FvH4_3g05770

Coiled-coil domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011768
Physical Location & Seq
Forward (+)
3377639 .. 3379825
2187 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05770.t1

Sequence Viewer

Length: 819 bp
ATGCAAATTGCTTATCTCCAACAGGCTTCTTTAGCTATTTCTGCATATTATCTTCTTCTTCTTCTGCCATTAGTTGTTTGCTCATCTCATGAAGATCATCAGTTCAATCCCAGAGGCAGTCACAAAAGCATTAAGGACAACTTTCACAAGTTGGGTTCTCAGATGACTTTTAATGTTACAGTTCATGGAATCCTCTTATGGTTTTCAATGGGGCTCTTAATGCCTATTGGAATACTTGTTATCAGAATGTCTGTTAGAGAAGAACAAGGGACAACAAGGGCCAAAGTTCTCTTCTATTTCCATGTAATTTTCCAGATACTGTCGGTGCTTGTTGCCACAGCTGGAGCTGTGATGTCCATCAAAAACTTTGAGAACTCATTCGATAATAGCCACCAAAGATTAGGCCTAGCACTTTATGTTGCCATCTGGGTTCAAGCCTTGATTGGATTATTCAGGCCTCACAGGGGAAAGAAGGAAAGAAGTGTGTGGTACATAGTGCATTGGATGCTTGGAACAGTTATATCACTAGTGGGGATCATCAACATATACACAGGCTTGAATGCTTACCACAACAGAACAAGAAGAAGCTCAGGGCTTTGGATTATCCTTTTCACAGCAGAGTTGTGTGTGATTGTTGTTTACTATCTATTCCAAGACAAAAGAGATTACATACAAAACCAAGGAGTGGTTACAGACAATGATTTCAATCTAGCAGTCAGGCAATTAGATCAAGAACTTGCTCAAAGGCAGAACCAAACGGAGTTGATGCCTCAGCAACCATGTGGCAAACGAAATGCACTCAAGAACTTGTTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

273

Amino Acids

31.22

Weight (kDa)

