Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012480

Physical Location & Seq

Genomic Coordinates Reverse (-)

10195537 .. 10196799

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAGAGCTGTAATCCAAAGAGTCTCATCTTCCTCTGTTACGGTGGATGGTCGAATCGTATCGGAGATTGGTCCTGGTCTCTTGGTACTAATTGGAATCCATGAATCAGATACCGAGTCTGACGCTGATTACATATGTCGAAAAGTTTTAAACATGAGATTATTCTCTAATGAAACCACTGGCAAAGGATGGGACCAAAATGTAATGCAGAGGAATTATGGAGTTTTACTTGTTAGTCAATTCACATTATACGGATTCTTGAAAGGTAACAAACCAGATTTTCATGTCGCAATGCCACCTGATAAAGCGAAACCTTTTTACGCCTCTTTAGTTGAGAAATTCCAGAAAGCATATAATCCTGATGCTGTCAAAGATGGTGTGTTTGGAGCTATGATGCAGGTCAATCTTGTAAACGATGGTCCGGTCACGATGCAGCTCGACTCACCTCAATCCACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006450 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0016054 GO:0016070 GO:0016787 GO:0016788 GO:0019478 GO:0019752 GO:0034641 GO:0034660 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0046395 GO:0046416 GO:0046483 GO:0051499 GO:0051500 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tyr_Deacylase

Protein Analysis

153

Amino Acids

16.92

Weight (kDa)

6.72

Isoelectric Point (pI)

26.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tyr_Deacylase	PF02580	2 - 135	4.1e-47	D-Tyr-tRNA(Tyr) deacylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18460 AT4G18460
fragaria_vesca	FvH4_3g08260 FvH4_3g08260 FvH4_3g08260
malus_domestica	MD10G1285600.v1.1
prunus_persica	Prupe.4G056000_v2.0.a1
pyrus_communis	pycom10g23870
rosa_chinensis	RchiOBHm_Chr5g0009821
rosa_laevigata	RLG00000031703
rosa_multiflora	Rmu_co8266315.1_g000001 Rmu_sc0008691.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066370
rosa_rugosa	Rorug04G0446100
rosa_samantha	Rh5AG077600 Rh5BG072700 Rh5CG085100 Rh5DG073200
rosa_wichuraiana	Rw5G007150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	338
AfaI	GTAC	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	3 cut(s)	8, 389, 436
AluI	AGCT	3 cut(s)	8, 389, 436
Alw26I	GTCTC	2 cut(s)	28, 83
ApeKI	GCWGC	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	338
AspS9I	GGNCC	3 cut(s)	71, 193, 419
AsuHPI	GGTGA	1 cut(s)	435
AvaII	GGWCC	3 cut(s)	71, 193, 419
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	4 cut(s)	41, 183, 368, 410
BciT130I	CCWGG	1 cut(s)	75
BcoDI	GTCTC	2 cut(s)	28, 83
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	3 cut(s)	71, 193, 419
BmgT120I	GGNCC	3 cut(s)	71, 193, 419
BmiI	GGNNCC	1 cut(s)	194
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	3 cut(s)	352, 384, 420
BsaI	GGTCTC	1 cut(s)	83
BsaWI	WCCGGW	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	52, 194
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	28, 83
BsmFI	GGGAC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	194
BspMI	ACCTGC	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	52, 194
BstMAI	GTCTC	2 cut(s)	28, 83
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	445
BtsCI	GGATG	2 cut(s)	52, 194
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	388
Cfr13I	GGNCC	3 cut(s)	71, 193, 419
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	3 cut(s)	101, 154, 284
CviJI	RGCY	3 cut(s)	8, 389, 436
CviKI_1	RGCY	3 cut(s)	8, 389, 436
CviQI	GTAC	1 cut(s)	86
DraI	TTTAAA	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	3 cut(s)	71, 193, 419
EcoRII	CCWGG	1 cut(s)	73
FaeI	CATG	3 cut(s)	104, 157, 287
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	3 cut(s)	100, 153, 283
FauNDI	CATATG	1 cut(s)	134
Fnu4HI	GCNGC	1 cut(s)	434
FokI	GGATG	2 cut(s)	59, 201
Fsp4HI	GCNGC	1 cut(s)	434
GluI	GCNGC	1 cut(s)	434
HapII	CCGG	1 cut(s)	422
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	3 cut(s)	104, 157, 287
HinfI	GANTC	7 cut(s)	21, 54, 96, 104, 116, 255, 440
HpaII	CCGG	1 cut(s)	422
HphI	GGTGA	1 cut(s)	435
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	3 cut(s)	64, 109, 121
Hpy188III	TCNNGA	4 cut(s)	259, 343, 359, 427
Hpy8I	GTNNAC	1 cut(s)	412
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4V	TGCA	3 cut(s)	208, 397, 433
Hsp92II	CATG	3 cut(s)	104, 157, 287
LmnI	GCTCC	1 cut(s)	386
LpnPI	CCDG	9 cut(s)	60, 87, 165, 288, 312, 356, 372, 383, 435
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	3 cut(s)	352, 384, 420
MaeIII	GTNAC	3 cut(s)	37, 266, 424
MboII	GAAGA	1 cut(s)	21
MluCI	AATT	4 cut(s)	90, 214, 239, 338
MlyI	GAGTC	3 cut(s)	30, 125, 434
MnlI	CCTC	4 cut(s)	43, 204, 334, 456
MseI	TTAA	1 cut(s)	149
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	134
NlaIII	CATG	3 cut(s)	104, 157, 287
NlaIV	GGNNCC	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	424
PfeI	GAWTC	4 cut(s)	54, 96, 104, 255
PkrI	GCNGC	1 cut(s)	435
PleI	GAGTC	3 cut(s)	29, 124, 434
PpsI	GAGTC	3 cut(s)	29, 124, 434
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	3 cut(s)	71, 193, 419
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	1 cut(s)	434
Sau96I	GGNCC	3 cut(s)	71, 193, 419
SchI	GAGTC	3 cut(s)	30, 125, 434
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	8 cut(s)	10, 268, 301, 316, 391, 402, 438, 448
SfaNI	GCATC	3 cut(s)	352, 384, 420
SinI	GGWCC	3 cut(s)	71, 193, 419
Sse9I	AATT	4 cut(s)	90, 214, 239, 338
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	43
TaqI	TCGA	3 cut(s)	52, 139, 438
TasI	AATT	4 cut(s)	90, 214, 239, 338
TfiI	GAWTC	4 cut(s)	54, 96, 104, 255
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	3 cut(s)	117, 186, 272
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	3 cut(s)	71, 193, 419
XapI	RAATTY	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.