Prupe.4G079100_v2.0.a1

Eukaryotic cytochrome b561

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011768
Physical Location & Seq
Reverse (-)
3838780 .. 3841233
2454 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G079100.1

Sequence Viewer

Length: 795 bp
ATGCAAACTTCTCTCAAGCTAGCATCTTTGGCTATTTCTACATGTTATGTTCTTCTTCTACCCTTAGTTGGCTGTTCATATCATGAAGAGGGCAACCAACCCAACGATAAGAACACAGAAGAACACTCTCACAAGTTGAGTCCTCAGATGACATCCAATGTCACAGTTCATGGGCTCCTTTCATGGTTTTCAATGGGGTTCTTAATGCCTGTTGGAATTCTTATCATCAGAATGTCTGTTAGAGAAGAACGTGGGACGACAAGGGCCAGAGTTCTCTTCTATCTCCATGTTATTTTACAGATGCTCTCAGTGCTTCTTGCCACAGCTGGAGCTGTCATGTCCCTCAGAAACTTTGAGAACTCATTCAACAACAACCACCAAAGATTAGGTCTAGCACTTTATGGTGCCATCTGGGTGCAAGCCTTGATAGGATTTTTCAGGCCTCACAGGGGAAAGAAAGAGAGAAGTTTTTGGTACATGGTGCATTGGATGCTTGGAACCCTAATATCATTGGTTGGGATCATCAACATATACACTGGTTTAAATGCCTACCATAAGAGAACACAGAGAAGCTCAGGGCTTTGGACTCTCCTTTTCACAGCTGAAGTGTCTTTCATTGCTGTCTATTATCTAATCCAAGACAAAAGAGAGTACATACAAAAGCAAGGAGTGATTTTAGGCAATCTTGAACCAATCACTCAAGATCAAGAAAATGTTCAAAGGCAAAACCAAAAGGAGCTGCTGCCACAGCAGCCATGTGGCAAACACAATGCACTCAAGAACTTGTTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561

Protein Analysis

265

Amino Acids

30.19

Weight (kDa)

