Rroxscaffold_1G00062880

Eukaryotic cytochrome b561

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011768
Physical Location & Seq
Forward (+)
84918451 .. 84920094
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062880.1

Sequence Viewer

Length: 807 bp
ATGCAAATCACTTATCTCAAACAAGCATCTTTAACTATTTCTGCATATTATCTTCTTCTTCTTCTGCCATTGGTTGTTTGCTCATCTCATGAAGATCATCAAATCAACCCCAGCAGCAGTCACAAAAGCATTAAAGACAACTTTCACAAGTTGAGTCCTCAGATGACATTTAATGTTACAGTTCATGGAATCCTCTTATGGTTTTCAATGGGGTTCTTAATGCCTGCTGGAATACTTGTTATCAGAATGTCTGTTAGAGAAGAACAAGGAACAACAAGGGCCAAAGTGCTCTTCTATTTCCATATACTGTCGGCGCTTCTTGCCACAGCTGGAGCTGTGATGTCCATCAAAAACTTTGAGAACTCATTCAATAACAACCACCAAAGATTAGGCCTAGCACTTTATGTTGCCATCTGGGTTCAAGCTTTGATTGGTTTGTTCAGGCCTCACAGGGGAAAGAAGGAAAGAAGTGTGTGGTACTTAGTGCATTGGATGCTTGGAACAGTGATATCATTAATGGGGATTATGAACATATACACGGGCTTAAATGCGTACCACAAGAGAACAAAGAGAAGCTCAGCGATTTGGACTATCCTTTTCACAGCAGAGTTGTCTGTCATTGCTGTTTACTATCTATTCCAAGATAAAAGAGATTACATACAAAAGCAAGGAGTGGTTTCAGGCAATGATCTCAGTCAAGCAATCAGGCAATTAGATCAAGAACTTGCTCAAAGGCAGAACCAAAAGGACTTGTTGCCTCTGCAACCATGTGGCAAACAAAATGCACTCAAGAACTTGTTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

268

Amino Acids

30.62

Weight (kDa)