9.46

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 61 - 187 8.9e-10 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18260
fragaria_vesca FvH4_3g05770 FvH4_3g05770
malus_domestica MD05G1285600.v1.1 MD10G1263600.v1.1
prunus_persica Prupe.4G079100_v2.0.a1
pyrus_communis pycom05g26460 pycom10g21980
rosa_chinensis RchiOBHm_Chr5g0013761
rosa_laevigata RLG00000032044
rosa_multiflora Rmu_co8478607.1_g000001 Rmu_ssc0000256.1_g000002
rosa_roxburghii Rroxscaffold_1G00062880
rosa_rugosa Rorug05G0012700
rosa_samantha Rh5AG107000 Rh5BG103100 Rh5CG114900 Rh5DG101800
rosa_wichuraiana Rw5G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 685
AclWI GGATC 1 cut(s) 542
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 2 cut(s) 464, 685
AgsI TTSAA 5 cut(s) 106, 207, 434, 559, 706
AhlI ACTAGT 1 cut(s) 526
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 4 cut(s) 35, 341, 347, 588
AluI AGCT 4 cut(s) 35, 341, 347, 588
AlwI GGATC 1 cut(s) 542
AlwNI CAGNNNCTG 1 cut(s) 319
AoxI GGCC 3 cut(s) 279, 403, 455
Asp700I GAANNNNTTC 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 279
BanII GRGCYC 1 cut(s) 216
BbvCI CCTCAGC 1 cut(s) 771
BccI CCATC 2 cut(s) 365, 431
BcuI ACTAGT 1 cut(s) 526
BfaI CTAG 3 cut(s) 407, 527, 710
BmgT120I GGNCC 1 cut(s) 279
BmsI GCATC 2 cut(s) 495, 756
BpmI CTGGAG 1 cut(s) 363
Bpu10I CCTNAGC 2 cut(s) 589, 771
BpuEI CTTGAG 1 cut(s) 785
BsaBI GATNNNNATC 2 cut(s) 356, 705
BsaJI CCNNGG 1 cut(s) 679
Bsc4I CCNNNNNNNGG 2 cut(s) 464, 685
Bse8I GATNNNNATC 2 cut(s) 356, 705
BseDI CCNNGG 1 cut(s) 679
BseGI GGATG 1 cut(s) 510
BseJI GATNNNNATC 2 cut(s) 356, 705
BseLI CCNNNNNNNGG 2 cut(s) 464, 685
BseMII CTCAG 3 cut(s) 173, 603, 785
BshFI GGCC 3 cut(s) 281, 405, 457
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 2 cut(s) 464, 685
BsmFI GGGAC 1 cut(s) 283
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 3 cut(s) 281, 405, 457
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 3 cut(s) 94, 534, 727
BspANI GGCC 3 cut(s) 281, 405, 457
BspCNI CTCAG 3 cut(s) 172, 602, 784
BspHI TCATGA 1 cut(s) 88
BspPI GGATC 1 cut(s) 542
BssECI CCNNGG 1 cut(s) 679
BssMI GATC 3 cut(s) 94, 534, 727
BssT1I CCWWGG 1 cut(s) 679
Bst4CI ACNGT 3 cut(s) 181, 321, 517
Bst6I CTCTTC 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 505
BstDEI CTNAG 3 cut(s) 159, 589, 771
BstF5I GGATG 1 cut(s) 510
BstKTI GATC 3 cut(s) 97, 537, 730
BstMBI GATC 3 cut(s) 94, 534, 727
BstMWI GCNNNNNNNGC 4 cut(s) 32, 41, 220, 505
BsuRI GGCC 3 cut(s) 281, 405, 457
BtsCI GGATG 1 cut(s) 510
CaiI CAGNNNCTG 1 cut(s) 319
CciI TCATGA 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 279
Csp6I GTAC 1 cut(s) 490
CviAII CATG 4 cut(s) 89, 185, 302, 780
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 3 cut(s) 159, 589, 771
DpnI GATC 3 cut(s) 96, 536, 729
DpnII GATC 3 cut(s) 94, 534, 727
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 679
Eco147I AGGCCT 2 cut(s) 405, 457
Eco24I GRGCYC 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 679
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 679
FaeI CATG 4 cut(s) 92, 188, 305, 783
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 1 cut(s) 283
FatI CATG 4 cut(s) 88, 184, 301, 779
FokI GGATG 1 cut(s) 517
FriOI GRGCYC 1 cut(s) 216
FspBI CTAG 3 cut(s) 407, 527, 710
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 3 cut(s) 281, 405, 457
Hin1II CATG 4 cut(s) 92, 188, 305, 783
HinfI GANTC 1 cut(s) 189
Hpy166II GTNNAC 1 cut(s) 640
Hpy188I TCNGA 2 cut(s) 162, 245
Hpy188III TCNNGA 4 cut(s) 89, 313, 731, 802
Hpy8I GTNNAC 1 cut(s) 640
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 3 cut(s) 181, 321, 517
HpyCH4V TGCA 4 cut(s) 4, 44, 499, 797
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 41, 220, 505
HpyF3I CTNAG 3 cut(s) 159, 589, 771
Hsp92II CATG 4 cut(s) 92, 188, 305, 783
Kzo9I GATC 3 cut(s) 94, 534, 727
LmnI GCTCC 1 cut(s) 344
LweI GCATC 2 cut(s) 495, 756
MaeI CTAG 3 cut(s) 407, 527, 710
MaeIII GTNAC 3 cut(s) 119, 175, 688
MalI GATC 3 cut(s) 96, 536, 729
MboI GATC 3 cut(s) 94, 534, 727
MboII GAAGA 8 cut(s) 44, 47, 50, 53, 104, 272, 283, 594
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 3 cut(s) 6, 306, 722
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 4 cut(s) 107, 203, 468, 780
MroXI GAANNNNTTC 1 cut(s) 377
MseI TTAA 3 cut(s) 132, 171, 218
MspA1I CMGCKG 1 cut(s) 341
Mva1269I GAATGC 1 cut(s) 565
MwoI GCNNNNNNNGC 4 cut(s) 32, 41, 220, 505
NdeII GATC 3 cut(s) 94, 534, 727
NlaIII CATG 4 cut(s) 92, 188, 305, 783
NmuCI GTSAC 1 cut(s) 119
PagI TCATGA 1 cut(s) 88
PceI AGGCCT 2 cut(s) 405, 457
PctI GAATGC 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 377
PfeI GAWTC 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 685
PspPI GGNCC 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
SaqAI TTAA 3 cut(s) 132, 171, 218
Sau3AI GATC 3 cut(s) 94, 534, 727
Sau96I GGNCC 1 cut(s) 279
SduI GDGCHC 1 cut(s) 216
SetI ASST 4 cut(s) 37, 343, 349, 590
SfaNI GCATC 2 cut(s) 495, 756
SmlI CTYRAG 1 cut(s) 800
SmoI CTYRAG 1 cut(s) 800
SpeI ACTAGT 1 cut(s) 526
Sse9I AATT 3 cut(s) 6, 306, 722
SseBI AGGCCT 2 cut(s) 405, 457
SspMI CTAG 3 cut(s) 407, 527, 710
StuI AGGCCT 2 cut(s) 405, 457
StyI CCWWGG 1 cut(s) 679
TaaI ACNGT 3 cut(s) 181, 321, 517
TaqI TCGA 1 cut(s) 381
TasI AATT 3 cut(s) 6, 306, 722
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 3 cut(s) 132, 171, 218
Tru9I TTAA 3 cut(s) 132, 171, 218
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 105, 173
TspGWI ACGGA 1 cut(s) 773
Van91I CCANNNNNTGG 1 cut(s) 685
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 3 cut(s) 407, 527, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.