9.46

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011768)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18260
fragaria_vesca FvH4_3g05770 FvH4_3g05770
malus_domestica MD05G1285600.v1.1 MD10G1263600.v1.1
prunus_persica Prupe.4G079100_v2.0.a1
pyrus_communis pycom05g26460 pycom10g21980
rosa_chinensis RchiOBHm_Chr5g0013761
rosa_laevigata RLG00000032044
rosa_multiflora Rmu_co8478607.1_g000001 Rmu_ssc0000256.1_g000002
rosa_roxburghii Rroxscaffold_1G00062880
rosa_rugosa Rorug05G0012700
rosa_samantha Rh5AG107000 Rh5BG103100 Rh5CG114900 Rh5DG101800
rosa_wichuraiana Rw5G009330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 404
AclWI GGATC 1 cut(s) 527
AcsI RAATTY 1 cut(s) 216
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 2 cut(s) 476, 653
AfiI CCNNNNNNNGG 2 cut(s) 68, 449
AflIII ACRYGT 1 cut(s) 41
AgsI TTSAA 4 cut(s) 192, 367, 689, 719
AluBI AGCT 6 cut(s) 19, 326, 332, 573, 602, 739
AluI AGCT 6 cut(s) 19, 326, 332, 573, 602, 739
AlwI GGATC 1 cut(s) 527
AoxI GGCC 2 cut(s) 264, 440
ApeKI GCWGC 3 cut(s) 739, 742, 751
ApoI RAATTY 1 cut(s) 216
ArsI GACNNNNNNTTYG 2 cut(s) 373, 405
Asp700I GAANNNNTTC 2 cut(s) 362, 714
AspS9I GGNCC 1 cut(s) 264
AsuNHI GCTAGC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 177
BbvI GCAGC 3 cut(s) 726, 729, 763
BccI CCATC 1 cut(s) 416
BfaI CTAG 2 cut(s) 20, 392
BisI GCNGC 3 cut(s) 740, 743, 752
BlsI GCNGC 3 cut(s) 741, 744, 753
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 3 cut(s) 176, 406, 499
BmsI GCATC 3 cut(s) 32, 291, 480
BmtI GCTAGC 1 cut(s) 23
BpmI CTGGAG 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 574
BpuEI CTTGAG 2 cut(s) 684, 761
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 449
Bse1I ACTGG 1 cut(s) 541
Bse3DI GCAATG 1 cut(s) 615
BseGI GGATG 2 cut(s) 152, 495
BseLI CCNNNNNNNGG 2 cut(s) 68, 449
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 4 cut(s) 158, 321, 358, 588
BseNI ACTGG 1 cut(s) 541
BseXI GCAGC 3 cut(s) 726, 729, 763
BshFI GGCC 2 cut(s) 266, 442
BshNI GGYRCC 1 cut(s) 404
BslFI GGGAC 2 cut(s) 268, 325
BslI CCNNNNNNNGG 2 cut(s) 68, 449
BsmFI GGGAC 2 cut(s) 268, 325
BsnI GGCC 2 cut(s) 266, 442
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 2 cut(s) 519, 703
BspANI GGCC 2 cut(s) 266, 442
BspCNI CTCAG 4 cut(s) 157, 320, 357, 587
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 3 cut(s) 176, 406, 499
BspOI GCTAGC 1 cut(s) 23
BspPI GGATC 1 cut(s) 527
BspT107I GGYRCC 1 cut(s) 404
BsrDI GCAATG 1 cut(s) 615
BsrI ACTGG 1 cut(s) 541
BssMI GATC 2 cut(s) 519, 703
Bst4CI ACNGT 1 cut(s) 166
Bst6I CTCTTC 2 cut(s) 81, 281
BstAPI GCANNNNNTGC 1 cut(s) 490
BstC8I GCNNGC 2 cut(s) 21, 420
BstDEI CTNAG 5 cut(s) 64, 144, 307, 344, 574
BstF5I GGATG 2 cut(s) 152, 495
BstKTI GATC 2 cut(s) 522, 706
BstMBI GATC 2 cut(s) 519, 703
BstMWI GCNNNNNNNGC 5 cut(s) 29, 310, 490, 748, 751
BstNSI RCATGY 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 726, 729, 763
BsuRI GGCC 2 cut(s) 266, 442
BtsCI GGATG 2 cut(s) 152, 495
BtsIMutI CAGTG 2 cut(s) 315, 534
Cac8I GCNNGC 2 cut(s) 21, 420
CciI TCATGA 1 cut(s) 82
Cfr13I GGNCC 1 cut(s) 264
Csp6I GTAC 2 cut(s) 475, 652
CviAII CATG 8 cut(s) 42, 83, 170, 183, 287, 337, 478, 756
CviQI GTAC 2 cut(s) 475, 652
DdeI CTNAG 5 cut(s) 64, 144, 307, 344, 574
DpnI GATC 2 cut(s) 521, 705
DpnII GATC 2 cut(s) 519, 703
DraI TTTAAA 1 cut(s) 543
Eam1104I CTCTTC 2 cut(s) 81, 281
EarI CTCTTC 2 cut(s) 81, 281