9.74

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_B561 PF03188 61 - 183 1.2e-10 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18260
fragaria_vesca FvH4_3g05770 FvH4_3g05770
malus_domestica MD05G1285600.v1.1 MD10G1263600.v1.1
prunus_persica Prupe.4G079100_v2.0.a1
pyrus_communis pycom05g26460 pycom10g21980
rosa_chinensis RchiOBHm_Chr5g0013761
rosa_laevigata RLG00000032044
rosa_multiflora Rmu_co8478607.1_g000001 Rmu_ssc0000256.1_g000002
rosa_roxburghii Rroxscaffold_1G00062880
rosa_rugosa Rorug05G0012700
rosa_samantha Rh5AG107000 Rh5BG103100 Rh5CG114900 Rh5DG101800
rosa_wichuraiana Rw5G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 479, 554
AfiI CCNNNNNNNGG 1 cut(s) 452
AgsI TTSAA 3 cut(s) 207, 370, 422
AjuI GAANNNNNNNTTGG 2 cut(s) 275, 307
AluBI AGCT 4 cut(s) 329, 335, 425, 576
AluI AGCT 4 cut(s) 329, 335, 425, 576
Alw21I GWGCWC 1 cut(s) 291
AoxI GGCC 3 cut(s) 279, 391, 443
ApeKI GCWGC 1 cut(s) 114
AseI ATTAAT 1 cut(s) 515
Asp700I GAANNNNTTC 1 cut(s) 365
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 126
BccI CCATC 2 cut(s) 353, 419
BfaI CTAG 2 cut(s) 395, 805
BfoI RGCGCY 1 cut(s) 317
BisI GCNGC 1 cut(s) 115
BlpI GCTNAGC 1 cut(s) 577
BlsI GCNGC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 279
BmsI GCATC 2 cut(s) 35, 483
BpmI CTGGAG 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 577
BpuEI CTTGAG 1 cut(s) 773
BsaBI GATNNNNATC 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse3DI GCAATG 2 cut(s) 618, 691
Bse8I GATNNNNATC 1 cut(s) 344
BseGI GGATG 1 cut(s) 498
BseJI GATNNNNATC 1 cut(s) 344
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMI GCAATG 2 cut(s) 618, 691
BseMII CTCAG 3 cut(s) 173, 591, 706
BseXI GCAGC 1 cut(s) 126
BseYI CCCAGC 1 cut(s) 110
BshFI GGCC 3 cut(s) 281, 393, 445
BsiHKAI GWGCWC 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 452
BsnI GGCC 3 cut(s) 281, 393, 445
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 3 cut(s) 94, 688, 715
Bsp1720I GCTNAGC 1 cut(s) 577
BspANI GGCC 3 cut(s) 281, 393, 445
BspCNI CTCAG 3 cut(s) 172, 590, 705
BspHI TCATGA 1 cut(s) 88
BspQI GCTCTTC 1 cut(s) 296
BsrDI GCAATG 2 cut(s) 618, 691
BssMI GATC 3 cut(s) 94, 688, 715
Bst4CI ACNGT 3 cut(s) 181, 309, 505
Bst6I CTCTTC 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 493
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 4 cut(s) 159, 481, 577, 692
BstF5I GGATG 1 cut(s) 498
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 3 cut(s) 97, 691, 718
BstMBI GATC 3 cut(s) 94, 688, 715
BstMWI GCNNNNNNNGC 2 cut(s) 320, 493
BstV1I GCAGC 1 cut(s) 126
BsuRI GGCC 3 cut(s) 281, 393, 445
BtsCI GGATG 1 cut(s) 498
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 1 cut(s) 225
CciI TCATGA 1 cut(s) 88
CfoI GCGC 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 279
Csp6I GTAC 2 cut(s) 478, 553
CviAII CATG 3 cut(s) 89, 185, 768
CviJI RGCY 8 cut(s) 281, 329, 335, 393, 425, 445, 543, 576
CviKI_1 RGCY 8 cut(s) 281, 329, 335, 393, 425, 445, 543, 576
CviQI GTAC 2 cut(s) 478, 553
DdeI CTNAG 4 cut(s) 159, 481, 577, 692
DpnI GATC 3 cut(s) 96, 690, 717
DpnII GATC 3 cut(s) 94, 688, 715
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco147I AGGCCT 2 cut(s) 393, 445
Eco32I GATATC 1 cut(s) 510
EcoRV GATATC 1 cut(s) 510
FaeI CATG 3 cut(s) 92, 188, 771
FatI CATG 3 cut(s) 88, 184, 767
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 1 cut(s) 505
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 2 cut(s) 395, 805
GlaI GCGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 115
GsaI CCCAGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 351
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 3 cut(s) 281, 393, 445
HhaI GCGC 1 cut(s) 316
Hin1II CATG 3 cut(s) 92, 188, 771
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 2 cut(s) 154, 189
Hpy166II GTNNAC 1 cut(s) 628
Hpy188I TCNGA 2 cut(s) 162, 245
Hpy188III TCNNGA 3 cut(s) 89, 719, 790
Hpy8I GTNNAC 1 cut(s) 628
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 3 cut(s) 181, 309, 505
HpyCH4V TGCA 5 cut(s) 4, 44, 487, 763, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 320, 493
HpyF3I CTNAG 4 cut(s) 159, 481, 577, 692
Hsp92II CATG 3 cut(s) 92, 188, 771
HspAI GCGC 1 cut(s) 314
Kzo9I GATC 3 cut(s) 94, 688, 715
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 1 cut(s) 332
LpnPI CCDG 9 cut(s) 124, 213, 237, 315, 400, 427, 436, 666, 691
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 2 cut(s) 35, 483
MaeI CTAG 2 cut(s) 395, 805
MaeIII GTNAC 2 cut(s) 119, 175
MalI GATC 3 cut(s) 96, 690, 717
MboI GATC 3 cut(s) 94, 688, 715
MboII GAAGA 7 cut(s) 44, 47, 50, 53, 104, 272, 283
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 1 cut(s) 710
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 4 cut(s) 168, 203, 456, 768
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 6 cut(s) 32, 132, 171, 218, 515, 545
MspA1I CMGCKG 1 cut(s) 329
MwoI GCNNNNNNNGC 2 cut(s) 320, 493
NdeII GATC 3 cut(s) 94, 688, 715
NlaIII CATG 3 cut(s) 92, 188, 771
NmuCI GTSAC 1 cut(s) 119
PagI TCATGA 1 cut(s) 88
PceI AGGCCT 2 cut(s) 393, 445
PciSI GCTCTTC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 365
PfeI GAWTC 1 cut(s) 189
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
PshBI ATTAAT 1 cut(s) 515
PspFI CCCAGC 1 cut(s) 110
PspPI GGNCC 1 cut(s) 279
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 2 cut(s) 479, 554
RsaNI GTAC 2 cut(s) 478, 553
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 6 cut(s) 32, 132, 171, 218, 515, 545
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 3 cut(s) 94, 688, 715
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 1 cut(s) 163
SduI GDGCHC 1 cut(s) 291
SetI ASST 4 cut(s) 331, 337, 427, 578
SfaNI GCATC 2 cut(s) 35, 483
SmlI CTYRAG 1 cut(s) 788
SmoI CTYRAG 1 cut(s) 788
Sse9I AATT 1 cut(s) 710
SseBI AGGCCT 2 cut(s) 393, 445
SspMI CTAG 2 cut(s) 395, 805
StuI AGGCCT 2 cut(s) 393, 445
TaaI ACNGT 3 cut(s) 181, 309, 505
TasI AATT 1 cut(s) 710
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 6 cut(s) 32, 132, 171, 218, 515, 545
Tru9I TTAA 6 cut(s) 32, 132, 171, 218, 515, 545
TscAI CASTG 1 cut(s) 510
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 3 cut(s) 105, 173, 542
TspRI CASTG 1 cut(s) 510
VspI ATTAAT 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 2 cut(s) 395, 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.