Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012480

Physical Location & Seq

Genomic Coordinates Forward (+)

25842047 .. 25843510

Gene Structure 1464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTACTGCCTGCCGCTGCCAGTGCCTCACTATTGCAAGCACACGCACCAATCCCACAACTTTCGCCCCCGATCCAACACTAAACCAATCAAAGCCATGAGAGCCGTCGTCCAGCGCGTCGCCTCCGCCAGCGTCGAGGTGGAAGGGCGCATCGTGTCGGAGATTGGGCCGGGCCTCCTCGTCCTCGTCGGCCTCCACGACTCCGATTCCACCTTCGACGCCGACTACATATGCCGGAAGGTCTTGAATATGAGGTTGTTCCCAAATGAAAGCACCGGCAGAGGATGGGACCAAAACGTAATGCAGAGAAATTATGAAGTCCTACTTGTGAGTCAGTTTACATTGTACGGAATCTTGAAGGGCAACAAGCCGGATTTTCATGTGGCGATGCCGCCTCAGAAAGCGAAGCCCTTTTATGCTTCTGTGGTTGAGAGCTTCAGAAATTCCTACAAACCTGATGCAGTCAAAGATGGTGTGTTTGGAGCAATGATGAAGGTTAATTTGGTGAATGACGGACCAGTCACAATGCAGATCGACTCACAGTCCCCCAAGAGCTCGAATGATGTGAGCGAAGAACAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002161 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006450 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0016054 GO:0016070 GO:0016787 GO:0016788 GO:0019478 GO:0019752 GO:0034641 GO:0034660 GO:0043170 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0046395 GO:0046416 GO:0046483 GO:0051499 GO:0051500 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0090304 GO:0106074 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tyr_Deacylase

Protein Analysis

195

Amino Acids

21.72

Weight (kDa)