Eco147I AGGCCT 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 624
EcoRI GAATTC 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 8 cut(s) 45, 86, 173, 186, 290, 340, 481, 759
FaqI GGGAC 2 cut(s) 268, 325
FatI CATG 8 cut(s) 41, 82, 169, 182, 286, 336, 477, 755
Fnu4HI GCNGC 3 cut(s) 740, 743, 752
FokI GGATG 2 cut(s) 139, 502
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 3 cut(s) 740, 743, 752
FspBI CTAG 2 cut(s) 20, 392
GluI GCNGC 3 cut(s) 740, 743, 752
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 2 cut(s) 266, 442
Hin1II CATG 8 cut(s) 45, 86, 173, 186, 290, 340, 481, 759
HinfI GANTC 2 cut(s) 139, 586
Hpy188I TCNGA 3 cut(s) 147, 230, 347
Hpy188III TCNNGA 5 cut(s) 83, 686, 701, 707, 778
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 4, 418, 484, 773
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 310, 490, 748, 751
HpyF3I CTNAG 5 cut(s) 64, 144, 307, 344, 574
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 8 cut(s) 45, 86, 173, 186, 290, 340, 481, 759
Kzo9I GATC 2 cut(s) 519, 703
LmnI GCTCC 3 cut(s) 180, 329, 736
LpnPI CCDG 8 cut(s) 222, 280, 312, 397, 424, 433, 522, 561
Lsp1109I GCAGC 3 cut(s) 726, 729, 763
LweI GCATC 3 cut(s) 32, 291, 480
MaeI CTAG 2 cut(s) 20, 392
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 160
MalI GATC 2 cut(s) 521, 705
MboI GATC 2 cut(s) 519, 703
MboII GAAGA 6 cut(s) 44, 47, 98, 131, 257, 268
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 1 cut(s) 216
MlyI GAGTC 2 cut(s) 148, 580
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 4 cut(s) 82, 153, 353, 453
MroXI GAANNNNTTC 2 cut(s) 362, 714
MseI TTAA 2 cut(s) 203, 542
MslI CAYNNNNRTG 2 cut(s) 230, 413
MspA1I CMGCKG 2 cut(s) 326, 602
MwoI GCNNNNNNNGC 5 cut(s) 29, 310, 490, 748, 751
NdeII GATC 2 cut(s) 519, 703
NheI GCTAGC 1 cut(s) 19
NlaIII CATG 8 cut(s) 45, 86, 173, 186, 290, 340, 481, 759
NlaIV GGNNCC 3 cut(s) 176, 406, 499
NmuCI GTSAC 1 cut(s) 160
NspI RCATGY 1 cut(s) 45
PagI TCATGA 1 cut(s) 82
PceI AGGCCT 1 cut(s) 442
PciI ACATGT 1 cut(s) 41
PdmI GAANNNNTTC 2 cut(s) 362, 714
PkrI GCNGC 3 cut(s) 741, 744, 753
PleI GAGTC 2 cut(s) 147, 580
PpsI GAGTC 2 cut(s) 147, 580
PscI ACATGT 1 cut(s) 41
PspN4I GGNNCC 3 cut(s) 176, 406, 499
PspPI GGNCC 1 cut(s) 264
PvuII CAGCTG 2 cut(s) 326, 602
RsaI GTAC 2 cut(s) 476, 653
RsaNI GTAC 2 cut(s) 475, 652
RseI CAYNNNNRTG 2 cut(s) 230, 413
SaqAI TTAA 2 cut(s) 203, 542
SatI GCNGC 3 cut(s) 740, 743, 752
Sau3AI GATC 2 cut(s) 519, 703
Sau96I GGNCC 1 cut(s) 264
SchI GAGTC 2 cut(s) 148, 580
SduI GDGCHC 1 cut(s) 177
SetI ASST 8 cut(s) 21, 253, 328, 334, 391, 575, 604, 741
SfaNI GCATC 3 cut(s) 32, 291, 480
SmiMI CAYNNNNRTG 2 cut(s) 230, 413
SmlI CTYRAG 3 cut(s) 14, 699, 776
SmoI CTYRAG 3 cut(s) 14, 699, 776
Sse9I AATT 1 cut(s) 216
SseBI AGGCCT 1 cut(s) 442
SspMI CTAG 2 cut(s) 20, 392
StuI AGGCCT 1 cut(s) 442
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 253
TasI AATT 1 cut(s) 216
TatI WGTACW 1 cut(s) 651
Tru1I TTAA 2 cut(s) 203, 542
Tru9I TTAA 2 cut(s) 203, 542
TscAI CASTG 2 cut(s) 315, 541
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 3 cut(s) 739, 742, 751
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 5 cut(s) 66, 99, 158, 171, 604
TspRI CASTG 2 cut(s) 315, 541
XapI RAATTY 1 cut(s) 216
XceI RCATGY 1 cut(s) 45
XmnI GAANNNNTTC 2 cut(s) 362, 714
XspI CTAG 2 cut(s) 20, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.