaIV GGNNCC 1 cut(s) 506
NmuCI GTSAC 1 cut(s) 134
NsiI ATGCAT 1 cut(s) 580
PceI AGGCCT 2 cut(s) 420, 472
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 204
PkrI GCNGC 2 cut(s) 131, 703
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 506
PspPI GGNCC 1 cut(s) 294
PstNI CAGNNNCTG 1 cut(s) 334
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 506
RsaNI GTAC 1 cut(s) 505
RseI CAYNNNNRTG 1 cut(s) 443
SaqAI TTAA 6 cut(s) 32, 147, 186, 233, 555, 572
SatI GCNGC 2 cut(s) 130, 702
Sau3AI GATC 2 cut(s) 715, 742
Sau96I GGNCC 1 cut(s) 294
SchI GAGTC 1 cut(s) 178
SetI ASST 5 cut(s) 358, 364, 383, 510, 605
SfaNI GCATC 2 cut(s) 35, 510
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
Sse9I AATT 1 cut(s) 321
SseBI AGGCCT 2 cut(s) 420, 472
SsiI CCGC 3 cut(s) 545, 701, 788
SspMI CTAG 3 cut(s) 422, 509, 832
StuI AGGCCT 2 cut(s) 420, 472
TaaI ACNGT 3 cut(s) 196, 336, 532
TasI AATT 1 cut(s) 321
TauI GCSGC 1 cut(s) 704
TfiI GAWTC 1 cut(s) 204
Tru1I TTAA 6 cut(s) 32, 147, 186, 233, 555, 572
Tru9I TTAA 6 cut(s) 32, 147, 186, 233, 555, 572
TscAI CASTG 1 cut(s) 537
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 1 cut(s) 129
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 120, 188
TspRI CASTG 1 cut(s) 537
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 3 cut(s) 422, 509, 832
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.