8.73

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tyr_Deacylase	PF02580	34 - 179	1.8e-52	D-Tyr-tRNA(Tyr) deacylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18460 AT4G18460
fragaria_vesca	FvH4_3g08260 FvH4_3g08260 FvH4_3g08260
malus_domestica	MD10G1285600.v1.1
prunus_persica	Prupe.4G056000_v2.0.a1
pyrus_communis	pycom10g23870
rosa_chinensis	RchiOBHm_Chr5g0009821
rosa_laevigata	RLG00000031703
rosa_multiflora	Rmu_co8266315.1_g000001 Rmu_sc0008691.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066370
rosa_rugosa	Rorug04G0446100
rosa_samantha	Rh5AG077600 Rh5BG072700 Rh5CG085100 Rh5DG073200
rosa_wichuraiana	Rw5G007150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	518
AccII	CGCG	1 cut(s)	117
AciI	CCGC	3 cut(s)	14, 126, 392
AclWI	GGATC	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	1 cut(s)	421
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	2 cut(s)	5, 347
AgsI	TTSAA	2 cut(s)	247, 358
AhdI	GACNNNNNGTC	1 cut(s)	541
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AluBI	AGCT	2 cut(s)	435, 555
AluI	AGCT	2 cut(s)	435, 555
Alw21I	GWGCWC	1 cut(s)	557
AlwI	GGATC	1 cut(s)	66
AoxI	GGCC	3 cut(s)	167, 172, 190
ApeKI	GCWGC	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	442
AspLEI	GCGC	2 cut(s)	117, 150
AspS9I	GGNCC	4 cut(s)	167, 172, 289, 515
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	517
AvaII	GGWCC	2 cut(s)	289, 515
BanII	GRGCYC	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	557
BbvI	GCAGC	1 cut(s)	3
BccI	CCATC	2 cut(s)	279, 464
BceAI	ACGGC	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	171
BisI	GCNGC	3 cut(s)	14, 17, 392
BlsI	GCNGC	3 cut(s)	15, 18, 393
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	2 cut(s)	289, 515
BmeRI	GACNNNNNGTC	1 cut(s)	541
BmgT120I	GGNCC	4 cut(s)	167, 172, 289, 515
BmiI	GGNNCC	1 cut(s)	290
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	3 cut(s)	159, 378, 448
BpuMI	CCSGG	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	219
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	20, 518
Bse3DI	GCAATG	1 cut(s)	492
BseGI	GGATG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	2 cut(s)	20, 518
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	3
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	169, 174, 192
BsiHKAI	GWGCWC	1 cut(s)	557
BsiSI	CCGG	4 cut(s)	170, 235, 276, 371
BslFI	GGGAC	2 cut(s)	302, 529
BsmFI	GGGAC	2 cut(s)	302, 529
BsnI	GGCC	3 cut(s)	169, 174, 192
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	2 cut(s)	71, 531
BspACI	CCGC	3 cut(s)	14, 126, 392
BspANI	GGCC	3 cut(s)	169, 174, 192
BspCNI	CTCAG	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	581
BspLI	GGNNCC	1 cut(s)	290
BspPI	GGATC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	20, 518
BssAI	RCCGGY	1 cut(s)	275
BssMI	GATC	2 cut(s)	71, 531
BssNI	GRCGYC	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	543
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	3 cut(s)	11, 38, 130
BstDEI	CTNAG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	290
BstFNI	CGCG	1 cut(s)	117
BstHHI	GCGC	2 cut(s)	117, 150
BstKTI	GATC	2 cut(s)	74, 534
BstMBI	GATC	2 cut(s)	71, 531
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 101
BstSCI	CCNGG	1 cut(s)	169
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	3
BsuRI	GGCC	3 cut(s)	169, 174, 192
BtgZI	GCGATG	1 cut(s)	401
BtsCI	GGATG	1 cut(s)	290
BtsIMutI	CAGTG	1 cut(s)	27
Cac8I	GCNNGC	3 cut(s)	11, 38, 130
CciI	TCATGA	1 cut(s)	581
CfoI	GCGC	2 cut(s)	117, 150
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	4 cut(s)	167, 172, 289, 515
CseI	GACGC	3 cut(s)	106, 121, 227
Csp6I	GTAC	2 cut(s)	4, 346
CviAII	CATG	3 cut(s)	97, 380, 582
CviJI	RGCY	9 cut(s)	95, 104, 169, 174, 192, 370, 409, 435, 555
CviKI_1	RGCY	9 cut(s)	95, 104, 169, 174, 192, 370, 409, 435, 555
CviQI	GTAC	2 cut(s)	4, 346
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	2 cut(s)	73, 533
DpnII	GATC	2 cut(s)	71, 531
DrdI	GACNNNNNNGTC	1 cut(s)	518
DriI	GACNNNNNGTC	1 cut(s)	541
DseDI	GACNNNNNNGTC	1 cut(s)	518
Eam1105I	GACNNNNNGTC	1 cut(s)	541
EciI	GGCGGA	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	555
Eco24I	GRGCYC	1 cut(s)	557
Eco47I	GGWCC	2 cut(s)	289, 515
Eco53kI	GAGCTC	1 cut(s)	555
Eco57I	CTGAAG	1 cut(s)	421
EcoICRI	GAGCTC	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	557
FaeI	CATG	3 cut(s)	100, 383, 585
FaiI	YATR	8 cut(s)	98, 230, 232, 251, 315, 381, 417, 583
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	2 cut(s)	302, 529
FatI	CATG	3 cut(s)	96, 379, 581
FauNDI	CATATG	1 cut(s)	230
Fnu4HI	GCNGC	3 cut(s)	14, 17, 392
FokI	GGATG	1 cut(s)	297
FriOI	GRGCYC	1 cut(s)	557
Fsp4HI	GCNGC	3 cut(s)	14, 17, 392
GlaI	GCGC	2 cut(s)	116, 149
GluI	GCNGC	3 cut(s)	14, 17, 392
HaeIII	GGCC	3 cut(s)	169, 174, 192
HapII	CCGG	4 cut(s)	170, 235, 276, 371
HgaI	GACGC	3 cut(s)	106, 121, 227
HhaI	GCGC	2 cut(s)	117, 150
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	3 cut(s)	100, 383, 585
Hin6I	GCGC	2 cut(s)	115, 148
HinP1I	GCGC	2 cut(s)	115, 148
HinfI	GANTC	5 cut(s)	200, 206, 331, 351, 536
HpaII	CCGG	4 cut(s)	170, 235, 276, 371
HphI	GGTGA	1 cut(s)	517
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	4 cut(s)	160, 205, 399, 440
Hpy188III	TCNNGA	3 cut(s)	244, 355, 582
Hpy8I	GTNNAC	1 cut(s)	339
Hpy99I	CGWCG	5 cut(s)	110, 122, 137, 191, 221
HpyAV	CCTTC	5 cut(s)	137, 223, 232, 352, 487
HpyCH4III	ACNGT	1 cut(s)	543
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	4 cut(s)	36, 304, 461, 529
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 101
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	1 cut(s)	297
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	100, 383, 585
HspAI	GCGC	2 cut(s)	115, 148
Kzo9I	GATC	2 cut(s)	71, 531
LmnI	GCTCC	1 cut(s)	482
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	3 cut(s)	159, 378, 448
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	2 cut(s)	73, 533
MboI	GATC	2 cut(s)	71, 531
MboII	GAAGA	1 cut(s)	584
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	3 cut(s)	310, 442, 499
MlyI	GAGTC	3 cut(s)	194, 340, 530
MmeI	TCCRAC	2 cut(s)	99, 138
MseI	TTAA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	4 cut(s)	170, 235, 276, 371
MspR9I	CCNGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	2 cut(s)	22, 101
NciI	CCSGG	1 cut(s)	171
NdeI	CATATG	1 cut(s)	230
NdeII	GATC	2 cut(s)	71, 531
NlaIII	CATG	3 cut(s)	100, 383, 585
NlaIV	GGNNCC	1 cut(s)	290
NmuCI	GTSAC	1 cut(s)	520
PagI	TCATGA	1 cut(s)	581
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 195
PfeI	GAWTC	2 cut(s)	206, 351
PkrI	GCNGC	3 cut(s)	15, 18, 393
PleI	GAGTC	3 cut(s)	194, 339, 530
PpsI	GAGTC	3 cut(s)	194, 339, 530
Psp124BI	GAGCTC	1 cut(s)	557
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	4 cut(s)	167, 172, 289, 515
RsaI	GTAC	2 cut(s)	5, 347
RsaNI	GTAC	2 cut(s)	4, 346
SacI	GAGCTC	1 cut(s)	557
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	3 cut(s)	14, 17, 392
Sau3AI	GATC	2 cut(s)	71, 531
Sau96I	GGNCC	4 cut(s)	167, 172, 289, 515
SchI	GAGTC	3 cut(s)	194, 340, 530
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	557
SetI	ASST	9 cut(s)	141, 215, 243, 257, 300, 437, 457, 498, 557
SfaNI	GCATC	3 cut(s)	159, 378, 448
SinI	GGWCC	2 cut(s)	289, 515
Sse9I	AATT	3 cut(s)	310, 442, 499
SsiI	CCGC	3 cut(s)	14, 126, 392
SstI	GAGCTC	1 cut(s)	557
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	543
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	4 cut(s)	135, 216, 534, 557
TasI	AATT	3 cut(s)	310, 442, 499
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	2 cut(s)	16, 394
TfiI	GAWTC	2 cut(s)	206, 351
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	4 cut(s)	282, 330, 368, 506
TspGWI	ACGGA	2 cut(s)	363, 528
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	2 cut(s)	289, 515
XapI	RAATTY	1 cut(s)	442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.